Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
12:18:43 (601057): wrapper (7.7.26015): starting
12:18:43 (601057): wrapper: running run_atlas (--nthreads 4)
[2026-02-16 12:18:43] Arguments: --nthreads 4
[2026-02-16 12:18:43] Threads: 4
[2026-02-16 12:18:43] Checking for CVMFS
[2026-02-16 12:18:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-16 12:18:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-16 12:18:43] Running cvmfs_config stat atlas.cern.ch
[2026-02-16 12:18:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-16 12:18:43] 2.13.3.0 11582 694 49036 156280 3 49 26587733 33554433 0 130560 0 391000 99.992 17272 198 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-02-16 12:18:43] CVMFS is ok
[2026-02-16 12:18:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-16 12:18:43] Checking for apptainer binary...
[2026-02-16 12:18:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-16 12:18:43] Running /usr/bin/apptainer --version
[2026-02-16 12:18:43] apptainer version 1.4.5
[2026-02-16 12:18:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-16 12:18:43] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-02-16 12:18:43] apptainer works
[2026-02-16 12:18:43] Set ATHENA_PROC_NUMBER=4
[2026-02-16 12:18:43] Set ATHENA_CORE_NUMBER=4
[2026-02-16 12:18:43] Starting ATLAS job with PandaID=7009999251
[2026-02-16 12:18:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-16 13:42:04]  *** The last 200 lines of the pilot log: ***
[2026-02-16 13:42:04]  domain=
[2026-02-16 13:42:04]  filesize=276459
[2026-02-16 13:42:04]  filetype=log
[2026-02-16 13:42:04]  guid=59d6f580-d1f6-4aad-af3c-5e5cd9a3a277
[2026-02-16 13:42:04]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-16 13:42:04]  is_altstaged=None
[2026-02-16 13:42:04]  is_tar=False
[2026-02-16 13:42:04]  lfn=log.48610874._000243.job.log.tgz.1
[2026-02-16 13:42:04]  mtime=0
[2026-02-16 13:42:04]  protocol_id=None
[2026-02-16 13:42:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-16 13:42:04]  replicas=None
[2026-02-16 13:42:04]  scope=mc23_13p6TeV
[2026-02-16 13:42:04]  status=None
[2026-02-16 13:42:04]  status_code=0
[2026-02-16 13:42:04]  storage_token=
[2026-02-16 13:42:04]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-7009999251/log.48610874._000243.job.log.tgz.1
[2026-02-16 13:42:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/1a/log.48610874._000243.job.log.tgz.1
[2026-02-16 13:42:04]  workdir=None
[2026-02-16 13:42:04] ]
[2026-02-16 13:42:04] 2026-02-16 11:41:21,232 | INFO     | transferring file log.48610874._000243.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-7009999251/log.48610874._000243.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-02-16 13:42:04] 2026-02-16 11:41:21,232 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-7009999251/log.48610874._000243.job.log.tgz.1 /home/ek/BOINC/slots/0/log.48610874._000243.job
[2026-02-16 13:42:04] 2026-02-16 11:41:21,240 | INFO     | adding to output.list: log.48610874._000243.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/28/1a/log.48610874._000243.job.log.tg
[2026-02-16 13:42:04] 2026-02-16 11:41:21,241 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-16 13:42:04] 2026-02-16 11:41:21,241 | INFO     | summary of transferred files:
[2026-02-16 13:42:04] 2026-02-16 11:41:21,241 | INFO     |  -- lfn=log.48610874._000243.job.log.tgz.1, status_code=0, status=transferred
[2026-02-16 13:42:04] 2026-02-16 11:41:21,241 | INFO     | stage-out finished correctly
[2026-02-16 13:42:04] 2026-02-16 11:41:22,176 | INFO     | monitor loop #380: job 0:7009999251 is in state 'finished'
[2026-02-16 13:42:04] 2026-02-16 11:41:22,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-16 13:42:04] 2026-02-16 11:41:23,148 | INFO     | time since job start (4951s) is within the limit (349056.0s)
[2026-02-16 13:42:04] 2026-02-16 11:41:23,196 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-16 13:42:04] 2026-02-16 11:41:24,561 | INFO     | job 7009999251 has state=finished
[2026-02-16 13:42:04] 2026-02-16 11:41:24,561 | INFO     | preparing for final server update for job 7009999251 in state='finished'
[2026-02-16 13:42:04] 2026-02-16 11:41:24,562 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-7009999251/jobReport.json
