Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:23:33 (2002053): wrapper (7.7.26015): starting
05:23:33 (2002053): wrapper: running run_atlas (--nthreads 3)
[2026-02-15 05:23:33] Arguments: --nthreads 3
[2026-02-15 05:23:33] Threads: 3
[2026-02-15 05:23:33] Checking for CVMFS
[2026-02-15 05:23:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-15 05:23:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-15 05:23:34] Running cvmfs_config stat atlas.cern.ch
[2026-02-15 05:23:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-15 05:23:34] 2.9.2.0 1958799 281 56136 156256 3 50 25794530 36864001 0 130560 0 120305 99.978 13423 22371 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-15 05:23:34] CVMFS is ok
[2026-02-15 05:23:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-15 05:23:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-15 05:23:34] Further information can be found at the LHC@home message board.
[2026-02-15 05:23:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-15 05:23:34] Checking for apptainer binary...
[2026-02-15 05:23:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-15 05:23:34] Running /usr/bin/apptainer --version
[2026-02-15 05:23:34] apptainer version 1.4.1-1.1
[2026-02-15 05:23:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-15 05:23:34] thA335a
[2026-02-15 05:23:34] apptainer works
[2026-02-15 05:23:34] Set ATHENA_PROC_NUMBER=3
[2026-02-15 05:23:34] Set ATHENA_CORE_NUMBER=3
[2026-02-15 05:23:34] Starting ATLAS job with PandaID=7010052292
[2026-02-15 05:23:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-15 06:52:11]  *** The last 200 lines of the pilot log: ***
[2026-02-15 06:52:11] 2026-02-15 05:51:40,600 | INFO     | job 7010052292 has completed (purged errors)
[2026-02-15 06:52:11] 2026-02-15 05:51:40,600 | INFO     | overall cleanup function is called
[2026-02-15 06:52:11] 2026-02-15 05:51:41,602 | INFO     | --- collectZombieJob: --- 10, [2010514]
[2026-02-15 06:52:11] 2026-02-15 05:51:41,602 | INFO     | zombie collector waiting for pid 2010514
[2026-02-15 06:52:11] 2026-02-15 05:51:41,602 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-15 06:52:11] 2026-02-15 05:51:41,602 | INFO     | collected zombie processes
[2026-02-15 06:52:11] 2026-02-15 05:51:41,602 | INFO     | will attempt to kill all subprocesses of pid=2010514
[2026-02-15 06:52:11] 2026-02-15 05:51:41,651 | INFO     | process IDs to be killed: [2010514] (in reverse order)
[2026-02-15 06:52:11] 2026-02-15 05:51:41,676 | WARNING  | found no corresponding commands to process id(s)
[2026-02-15 06:52:11] 2026-02-15 05:51:41,677 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-15 06:52:11] 2026-02-15 05:51:41,678 | INFO     | did not find any defunct processes belonging to 2010514
[2026-02-15 06:52:11] 2026-02-15 05:51:41,679 | INFO     | did not find any defunct processes belonging to 2010514
[2026-02-15 06:52:11] 2026-02-15 05:51:41,680 | INFO     | ready for new job
[2026-02-15 06:52:11] 2026-02-15 05:51:41,680 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-15 06:52:11] 2026-02-15 05:51:41,680 | INFO     | **************************************
[2026-02-15 06:52:11] 2026-02-15 05:51:41,680 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-15 06:52:11] 2026-02-15 05:51:41,680 | INFO     | **************************************
[2026-02-15 06:52:11] 2026-02-15 05:51:41,680 | INFO     | 
[2026-02-15 06:52:11] 2026-02-15 05:51:41,681 | INFO     | architecture information:
[2026-02-15 06:52:11] 2026-02-15 05:51:41,681 | INFO     | executing command: cat /etc/os-release
[2026-02-15 06:52:11] 2026-02-15 05:51:41,689 | INFO     | cat /etc/os-release:
[2026-02-15 06:52:11] NAME="CentOS Linux"
[2026-02-15 06:52:11] VERSION="7 (Core)"
[2026-02-15 06:52:11] ID="centos"
[2026-02-15 06:52:11] ID_LIKE="rhel fedora"
