Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:51:08 (312171): wrapper (7.7.26015): starting
07:51:08 (312171): wrapper: running run_atlas (--nthreads 3)
[2026-02-15 07:51:08] Arguments: --nthreads 3
[2026-02-15 07:51:08] Threads: 3
[2026-02-15 07:51:08] Checking for CVMFS
[2026-02-15 07:51:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-15 07:51:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-15 07:51:09] Running cvmfs_config stat atlas.cern.ch
[2026-02-15 07:51:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-15 07:51:09] 2.9.2.0 241658 487 63224 156259 1 50 28050189 36864001 0 130560 0 200797 99.980 19165 20968 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-15 07:51:09] CVMFS is ok
[2026-02-15 07:51:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-15 07:51:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-15 07:51:09] Further information can be found at the LHC@home message board.
[2026-02-15 07:51:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-15 07:51:09] Checking for apptainer binary...
[2026-02-15 07:51:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-15 07:51:09] Running /usr/bin/apptainer --version
[2026-02-15 07:51:09] apptainer version 1.4.1-1.1
[2026-02-15 07:51:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-15 07:51:09] magicA161a
[2026-02-15 07:51:09] apptainer works
[2026-02-15 07:51:09] Set ATHENA_PROC_NUMBER=3
[2026-02-15 07:51:09] Set ATHENA_CORE_NUMBER=3
[2026-02-15 07:51:09] Starting ATLAS job with PandaID=7010050227
[2026-02-15 07:51:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-15 09:16:47]  *** The last 200 lines of the pilot log: ***
[2026-02-15 09:16:47] 2026-02-15 08:16:16,185 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,185 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,185 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | job 7010050227 has completed (purged errors)
[2026-02-15 09:16:47] 2026-02-15 08:16:16,186 | INFO     | overall cleanup function is called
[2026-02-15 09:16:47] 2026-02-15 08:16:17,193 | INFO     | --- collectZombieJob: --- 10, [320631]
[2026-02-15 09:16:47] 2026-02-15 08:16:17,193 | INFO     | zombie collector waiting for pid 320631
[2026-02-15 09:16:47] 2026-02-15 08:16:17,193 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-15 09:16:47] 2026-02-15 08:16:17,193 | INFO     | collected zombie processes
[2026-02-15 09:16:47] 2026-02-15 08:16:17,193 | INFO     | will attempt to kill all subprocesses of pid=320631
[2026-02-15 09:16:47] 2026-02-15 08:16:17,236 | INFO     | process IDs to be killed: [320631] (in reverse order)
[2026-02-15 09:16:47] 2026-02-15 08:16:17,260 | WARNING  | found no corresponding commands to process id(s)
[2026-02-15 09:16:47] 2026-02-15 08:16:17,260 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-15 09:16:47] 2026-02-15 08:16:17,261 | INFO     | did not find any defunct processes belonging to 320631
[2026-02-15 09:16:47] 2026-02-15 08:16:17,262 | INFO     | did not find any defunct processes belonging to 320631
[2026-02-15 09:16:47] 2026-02-15 08:16:17,262 | INFO     | ready for new job
[2026-02-15 09:16:47] 2026-02-15 08:16:17,263 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-15 09:16:47] 2026-02-15 08:16:17,263 | INFO     | **************************************
[2026-02-15 09:16:47] 2026-02-15 08:16:17,263 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-15 09:16:47] 2026-02-15 08:16:17,263 | INFO     | **************************************
[2026-02-15 09:16:47] 2026-02-15 08:16:17,263 | INFO     | 
[2026-02-15 09:16:47] 2026-02-15 08:16:17,264 | INFO     | architecture information:
[2026-02-15 09:16:47] 2026-02-15 08:16:17,264 | INFO     | executing command: cat /etc/os-release
[2026-02-15 09:16:47] 2026-02-15 08:16:17,272 | INFO     | cat /etc/os-release:
[2026-02-15 09:16:47] NAME="CentOS Linux"
[2026-02-15 09:16:47] VERSION="7 (Core)"
[2026-02-15 09:16:47] ID="centos"
[2026-02-15 09:16:47] ID_LIKE="rhel fedora"
[2026-02-15 09:16:47] VERSION_ID="7"
[2026-02-15 09:16:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-15 09:16:47] ANSI_COLOR="0;31"
[2026-02-15 09:16:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-15 09:16:47] HOME_URL="https://www.centos.org/"
[2026-02-15 09:16:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-15 09:16:47] 
[2026-02-15 09:16:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-15 09:16:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-15 09:16:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-15 09:16:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-15 09:16:47] 
[2026-02-15 09:16:47] 2026-02-15 08:16:17,272 | INFO     | **************************************