[2026-02-16 13:42:04] 2026-02-16 11:41:24,563 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-02-16 13:42:04] 2026-02-16 11:41:24,563 | INFO     | this job has now completed (state=finished)
[2026-02-16 13:42:04] 2026-02-16 11:41:24,563 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-16 13:42:04] 2026-02-16 11:41:24,563 | INFO     | log transfer has been attempted: DONE
[2026-02-16 13:42:04] 2026-02-16 11:41:24,563 | INFO     | job 7009999251 has finished - writing final server update
[2026-02-16 13:42:04] 2026-02-16 11:41:24,563 | INFO     | total number of processed events: 400 (read)
[2026-02-16 13:42:04] 2026-02-16 11:41:24,565 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7009999251/memory_monitor_summary.json (trf name=prmon)
[2026-02-16 13:42:04] 2026-02-16 11:41:24,565 | INFO     | extracted standard info from prmon json
[2026-02-16 13:42:04] 2026-02-16 11:41:24,565 | INFO     | extracted standard memory fields from prmon json
[2026-02-16 13:42:04] 2026-02-16 11:41:24,565 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-16 13:42:04] 2026-02-16 11:41:24,565 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-16 13:42:04] 2026-02-16 11:41:24,565 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | fitting pss+swap vs Time
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | sum of square deviations: 125630262.5
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | sum of deviations: -16295205140.500002
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | mean x: 1771239680.5
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | mean y: 2633196.0405405406
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | intersect: 229745955962.2505
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | chi2: 0.12374961843920694
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | current memory leak: -129.71 B/s (using 74 data points, chi2=0.12)
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | could have reported an average CPU frequency of 3013 MHz (6 samples)
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | ..............................
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | . Timing measurements:
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | . get job = 0 s
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | . initial setup = 3 s
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | . payload setup = 3 s
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | . stage-in = 0 s
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | . payload execution = 4929 s
[2026-02-16 13:42:04] 2026-02-16 11:41:24,566 | INFO     | . stage-out = 0 s
[2026-02-16 13:42:04] 2026-02-16 11:41:24,567 | INFO     | . log creation = 0 s
[2026-02-16 13:42:04] 2026-02-16 11:41:24,567 | INFO     | ..............................
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | 
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | job summary report
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | --------------------------------------------------
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | PanDA job id: 7009999251
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | task id: 48610874
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | errors: (none)
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | pilot state: finished 
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | transexitcode: 0
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | exeerrorcode: 0
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | exeerrordiag: 
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | exitcode: 0
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | exitmsg: OK
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | cpuconsumptiontime: 18940 s
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | nevents: 400
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | neventsw: 0
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | pid: 609772
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | pgrp: 609772
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | corecount: 4
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | event service: False