[2026-02-15 06:52:11] VERSION_ID="7"
[2026-02-15 06:52:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-15 06:52:11] ANSI_COLOR="0;31"
[2026-02-15 06:52:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-15 06:52:11] HOME_URL="https://www.centos.org/"
[2026-02-15 06:52:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-15 06:52:11] 
[2026-02-15 06:52:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-15 06:52:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-15 06:52:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-15 06:52:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-15 06:52:11] 
[2026-02-15 06:52:11] 2026-02-15 05:51:41,689 | INFO     | **************************************
[2026-02-15 06:52:11] 2026-02-15 05:51:42,190 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-15 06:52:11] 2026-02-15 05:51:42,202 | INFO     | sufficient remaining disk space (377715949568 B)
[2026-02-15 06:52:11] 2026-02-15 05:51:42,203 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-15 06:52:11] 2026-02-15 05:51:42,203 | INFO     | current server update state: UPDATING_FINAL
[2026-02-15 06:52:11] 2026-02-15 05:51:42,203 | INFO     | update_server=False
[2026-02-15 06:52:11] 2026-02-15 05:51:42,203 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-15 06:52:11] 2026-02-15 05:51:42,203 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-15 06:52:11] 2026-02-15 05:51:42,416 | WARNING  | process 2010514 can no longer be monitored (due to stat problems) - aborting
[2026-02-15 06:52:11] 2026-02-15 05:51:42,450 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-15 06:52:11] 2026-02-15 05:51:42,451 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-15 06:52:11] 2026-02-15 05:51:42,451 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-15 06:52:11] 2026-02-15 05:51:42,451 | WARNING  | maxPSS not found in memory monitor output
[2026-02-15 06:52:11] 2026-02-15 05:51:42,451 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7010052292/payload.stdout) since it has not been created yet
[2026-02-15 06:52:11] 2026-02-15 05:51:42,451 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-15 06:52:11] 2026-02-15 05:51:42,461 | INFO     | sufficient remaining disk space (377715949568 B)
[2026-02-15 06:52:11] 2026-02-15 05:51:42,461 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-15 06:52:11] 2026-02-15 05:51:42,461 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7010052292/HITS.48318018._011802.pool.root.1 since it does not exist
[2026-02-15 06:52:11] 2026-02-15 05:51:42,474 | INFO     | all data control threads have been joined
[2026-02-15 06:52:11] 2026-02-15 05:51:42,506 | INFO     | number of running child processes to parent process 2010514: 1
[2026-02-15 06:52:11] 2026-02-15 05:51:42,506 | INFO     | maximum number of monitored processes: 6
[2026-02-15 06:52:11] 2026-02-15 05:51:42,506 | INFO     | aborting job monitoring since job object (job id=7010052292) has expired
[2026-02-15 06:52:11] 2026-02-15 05:51:42,506 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-15 06:52:11] 2026-02-15 05:51:42,506 | INFO     | will abort loop
[2026-02-15 06:52:11] 2026-02-15 05:51:42,834 | INFO     | all payload control threads have been joined
[2026-02-15 06:52:11] 2026-02-15 05:51:43,209 | INFO     | [job] queue monitor thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:43,209 | INFO     | [job] retrieve thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:43,257 | INFO     | [payload] validate_pre thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:43,277 | INFO     | all job control threads have been joined
