Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:02:40 (1987834): wrapper (7.7.26015): starting
04:02:40 (1987834): wrapper: running run_atlas (--nthreads 3)
[2026-02-15 04:02:40] Arguments: --nthreads 3
[2026-02-15 04:02:40] Threads: 3
[2026-02-15 04:02:40] Checking for CVMFS
[2026-02-15 04:02:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-15 04:02:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-15 04:02:40] Running cvmfs_config stat atlas.cern.ch
[2026-02-15 04:02:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-15 04:02:40] 2.9.2.0 1958799 200 52124 156252 3 50 25775395 36864001 0 130560 0 80402 99.976 6959 14869 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-15 04:02:40] CVMFS is ok
[2026-02-15 04:02:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-15 04:02:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-15 04:02:40] Further information can be found at the LHC@home message board.
[2026-02-15 04:02:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-15 04:02:40] Checking for apptainer binary...
[2026-02-15 04:02:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-15 04:02:40] Running /usr/bin/apptainer --version
[2026-02-15 04:02:40] apptainer version 1.4.1-1.1
[2026-02-15 04:02:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-15 04:02:40] thA335a
[2026-02-15 04:02:40] apptainer works
[2026-02-15 04:02:40] Set ATHENA_PROC_NUMBER=3
[2026-02-15 04:02:40] Set ATHENA_CORE_NUMBER=3
[2026-02-15 04:02:40] Starting ATLAS job with PandaID=7009870418
[2026-02-15 04:02:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-15 05:23:11]  *** The last 200 lines of the pilot log: ***
[2026-02-15 05:23:11] 2026-02-15 04:22:39,025 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-15 05:23:11] 2026-02-15 04:22:39,025 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-15 05:23:11] 2026-02-15 04:22:39,025 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-15 05:23:11] 2026-02-15 04:22:39,025 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-15 05:23:11] 2026-02-15 04:22:39,025 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-15 05:23:11] 2026-02-15 04:22:39,025 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-15 05:23:11] 2026-02-15 04:22:39,025 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-15 05:23:11] 2026-02-15 04:22:39,025 | INFO     | job 7009870418 has completed (purged errors)
[2026-02-15 05:23:11] 2026-02-15 04:22:39,025 | INFO     | overall cleanup function is called
[2026-02-15 05:23:11] 2026-02-15 04:22:40,032 | INFO     | --- collectZombieJob: --- 10, [1996294]
[2026-02-15 05:23:11] 2026-02-15 04:22:40,032 | INFO     | zombie collector waiting for pid 1996294
[2026-02-15 05:23:11] 2026-02-15 04:22:40,032 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-15 05:23:11] 2026-02-15 04:22:40,032 | INFO     | collected zombie processes
[2026-02-15 05:23:11] 2026-02-15 04:22:40,032 | INFO     | will attempt to kill all subprocesses of pid=1996294
[2026-02-15 05:23:11] 2026-02-15 04:22:40,081 | INFO     | process IDs to be killed: [1996294] (in reverse order)
[2026-02-15 05:23:11] 2026-02-15 04:22:40,107 | WARNING  | found no corresponding commands to process id(s)
[2026-02-15 05:23:11] 2026-02-15 04:22:40,108 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-15 05:23:11] 2026-02-15 04:22:40,109 | INFO     | did not find any defunct processes belonging to 1996294
[2026-02-15 05:23:11] 2026-02-15 04:22:40,110 | INFO     | did not find any defunct processes belonging to 1996294
[2026-02-15 05:23:11] 2026-02-15 04:22:40,110 | INFO     | ready for new job
[2026-02-15 05:23:11] 2026-02-15 04:22:40,110 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-15 05:23:11] 2026-02-15 04:22:40,111 | INFO     | **************************************