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | sizes: {0: 2282255, 11: 2282255, 4936: 2308692, 4937: 2317690, 4939: 2317746, 4940: 2317940}
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | --------------------------------------------------
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | 
[2026-02-16 13:42:04] 2026-02-16 11:41:24,595 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-02-16 13:42:04] 2026-02-16 11:41:24,604 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,604 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,604 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,604 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,604 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,604 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | job 7009999251 has completed (purged errors)
[2026-02-16 13:42:04] 2026-02-16 11:41:24,605 | INFO     | overall cleanup function is called
[2026-02-16 13:42:04] 2026-02-16 11:41:25,612 | INFO     | --- collectZombieJob: --- 10, [609772]
[2026-02-16 13:42:04] 2026-02-16 11:41:25,612 | INFO     | zombie collector waiting for pid 609772
[2026-02-16 13:42:04] 2026-02-16 11:41:25,612 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-16 13:42:04] 2026-02-16 11:41:25,612 | INFO     | collected zombie processes
[2026-02-16 13:42:04] 2026-02-16 11:41:25,612 | INFO     | will attempt to kill all subprocesses of pid=609772
[2026-02-16 13:42:04] 2026-02-16 11:41:25,694 | INFO     | process IDs to be killed: [609772] (in reverse order)
[2026-02-16 13:42:04] 2026-02-16 11:41:25,724 | WARNING  | found no corresponding commands to process id(s)
[2026-02-16 13:42:04] 2026-02-16 11:41:25,725 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-16 13:42:04] 2026-02-16 11:41:25,727 | INFO     | did not find any defunct processes belonging to 609772
[2026-02-16 13:42:04] 2026-02-16 11:41:25,729 | INFO     | did not find any defunct processes belonging to 609772
[2026-02-16 13:42:04] 2026-02-16 11:41:25,729 | INFO     | ready for new job
[2026-02-16 13:42:04] 2026-02-16 11:41:25,729 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-16 13:42:04] 2026-02-16 11:41:25,730 | INFO     | **************************************
[2026-02-16 13:42:04] 2026-02-16 11:41:25,730 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-16 13:42:04] 2026-02-16 11:41:25,730 | INFO     | **************************************
[2026-02-16 13:42:04] 2026-02-16 11:41:25,730 | INFO     | 
[2026-02-16 13:42:04] 2026-02-16 11:41:25,731 | INFO     | architecture information:
[2026-02-16 13:42:04] 2026-02-16 11:41:25,731 | INFO     | executing command: cat /etc/os-release
[2026-02-16 13:42:04] 2026-02-16 11:41:25,737 | INFO     | cat /etc/os-release:
[2026-02-16 13:42:04] NAME="CentOS Linux"
[2026-02-16 13:42:04] VERSION="7 (Core)"
[2026-02-16 13:42:04] ID="centos"
[2026-02-16 13:42:04] ID_LIKE="rhel fedora"
[2026-02-16 13:42:04] VERSION_ID="7"
[2026-02-16 13:42:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-16 13:42:04] ANSI_COLOR="0;31"
[2026-02-16 13:42:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-16 13:42:04] HOME_URL="https://www.centos.org/"
[2026-02-16 13:42:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-16 13:42:04] 
[2026-02-16 13:42:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-16 13:42:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-16 13:42:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-16 13:42:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-16 13:42:04] 
[2026-02-16 13:42:04] 2026-02-16 11:41:25,737 | INFO     | **************************************
[2026-02-16 13:42:04] 2026-02-16 11:41:26,239 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-02-16 13:42:04] 2026-02-16 11:41:26,245 | INFO     | sufficient remaining disk space (62080942080 B)
[2026-02-16 13:42:04] 2026-02-16 11:41:26,245 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-16 13:42:04] 2026-02-16 11:41:26,245 | INFO     | current server update state: UPDATING_FINAL
[2026-02-16 13:42:04] 2026-02-16 11:41:26,245 | INFO     | update_server=False
[2026-02-16 13:42:04] 2026-02-16 11:41:26,245 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-16 13:42:04] 2026-02-16 11:41:26,245 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-16 13:42:04] 2026-02-16 11:41:26,246 | INFO     | aborting loop