[2026-02-15 06:52:11] 2026-02-15 05:51:43,300 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:43,410 | INFO     | [data] copytool_in thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:43,466 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-15 06:52:11] 2026-02-15 05:51:43,476 | INFO     | [data] control thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:43,510 | INFO     | [job] job monitor thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:43,823 | INFO     | [payload] execute_payloads thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:43,839 | INFO     | [payload] control thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:44,255 | INFO     | [payload] validate_post thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:44,280 | INFO     | [job] control thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:44,426 | INFO     | [payload] failed_post thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:44,498 | INFO     | [job] validate thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:44,591 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-15 06:52:11] 2026-02-15 05:51:44,686 | INFO     | [job] create_data_payload thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:45,472 | INFO     | [data] copytool_out thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:48,598 | INFO     | [data] queue_monitor thread has finished
[2026-02-15 06:52:11] 2026-02-15 05:51:50,176 | INFO     | [monitor] cgroup control has ended
[2026-02-15 06:52:11] 2026-02-15 05:51:51,053 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140510806841152)>', '<ExcThread(monitor, started 140510316455680)>']
[2026-02-15 06:52:11] 2026-02-15 05:51:56,076 | INFO     | all workflow threads have been joined
[2026-02-15 06:52:11] 2026-02-15 05:51:56,076 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-15 06:52:11] 2026-02-15 05:51:56,077 | INFO     | traces error code: 0
[2026-02-15 06:52:11] 2026-02-15 05:51:56,077 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-15 06:52:11] 2026-02-15 05:52:11,755 | INFO     | PID=2006090 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-15 06:52:11] 2026-02-15 05:52:11,755 | INFO     | found 0 job(s) in 20 queues
[2026-02-15 06:52:11] 2026-02-15 05:52:11,755 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-15 06:52:11] 2026-02-15 05:52:11,755 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-15 06:52:11] 2026-02-15 05:52:11,755 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-15 06:52:11] 2026-02-15 05:52:11,756 | INFO     | [monitor] control thread has ended
[2026-02-15 06:52:11] 2026-02-15 05:52:11,802 [wrapper] ==== pilot stdout END ====
[2026-02-15 06:52:11] 2026-02-15 05:52:11,804 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-15 06:52:11] 2026-02-15 05:52:11,807 [wrapper] pilotpid: 2006090
[2026-02-15 06:52:11] 2026-02-15 05:52:11,809 [wrapper] Pilot exit status: 0
[2026-02-15 06:52:11] 2026-02-15 05:52:11,816 [wrapper] pandaids: 7010052292
[2026-02-15 06:52:11] 2026-02-15 05:52:11,833 [wrapper] cleanup supervisor_pilot 2015997 2006091
[2026-02-15 06:52:11] 2026-02-15 05:52:11,835 [wrapper] Test setup, not cleaning
[2026-02-15 06:52:11] 2026-02-15 05:52:11,837 [wrapper] apfmon messages muted
[2026-02-15 06:52:11] 2026-02-15 05:52:11,840 [wrapper] ==== wrapper stdout END ====
[2026-02-15 06:52:11] 2026-02-15 05:52:11,842 [wrapper] ==== wrapper stderr END ====
[2026-02-15 06:52:11]  *** Error codes and diagnostics ***
[2026-02-15 06:52:11]     "exeErrorCode": 0,
[2026-02-15 06:52:11]     "exeErrorDiag": "",
[2026-02-15 06:52:11]     "pilotErrorCode": 0,
[2026-02-15 06:52:11]     "pilotErrorDiag": "",
[2026-02-15 06:52:11]  *** Listing of results directory ***
[2026-02-15 06:52:11] total 668408
[2026-02-15 06:52:11] -rwx------ 1 boinc boinc     36322 Feb 15 00:02 runpilot2-wrapper.sh
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc    584627 Feb 15 00:03 pilot3.tar.gz
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc      5111 Feb 15 00:03 queuedata.json