[2026-02-15 09:16:47] 2026-02-15 08:16:17,773 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-15 09:16:47] 2026-02-15 08:16:17,786 | INFO     | sufficient remaining disk space (373332901888 B)
[2026-02-15 09:16:47] 2026-02-15 08:16:17,786 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-15 09:16:47] 2026-02-15 08:16:17,786 | INFO     | current server update state: UPDATING_FINAL
[2026-02-15 09:16:47] 2026-02-15 08:16:17,786 | INFO     | update_server=False
[2026-02-15 09:16:47] 2026-02-15 08:16:17,786 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-15 09:16:47] 2026-02-15 08:16:17,786 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-15 09:16:47] 2026-02-15 08:16:17,786 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-15 09:16:47] 2026-02-15 08:16:17,786 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-15 09:16:47] 2026-02-15 08:16:17,786 | INFO     | aborting loop
[2026-02-15 09:16:47] 2026-02-15 08:16:18,336 | INFO     | all payload control threads have been joined
[2026-02-15 09:16:47] 2026-02-15 08:16:18,418 | INFO     | all job control threads have been joined
[2026-02-15 09:16:47] 2026-02-15 08:16:18,644 | INFO     | all data control threads have been joined
[2026-02-15 09:16:47] 2026-02-15 08:16:18,791 | INFO     | [job] retrieve thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:18,791 | INFO     | [job] queue monitor thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:18,792 | INFO     | [job] job monitor thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:18,940 | INFO     | [data] copytool_in thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:19,244 | INFO     | [payload] failed_post thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:19,341 | INFO     | [payload] control thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:19,424 | INFO     | [job] control thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:19,649 | INFO     | [data] control thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:19,792 | INFO     | [data] copytool_out thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:19,797 | INFO     | [payload] execute_payloads thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:20,134 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-15 09:16:47] 2026-02-15 08:16:20,215 | INFO     | [job] validate thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:20,225 | INFO     | [job] create_data_payload thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:20,282 | INFO     | [payload] validate_pre thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:20,327 | INFO     | [payload] validate_post thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:24,138 | INFO     | [data] queue_monitor thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:25,220 | INFO     | [monitor] cgroup control has ended
[2026-02-15 09:16:47] 2026-02-15 08:16:28,210 | INFO     | job.realtimelogging is not enabled
[2026-02-15 09:16:47] 2026-02-15 08:16:29,212 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-15 09:16:47] 2026-02-15 08:16:29,567 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140227257014080)>', '<ExcThread(monitor, started 140226739541760)>']
[2026-02-15 09:16:47] 2026-02-15 08:16:34,592 | INFO     | all workflow threads have been joined
[2026-02-15 09:16:47] 2026-02-15 08:16:34,592 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-15 09:16:47] 2026-02-15 08:16:34,592 | INFO     | traces error code: 0
[2026-02-15 09:16:47] 2026-02-15 08:16:34,592 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-15 09:16:47] 2026-02-15 08:16:47,587 | INFO     | PID=316207 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-15 09:16:47] 2026-02-15 08:16:47,588 | INFO     | found 0 job(s) in 20 queues
[2026-02-15 09:16:47] 2026-02-15 08:16:47,588 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-15 09:16:47] 2026-02-15 08:16:47,588 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-15 09:16:47] 2026-02-15 08:16:47,588 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-15 09:16:47] 2026-02-15 08:16:47,588 | INFO     | [monitor] control thread has ended
[2026-02-15 09:16:47] 2026-02-15 08:16:47,642 [wrapper] ==== pilot stdout END ====
[2026-02-15 09:16:47] 2026-02-15 08:16:47,644 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-15 09:16:47] 2026-02-15 08:16:47,647 [wrapper] pilotpid: 316207
[2026-02-15 09:16:47] 2026-02-15 08:16:47,649 [wrapper] Pilot exit status: 0
[2026-02-15 09:16:47] 2026-02-15 08:16:47,656 [wrapper] pandaids: 7010050227
[2026-02-15 09:16:47] 2026-02-15 08:16:47,673 [wrapper] cleanup supervisor_pilot  325678 316208