[2026-02-16 13:42:04] 2026-02-16 11:41:26,246 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-16 13:42:04] 2026-02-16 11:41:26,560 | INFO     | all job control threads have been joined
[2026-02-16 13:42:04] 2026-02-16 11:41:26,751 | INFO     | all data control threads have been joined
[2026-02-16 13:42:04] 2026-02-16 11:41:26,775 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-16 13:42:04] 2026-02-16 11:41:26,835 | INFO     | all payload control threads have been joined
[2026-02-16 13:42:04] 2026-02-16 11:41:27,250 | INFO     | [job] job monitor thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:27,251 | INFO     | [job] retrieve thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:27,251 | INFO     | [job] queue monitor thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:27,545 | INFO     | [payload] failed_post thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:27,565 | INFO     | [job] control thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:27,757 | INFO     | [data] control thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:27,840 | INFO     | [payload] control thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:28,317 | INFO     | [payload] execute_payloads thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:28,462 | INFO     | [payload] validate_pre thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:28,509 | INFO     | [job] validate thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:28,512 | INFO     | [job] create_data_payload thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:28,722 | INFO     | [data] copytool_in thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:28,780 | INFO     | [data] copytool_out thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:28,843 | INFO     | [payload] validate_post thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:29,228 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-16 13:42:04] 2026-02-16 11:41:33,233 | INFO     | [data] queue_monitor thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:36,900 | INFO     | job.realtimelogging is not enabled
[2026-02-16 13:42:04] 2026-02-16 11:41:37,905 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-16 13:42:04] 2026-02-16 11:41:56,303 | INFO     | PID=605122 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-16 13:42:04] 2026-02-16 11:41:56,303 | INFO     | found 0 job(s) in 20 queues
[2026-02-16 13:42:04] 2026-02-16 11:41:56,303 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-16 13:42:04] 2026-02-16 11:41:56,303 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-16 13:42:04] 2026-02-16 11:41:58,230 | INFO     | [monitor] cgroup control has ended
[2026-02-16 13:42:04] 2026-02-16 11:41:59,782 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140055237384000)>', '<ExcThread(monitor, started 140054882133760)>']
[2026-02-16 13:42:04] 2026-02-16 11:42:00,323 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-16 13:42:04] 2026-02-16 11:42:00,323 | INFO     | [monitor] control thread has ended
[2026-02-16 13:42:04] 2026-02-16 11:42:04,789 | INFO     | all workflow threads have been joined
[2026-02-16 13:42:04] 2026-02-16 11:42:04,789 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-16 13:42:04] 2026-02-16 11:42:04,789 | INFO     | traces error code: 0
[2026-02-16 13:42:04] 2026-02-16 11:42:04,790 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-16 13:42:04] 2026-02-16 11:42:04,835 [wrapper] ==== pilot stdout END ====
[2026-02-16 13:42:04] 2026-02-16 11:42:04,836 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-16 13:42:04] 2026-02-16 11:42:04,838 [wrapper] pilotpid: 605122
[2026-02-16 13:42:04] 2026-02-16 11:42:04,839 [wrapper] Pilot exit status: 0
[2026-02-16 13:42:04] 2026-02-16 11:42:04,845 [wrapper] pandaids: 7009999251
[2026-02-16 13:42:04] 2026-02-16 11:42:04,864 [wrapper] cleanup supervisor_pilot  664066 605123
[2026-02-16 13:42:04] 2026-02-16 11:42:04,865 [wrapper] Test setup, not cleaning
[2026-02-16 13:42:04] 2026-02-16 11:42:04,867 [wrapper] apfmon messages muted
[2026-02-16 13:42:04] 2026-02-16 11:42:04,868 [wrapper] ==== wrapper stdout END ====