[2026-02-15 05:23:11] 2026-02-15 04:22:40,111 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-15 05:23:11] 2026-02-15 04:22:40,111 | INFO     | **************************************
[2026-02-15 05:23:11] 2026-02-15 04:22:40,111 | INFO     | 
[2026-02-15 05:23:11] 2026-02-15 04:22:40,111 | INFO     | architecture information:
[2026-02-15 05:23:11] 2026-02-15 04:22:40,112 | INFO     | executing command: cat /etc/os-release
[2026-02-15 05:23:11] 2026-02-15 04:22:40,120 | INFO     | cat /etc/os-release:
[2026-02-15 05:23:11] NAME="CentOS Linux"
[2026-02-15 05:23:11] VERSION="7 (Core)"
[2026-02-15 05:23:11] ID="centos"
[2026-02-15 05:23:11] ID_LIKE="rhel fedora"
[2026-02-15 05:23:11] VERSION_ID="7"
[2026-02-15 05:23:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-15 05:23:11] ANSI_COLOR="0;31"
[2026-02-15 05:23:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-15 05:23:11] HOME_URL="https://www.centos.org/"
[2026-02-15 05:23:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-15 05:23:11] 
[2026-02-15 05:23:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-15 05:23:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-15 05:23:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-15 05:23:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-15 05:23:11] 
[2026-02-15 05:23:11] 2026-02-15 04:22:40,120 | INFO     | **************************************
[2026-02-15 05:23:11] 2026-02-15 04:22:40,624 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-15 05:23:11] 2026-02-15 04:22:40,636 | INFO     | sufficient remaining disk space (378139574272 B)
[2026-02-15 05:23:11] 2026-02-15 04:22:40,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-15 05:23:11] 2026-02-15 04:22:40,636 | INFO     | current server update state: UPDATING_FINAL
[2026-02-15 05:23:11] 2026-02-15 04:22:40,636 | INFO     | update_server=False
[2026-02-15 05:23:11] 2026-02-15 04:22:40,636 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-15 05:23:11] 2026-02-15 04:22:40,636 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-15 05:23:11] 2026-02-15 04:22:40,636 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-15 05:23:11] 2026-02-15 04:22:40,791 | INFO     | all data control threads have been joined
[2026-02-15 05:23:11] 2026-02-15 04:22:41,596 | INFO     | all job control threads have been joined
[2026-02-15 05:23:11] 2026-02-15 04:22:41,639 | INFO     | [job] retrieve thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:41,642 | INFO     | [job] queue monitor thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:41,662 | INFO     | all payload control threads have been joined
[2026-02-15 05:23:11] 2026-02-15 04:22:41,797 | INFO     | [data] control thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:41,899 | INFO     | [payload] execute_payloads thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:41,956 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-15 05:23:11] 2026-02-15 04:22:42,005 | INFO     | [payload] failed_post thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:42,586 | INFO     | [payload] validate_post thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:42,600 | INFO     | [job] control thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:42,617 | WARNING  | process 1996294 can no longer be monitored (due to stat problems) - aborting
[2026-02-15 05:23:11] 2026-02-15 04:22:42,637 | INFO     | job.realtimelogging is not enabled
[2026-02-15 05:23:11] 2026-02-15 04:22:42,651 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-15 05:23:11] 2026-02-15 04:22:42,667 | INFO     | [payload] control thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:42,683 | INFO     | [job] create_data_payload thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:42,694 | INFO     | number of running child processes to parent process 1996294: 1