[2026-02-15 09:16:47] 2026-02-15 08:16:47,675 [wrapper] Test setup, not cleaning
[2026-02-15 09:16:47] 2026-02-15 08:16:47,677 [wrapper] apfmon messages muted
[2026-02-15 09:16:47] 2026-02-15 08:16:47,679 [wrapper] ==== wrapper stdout END ====
[2026-02-15 09:16:47] 2026-02-15 08:16:47,681 [wrapper] ==== wrapper stderr END ====
[2026-02-15 09:16:47]  *** Error codes and diagnostics ***
[2026-02-15 09:16:47]     "exeErrorCode": 0,
[2026-02-15 09:16:47]     "exeErrorDiag": "",
[2026-02-15 09:16:47]     "pilotErrorCode": 0,
[2026-02-15 09:16:47]     "pilotErrorDiag": "",
[2026-02-15 09:16:47]  *** Listing of results directory ***
[2026-02-15 09:16:47] total 672960
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc    584627 Feb 15 00:03 pilot3.tar.gz
[2026-02-15 09:16:47] -rwx------ 1 boinc boinc     36322 Feb 15 00:04 runpilot2-wrapper.sh
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc      5111 Feb 15 00:07 queuedata.json
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc       100 Feb 15 07:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-15 09:16:47] -rwxr-xr-x 1 boinc boinc      7986 Feb 15 07:51 run_atlas
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc       105 Feb 15 07:51 job.xml
[2026-02-15 09:16:47] -rw-r--r-- 2 boinc boinc 500158461 Feb 15 07:51 EVNT.48318016._000210.pool.root.1
[2026-02-15 09:16:47] -rw-r--r-- 2 boinc boinc    597946 Feb 15 07:51 input.tar.gz
[2026-02-15 09:16:47] -rw-r--r-- 2 boinc boinc     15845 Feb 15 07:51 start_atlas.sh
[2026-02-15 09:16:47] drwxrwx--x 2 boinc boinc      4096 Feb 15 07:51 shared
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc         0 Feb 15 07:51 boinc_setup_complete
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc      6448 Feb 15 07:51 init_data.xml
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc         0 Feb 15 07:51 boinc_lockfile
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc      2523 Feb 15 07:51 pandaJob.out
[2026-02-15 09:16:47] -rw------- 1 boinc boinc   1000934 Feb 15 07:51 agis_schedconf.cvmfs.json
[2026-02-15 09:16:47] -rw------- 1 boinc boinc   1513015 Feb 15 07:51 agis_ddmendpoints.agis.ALL.json
[2026-02-15 09:16:47] -rw------- 1 boinc boinc       419 Feb 15 07:51 workernode_map.json
[2026-02-15 09:16:47] drwx------ 5 boinc boinc      4096 Feb 15 07:51 pilot3
[2026-02-15 09:16:47] -rw------- 1 boinc boinc 183024040 Feb 15 09:15 HITS.48318018._010858.pool.root.1
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc       530 Feb 15 09:15 boinc_task_state.xml
[2026-02-15 09:16:47] -rw------- 1 boinc boinc      1017 Feb 15 09:16 memory_monitor_summary.json
[2026-02-15 09:16:47] -rw------- 1 boinc boinc    261210 Feb 15 09:16 log.48318018._010858.job.log.tgz.1
[2026-02-15 09:16:47] -rw------- 1 boinc boinc      6298 Feb 15 09:16 heartbeat.json
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc        27 Feb 15 09:16 wrapper_checkpoint.txt
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc      8192 Feb 15 09:16 boinc_mmap_file
[2026-02-15 09:16:47] -rw------- 1 boinc boinc       746 Feb 15 09:16 pilotlog.txt
[2026-02-15 09:16:47] -rw------- 1 boinc boinc        95 Feb 15 09:16 pilot_heartbeat.json
[2026-02-15 09:16:47] -rw------- 1 boinc boinc    743987 Feb 15 09:16 log.48318018._010858.job.log.1
[2026-02-15 09:16:47] -rw------- 1 boinc boinc       357 Feb 15 09:16 output.list
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc       620 Feb 15 09:16 runtime_log
[2026-02-15 09:16:47] -rw------- 1 boinc boinc   1024000 Feb 15 09:16 result.tar.gz
[2026-02-15 09:16:47] -rw------- 1 boinc boinc       661 Feb 15 09:16 vPJLDmHsdB9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmdCoKDmjkxrun.diag
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc      8916 Feb 15 09:16 runtime_log.err
[2026-02-15 09:16:47] -rw-r--r-- 1 boinc boinc     12533 Feb 15 09:16 stderr.txt
[2026-02-15 09:16:47] HITS file was successfully produced:
[2026-02-15 09:16:47] -rw------- 1 boinc boinc 183024040 Feb 15 09:15 shared/HITS.pool.root.1
[2026-02-15 09:16:47]  *** Contents of shared directory: ***
[2026-02-15 09:16:47] total 668780
[2026-02-15 09:16:47] -rw-r--r-- 2 boinc boinc 500158461 Feb 15 07:51 ATLAS.root_0
[2026-02-15 09:16:47] -rw-r--r-- 2 boinc boinc    597946 Feb 15 07:51 input.tar.gz
[2026-02-15 09:16:47] -rw-r--r-- 2 boinc boinc     15845 Feb 15 07:51 start_atlas.sh
[2026-02-15 09:16:47] -rw------- 1 boinc boinc 183024040 Feb 15 09:15 HITS.pool.root.1
[2026-02-15 09:16:47] -rw------- 1 boinc boinc   1024000 Feb 15 09:16 result.tar.gz
09:16:49 (312171): run_atlas exited; CPU time 14638.710404
09:16:49 (312171): called boinc_finish(0)

</stderr_txt>
]]>

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