[2026-02-16 13:42:04] 2026-02-16 11:42:04,870 [wrapper] ==== wrapper stderr END ====
[2026-02-16 13:42:04]  *** Error codes and diagnostics ***
[2026-02-16 13:42:04]     "exeErrorCode": 0,
[2026-02-16 13:42:04]     "exeErrorDiag": "",
[2026-02-16 13:42:04]     "pilotErrorCode": 0,
[2026-02-16 13:42:04]     "pilotErrorDiag": "",
[2026-02-16 13:42:04]  *** Listing of results directory ***
[2026-02-16 13:42:04] total 471668
[2026-02-16 13:42:04] -rw-r--r-- 1 ek ek    584627 Feb 15 00:22 pilot3.tar.gz
[2026-02-16 13:42:04] -rwx------ 1 ek ek     36322 Feb 15 00:24 runpilot2-wrapper.sh
[2026-02-16 13:42:04] -rw-r--r-- 1 ek ek      5111 Feb 15 00:26 queuedata.json
[2026-02-16 13:42:04] -rw-rw-r-- 1 ek ek       100 Feb 16 12:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-16 13:42:04] -rwxr-xr-x 1 ek ek      7986 Feb 16 12:18 run_atlas
[2026-02-16 13:42:04] -rw-rw-r-- 1 ek ek       105 Feb 16 12:18 job.xml
[2026-02-16 13:42:04] -rw-r--r-- 2 ek ek 282842458 Feb 16 12:18 EVNT.48610872._000012.pool.root.1
[2026-02-16 13:42:04] -rw-r--r-- 2 ek ek    597946 Feb 16 12:18 input.tar.gz
[2026-02-16 13:42:04] -rw-r--r-- 2 ek ek     15845 Feb 16 12:18 start_atlas.sh
[2026-02-16 13:42:04] drwxrwx--x 2 ek ek      4096 Feb 16 12:18 shared
[2026-02-16 13:42:04] -rw-rw-r-- 1 ek ek         0 Feb 16 12:18 boinc_setup_complete
[2026-02-16 13:42:04] -rw-rw-r-- 1 ek ek      9840 Feb 16 12:18 init_data.xml
[2026-02-16 13:42:04] -rw-rw-r-- 1 ek ek         0 Feb 16 12:18 boinc_lockfile
[2026-02-16 13:42:04] -rw-rw-r-- 1 ek ek      2551 Feb 16 12:18 pandaJob.out
[2026-02-16 13:42:04] -rw------- 1 ek ek        50 Feb 16 12:18 setup.sh.local
[2026-02-16 13:42:04] -rw------- 1 ek ek   1000948 Feb 16 12:18 agis_schedconf.cvmfs.json
[2026-02-16 13:42:04] -rw------- 1 ek ek   1513015 Feb 16 12:18 agis_ddmendpoints.agis.ALL.json
[2026-02-16 13:42:04] -rw------- 1 ek ek       433 Feb 16 12:18 workernode_map.json
[2026-02-16 13:42:04] drwx------ 5 ek ek      4096 Feb 16 12:18 pilot3
[2026-02-16 13:42:04] -rw------- 1 ek ek 194204331 Feb 16 13:41 HITS.48610874._000243.pool.root.1
[2026-02-16 13:42:04] -rw------- 1 ek ek      1035 Feb 16 13:41 memory_monitor_summary.json
[2026-02-16 13:42:04] -rw-rw-r-- 1 ek ek       529 Feb 16 13:41 boinc_task_state.xml
[2026-02-16 13:42:04] -rw------- 1 ek ek    276459 Feb 16 13:41 log.48610874._000243.job.log.tgz.1
[2026-02-16 13:42:04] -rw------- 1 ek ek        95 Feb 16 13:41 pilot_heartbeat.json
[2026-02-16 13:42:04] -rw------- 1 ek ek      6337 Feb 16 13:41 heartbeat.json
[2026-02-16 13:42:04] -rw-rw-r-- 1 ek ek        27 Feb 16 13:41 wrapper_checkpoint.txt
[2026-02-16 13:42:04] -rw-rw-r-- 1 ek ek      8192 Feb 16 13:41 boinc_mmap_file
[2026-02-16 13:42:04] -rw------- 1 ek ek      4815 Feb 16 13:42 pilotlog.txt
[2026-02-16 13:42:04] -rw------- 1 ek ek    723189 Feb 16 13:42 log.48610874._000243.job.log.1
[2026-02-16 13:42:04] -rw------- 1 ek ek       357 Feb 16 13:42 output.list
[2026-02-16 13:42:04] -rw-rw-r-- 1 ek ek       620 Feb 16 13:42 runtime_log
[2026-02-16 13:42:04] -rw------- 1 ek ek   1013760 Feb 16 13:42 result.tar.gz
[2026-02-16 13:42:04] -rw------- 1 ek ek       666 Feb 16 13:42 UXNNDmpEdB9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmjznKDmFWyHvm.diag
[2026-02-16 13:42:04] -rw-rw-r-- 1 ek ek      9501 Feb 16 13:42 runtime_log.err
[2026-02-16 13:42:04] -rw-rw-r-- 1 ek ek     20938 Feb 16 13:42 stderr.txt
[2026-02-16 13:42:04] HITS file was successfully produced:
[2026-02-16 13:42:04] -rw------- 1 ek ek 194204331 Feb 16 13:41 shared/HITS.pool.root.1
[2026-02-16 13:42:04]  *** Contents of shared directory: ***
[2026-02-16 13:42:04] total 467472
[2026-02-16 13:42:04] -rw-r--r-- 2 ek ek 282842458 Feb 16 12:18 ATLAS.root_0
[2026-02-16 13:42:04] -rw-r--r-- 2 ek ek    597946 Feb 16 12:18 input.tar.gz
[2026-02-16 13:42:04] -rw-r--r-- 2 ek ek     15845 Feb 16 12:18 start_atlas.sh
[2026-02-16 13:42:04] -rw------- 1 ek ek 194204331 Feb 16 13:41 HITS.pool.root.1
[2026-02-16 13:42:04] -rw------- 1 ek ek   1013760 Feb 16 13:42 result.tar.gz
13:42:05 (601057): run_atlas exited; CPU time 18981.575215
13:42:05 (601057): called boinc_finish(0)

</stderr_txt>
]]>

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