[2026-02-15 05:23:11] 2026-02-15 04:22:42,694 | INFO     | maximum number of monitored processes: 6
[2026-02-15 05:23:11] 2026-02-15 04:22:42,694 | INFO     | aborting job monitoring since job object (job id=7009870418) has expired
[2026-02-15 05:23:11] 2026-02-15 04:22:42,694 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-15 05:23:11] 2026-02-15 04:22:42,695 | INFO     | will abort loop
[2026-02-15 05:23:11] 2026-02-15 04:22:42,728 | INFO     | [payload] validate_pre thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:42,753 | INFO     | [job] validate thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:42,921 | INFO     | [data] copytool_in thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:43,643 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:43,700 | INFO     | [job] job monitor thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:43,962 | INFO     | [data] copytool_out thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:44,643 | INFO     | [data] queue_monitor thread has finished
[2026-02-15 05:23:11] 2026-02-15 04:22:55,168 | INFO     | [monitor] cgroup control has ended
[2026-02-15 05:23:11] 2026-02-15 04:22:57,000 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139978633701184)>', '<ExcThread(monitor, started 139978017339136)>']
[2026-02-15 05:23:11] 2026-02-15 04:23:02,026 | INFO     | all workflow threads have been joined
[2026-02-15 05:23:11] 2026-02-15 04:23:02,026 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-15 05:23:11] 2026-02-15 04:23:02,026 | INFO     | traces error code: 0
[2026-02-15 05:23:11] 2026-02-15 04:23:02,026 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-15 05:23:11] 2026-02-15 04:23:11,644 | INFO     | PID=1991874 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-15 05:23:11] 2026-02-15 04:23:11,644 | INFO     | found 0 job(s) in 20 queues
[2026-02-15 05:23:11] 2026-02-15 04:23:11,644 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-15 05:23:11] 2026-02-15 04:23:11,644 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-15 05:23:11] 2026-02-15 04:23:11,644 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-15 05:23:11] 2026-02-15 04:23:11,644 | INFO     | [monitor] control thread has ended
[2026-02-15 05:23:11] 2026-02-15 04:23:11,692 [wrapper] ==== pilot stdout END ====
[2026-02-15 05:23:11] 2026-02-15 04:23:11,694 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-15 05:23:11] 2026-02-15 04:23:11,696 [wrapper] pilotpid: 1991874
[2026-02-15 05:23:11] 2026-02-15 04:23:11,699 [wrapper] Pilot exit status: 0
[2026-02-15 05:23:11] 2026-02-15 04:23:11,706 [wrapper] pandaids: 7009870418
[2026-02-15 05:23:11] 2026-02-15 04:23:11,722 [wrapper] cleanup supervisor_pilot 2001760 1991875
[2026-02-15 05:23:11] 2026-02-15 04:23:11,725 [wrapper] Test setup, not cleaning
[2026-02-15 05:23:11] 2026-02-15 04:23:11,727 [wrapper] apfmon messages muted
[2026-02-15 05:23:11] 2026-02-15 04:23:11,729 [wrapper] ==== wrapper stdout END ====
[2026-02-15 05:23:11] 2026-02-15 04:23:11,732 [wrapper] ==== wrapper stderr END ====
[2026-02-15 05:23:11]  *** Error codes and diagnostics ***
[2026-02-15 05:23:11]     "exeErrorCode": 0,
[2026-02-15 05:23:11]     "exeErrorDiag": "",
[2026-02-15 05:23:11]     "pilotErrorCode": 0,
[2026-02-15 05:23:11]     "pilotErrorDiag": "",
[2026-02-15 05:23:11]  *** Listing of results directory ***
[2026-02-15 05:23:11] total 719360
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc    584627 Feb 14 23:22 pilot3.tar.gz
[2026-02-15 05:23:11] -rwx------ 1 boinc boinc     36322 Feb 14 23:22 runpilot2-wrapper.sh
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc      5111 Feb 14 23:23 queuedata.json