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc       100 Feb 15 05:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-15 06:52:11] -rwxr-xr-x 1 boinc boinc      7986 Feb 15 05:23 run_atlas
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc       105 Feb 15 05:23 job.xml
[2026-02-15 06:52:11] -rw-r--r-- 2 boinc boinc 492315491 Feb 15 05:23 EVNT.48318016._000224.pool.root.1
[2026-02-15 06:52:11] -rw-r--r-- 2 boinc boinc    597940 Feb 15 05:23 input.tar.gz
[2026-02-15 06:52:11] -rw-r--r-- 2 boinc boinc     15845 Feb 15 05:23 start_atlas.sh
[2026-02-15 06:52:11] drwxrwx--x 2 boinc boinc      4096 Feb 15 05:23 shared
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc         0 Feb 15 05:23 boinc_setup_complete
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc      6446 Feb 15 05:23 init_data.xml
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc         0 Feb 15 05:23 boinc_lockfile
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc      2522 Feb 15 05:23 pandaJob.out
[2026-02-15 06:52:11] -rw------- 1 boinc boinc   1000934 Feb 15 05:23 agis_schedconf.cvmfs.json
[2026-02-15 06:52:11] -rw------- 1 boinc boinc   1513015 Feb 15 05:23 agis_ddmendpoints.agis.ALL.json
[2026-02-15 06:52:11] -rw------- 1 boinc boinc       423 Feb 15 05:23 workernode_map.json
[2026-02-15 06:52:11] drwx------ 5 boinc boinc      4096 Feb 15 05:23 pilot3
[2026-02-15 06:52:11] -rw------- 1 boinc boinc 186160814 Feb 15 06:51 HITS.48318018._011802.pool.root.1
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc       530 Feb 15 06:51 boinc_task_state.xml
[2026-02-15 06:52:11] -rw------- 1 boinc boinc      1027 Feb 15 06:51 memory_monitor_summary.json
[2026-02-15 06:52:11] -rw------- 1 boinc boinc    255517 Feb 15 06:51 log.48318018._011802.job.log.tgz.1
[2026-02-15 06:52:11] -rw------- 1 boinc boinc      6319 Feb 15 06:51 heartbeat.json
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc      8192 Feb 15 06:51 boinc_mmap_file
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc        27 Feb 15 06:51 wrapper_checkpoint.txt
[2026-02-15 06:52:11] -rw------- 1 boinc boinc       747 Feb 15 06:52 pilotlog.txt
[2026-02-15 06:52:11] -rw------- 1 boinc boinc        95 Feb 15 06:52 pilot_heartbeat.json
[2026-02-15 06:52:11] -rw------- 1 boinc boinc    769381 Feb 15 06:52 log.48318018._011802.job.log.1
[2026-02-15 06:52:11] -rw------- 1 boinc boinc       357 Feb 15 06:52 output.list
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc       620 Feb 15 06:52 runtime_log
[2026-02-15 06:52:11] -rw------- 1 boinc boinc   1044480 Feb 15 06:52 result.tar.gz
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc      8901 Feb 15 06:52 runtime_log.err
[2026-02-15 06:52:11] -rw------- 1 boinc boinc       659 Feb 15 06:52 rUmLDmopdB9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmh7nKDm1pfu3m.diag
[2026-02-15 06:52:11] -rw-r--r-- 1 boinc boinc     12594 Feb 15 06:52 stderr.txt
[2026-02-15 06:52:11] HITS file was successfully produced:
[2026-02-15 06:52:11] -rw------- 1 boinc boinc 186160814 Feb 15 06:51 shared/HITS.pool.root.1
[2026-02-15 06:52:11]  *** Contents of shared directory: ***
[2026-02-15 06:52:11] total 664208
[2026-02-15 06:52:11] -rw-r--r-- 2 boinc boinc 492315491 Feb 15 05:23 ATLAS.root_0
[2026-02-15 06:52:11] -rw-r--r-- 2 boinc boinc    597940 Feb 15 05:23 input.tar.gz
[2026-02-15 06:52:11] -rw-r--r-- 2 boinc boinc     15845 Feb 15 05:23 start_atlas.sh
[2026-02-15 06:52:11] -rw------- 1 boinc boinc 186160814 Feb 15 06:51 HITS.pool.root.1
[2026-02-15 06:52:11] -rw------- 1 boinc boinc   1044480 Feb 15 06:52 result.tar.gz
06:52:13 (2002053): run_atlas exited; CPU time 15117.208003
06:52:13 (2002053): called boinc_finish(0)

</stderr_txt>
]]>

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