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc       100 Feb 15 04:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-15 05:23:11] -rwxr-xr-x 1 boinc boinc      7986 Feb 15 04:02 run_atlas
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc       105 Feb 15 04:02 job.xml
[2026-02-15 05:23:11] -rw-r--r-- 2 boinc boinc 538015852 Feb 15 04:02 EVNT.48466711._000058.pool.root.1
[2026-02-15 05:23:11] -rw-r--r-- 2 boinc boinc    597936 Feb 15 04:02 input.tar.gz
[2026-02-15 05:23:11] -rw-r--r-- 2 boinc boinc     15845 Feb 15 04:02 start_atlas.sh
[2026-02-15 05:23:11] drwxrwx--x 2 boinc boinc      4096 Feb 15 04:02 shared
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc         0 Feb 15 04:02 boinc_setup_complete
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc      6446 Feb 15 04:02 init_data.xml
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc         0 Feb 15 04:02 boinc_lockfile
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc      2498 Feb 15 04:02 pandaJob.out
[2026-02-15 05:23:11] -rw------- 1 boinc boinc   1000934 Feb 15 04:02 agis_schedconf.cvmfs.json
[2026-02-15 05:23:11] -rw------- 1 boinc boinc   1513015 Feb 15 04:02 agis_ddmendpoints.agis.ALL.json
[2026-02-15 05:23:11] -rw------- 1 boinc boinc       414 Feb 15 04:02 workernode_map.json
[2026-02-15 05:23:11] drwx------ 5 boinc boinc      4096 Feb 15 04:02 pilot3
[2026-02-15 05:23:11] -rw------- 1 boinc boinc 192739072 Feb 15 05:22 HITS.48466714._001964.pool.root.1
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc       530 Feb 15 05:22 boinc_task_state.xml
[2026-02-15 05:23:11] -rw------- 1 boinc boinc      1019 Feb 15 05:22 memory_monitor_summary.json
[2026-02-15 05:23:11] -rw------- 1 boinc boinc    273891 Feb 15 05:22 log.48466714._001964.job.log.tgz.1
[2026-02-15 05:23:11] -rw------- 1 boinc boinc      6284 Feb 15 05:22 heartbeat.json
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc      8192 Feb 15 05:23 boinc_mmap_file
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc        27 Feb 15 05:23 wrapper_checkpoint.txt
[2026-02-15 05:23:11] -rw------- 1 boinc boinc        95 Feb 15 05:23 pilot_heartbeat.json
[2026-02-15 05:23:11] -rw------- 1 boinc boinc       747 Feb 15 05:23 pilotlog.txt
[2026-02-15 05:23:11] -rw------- 1 boinc boinc    703491 Feb 15 05:23 log.48466714._001964.job.log.1
[2026-02-15 05:23:11] -rw------- 1 boinc boinc       357 Feb 15 05:23 output.list
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc       620 Feb 15 05:23 runtime_log
[2026-02-15 05:23:11] -rw------- 1 boinc boinc    993280 Feb 15 05:23 result.tar.gz
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc      8901 Feb 15 05:23 runtime_log.err
[2026-02-15 05:23:11] -rw------- 1 boinc boinc       658 Feb 15 05:23 GdHLDmSDdB9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmGsnKDm1bxCVo.diag
[2026-02-15 05:23:11] -rw-r--r-- 1 boinc boinc     12242 Feb 15 05:23 stderr.txt
[2026-02-15 05:23:11] HITS file was successfully produced:
[2026-02-15 05:23:11] -rw------- 1 boinc boinc 192739072 Feb 15 05:22 shared/HITS.pool.root.1
[2026-02-15 05:23:11]  *** Contents of shared directory: ***
[2026-02-15 05:23:11] total 715212
[2026-02-15 05:23:11] -rw-r--r-- 2 boinc boinc 538015852 Feb 15 04:02 ATLAS.root_0
[2026-02-15 05:23:11] -rw-r--r-- 2 boinc boinc    597936 Feb 15 04:02 input.tar.gz
[2026-02-15 05:23:11] -rw-r--r-- 2 boinc boinc     15845 Feb 15 04:02 start_atlas.sh
[2026-02-15 05:23:11] -rw------- 1 boinc boinc 192739072 Feb 15 05:22 HITS.pool.root.1
[2026-02-15 05:23:11] -rw------- 1 boinc boinc    993280 Feb 15 05:23 result.tar.gz
05:23:13 (1987834): run_atlas exited; CPU time 13666.478935
05:23:13 (1987834): called boinc_finish(0)

</stderr_txt>
]]>

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