Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:41:12 (256221): wrapper (7.7.26015): starting
01:41:12 (256221): wrapper: running run_atlas (--nthreads 3)
[2026-02-15 01:41:12] Arguments: --nthreads 3
[2026-02-15 01:41:12] Threads: 3
[2026-02-15 01:41:12] Checking for CVMFS
[2026-02-15 01:41:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-15 01:41:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-15 01:41:13] Running cvmfs_config stat atlas.cern.ch
[2026-02-15 01:41:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-15 01:41:13] 2.9.2.0 241658 117 50164 156250 2 50 28004135 36864000 0 130560 0 40486 99.954 6879 23968 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-15 01:41:13] CVMFS is ok
[2026-02-15 01:41:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-15 01:41:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-15 01:41:13] Further information can be found at the LHC@home message board.
[2026-02-15 01:41:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-15 01:41:13] Checking for apptainer binary...
[2026-02-15 01:41:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-15 01:41:13] Running /usr/bin/apptainer --version
[2026-02-15 01:41:13] apptainer version 1.4.1-1.1
[2026-02-15 01:41:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-15 01:41:13] magicA161a
[2026-02-15 01:41:13] apptainer works
[2026-02-15 01:41:13] Set ATHENA_PROC_NUMBER=3
[2026-02-15 01:41:13] Set ATHENA_CORE_NUMBER=3
[2026-02-15 01:41:13] Starting ATLAS job with PandaID=7014648459
[2026-02-15 01:41:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-15 03:39:38]  *** The last 200 lines of the pilot log: ***
[2026-02-15 03:39:38] 2026-02-15 02:39:06,780 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | job 7014648459 has completed (purged errors)
[2026-02-15 03:39:38] 2026-02-15 02:39:06,781 | INFO     | overall cleanup function is called
[2026-02-15 03:39:38] 2026-02-15 02:39:07,788 | INFO     | --- collectZombieJob: --- 10, [264681]
[2026-02-15 03:39:38] 2026-02-15 02:39:07,788 | INFO     | zombie collector waiting for pid 264681
[2026-02-15 03:39:38] 2026-02-15 02:39:07,788 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-15 03:39:38] 2026-02-15 02:39:07,788 | INFO     | collected zombie processes
[2026-02-15 03:39:38] 2026-02-15 02:39:07,788 | INFO     | will attempt to kill all subprocesses of pid=264681
[2026-02-15 03:39:38] 2026-02-15 02:39:07,829 | INFO     | process IDs to be killed: [264681] (in reverse order)
[2026-02-15 03:39:38] 2026-02-15 02:39:07,854 | WARNING  | found no corresponding commands to process id(s)
[2026-02-15 03:39:38] 2026-02-15 02:39:07,854 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-15 03:39:38] 2026-02-15 02:39:07,855 | INFO     | did not find any defunct processes belonging to 264681
[2026-02-15 03:39:38] 2026-02-15 02:39:07,856 | INFO     | did not find any defunct processes belonging to 264681
[2026-02-15 03:39:38] 2026-02-15 02:39:07,856 | INFO     | ready for new job
[2026-02-15 03:39:38] 2026-02-15 02:39:07,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-15 03:39:38] 2026-02-15 02:39:07,857 | INFO     | **************************************
[2026-02-15 03:39:38] 2026-02-15 02:39:07,857 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-15 03:39:38] 2026-02-15 02:39:07,857 | INFO     | **************************************
[2026-02-15 03:39:38] 2026-02-15 02:39:07,857 | INFO     | 
[2026-02-15 03:39:38] 2026-02-15 02:39:07,858 | INFO     | architecture information:
[2026-02-15 03:39:38] 2026-02-15 02:39:07,858 | INFO     | executing command: cat /etc/os-release
[2026-02-15 03:39:38] 2026-02-15 02:39:07,866 | INFO     | cat /etc/os-release:
[2026-02-15 03:39:38] NAME="CentOS Linux"
[2026-02-15 03:39:38] VERSION="7 (Core)"
[2026-02-15 03:39:38] ID="centos"
[2026-02-15 03:39:38] ID_LIKE="rhel fedora"
[2026-02-15 03:39:38] VERSION_ID="7"
[2026-02-15 03:39:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-15 03:39:38] ANSI_COLOR="0;31"
[2026-02-15 03:39:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-15 03:39:38] HOME_URL="https://www.centos.org/"
[2026-02-15 03:39:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-15 03:39:38] 
[2026-02-15 03:39:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-15 03:39:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-15 03:39:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-15 03:39:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-15 03:39:38] 
[2026-02-15 03:39:38] 2026-02-15 02:39:07,866 | INFO     | **************************************
[2026-02-15 03:39:38] 2026-02-15 02:39:08,370 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-15 03:39:38] 2026-02-15 02:39:08,382 | INFO     | sufficient remaining disk space (375413276672 B)
[2026-02-15 03:39:38] 2026-02-15 02:39:08,382 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-15 03:39:38] 2026-02-15 02:39:08,383 | INFO     | current server update state: UPDATING_FINAL
[2026-02-15 03:39:38] 2026-02-15 02:39:08,383 | INFO     | update_server=False
[2026-02-15 03:39:38] 2026-02-15 02:39:08,383 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-15 03:39:38] 2026-02-15 02:39:08,383 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-15 03:39:38] 2026-02-15 02:39:08,383 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-15 03:39:38] 2026-02-15 02:39:08,383 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-15 03:39:38] 2026-02-15 02:39:08,383 | INFO     | aborting loop
[2026-02-15 03:39:38] 2026-02-15 02:39:09,087 | INFO     | all data control threads have been joined
[2026-02-15 03:39:38] 2026-02-15 02:39:09,388 | INFO     | [job] retrieve thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:09,389 | INFO     | [job] queue monitor thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:09,389 | INFO     | [job] job monitor thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:09,478 | INFO     | [data] copytool_in thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:09,740 | INFO     | all payload control threads have been joined
[2026-02-15 03:39:38] 2026-02-15 02:39:09,806 | INFO     | all job control threads have been joined
[2026-02-15 03:39:38] 2026-02-15 02:39:09,887 | INFO     | [payload] failed_post thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:10,092 | INFO     | [data] control thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:10,277 | INFO     | [payload] execute_payloads thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:10,389 | INFO     | [data] copytool_out thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:10,694 | INFO     | [job] validate thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:10,744 | INFO     | [job] create_data_payload thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:10,746 | INFO     | [payload] control thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:10,766 | INFO     | [payload] validate_pre thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:10,803 | INFO     | [payload] validate_post thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:10,811 | INFO     | [job] control thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:11,564 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-15 03:39:38] 2026-02-15 02:39:15,571 | INFO     | [data] queue_monitor thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:18,732 | INFO     | job.realtimelogging is not enabled
[2026-02-15 03:39:38] 2026-02-15 02:39:19,738 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-15 03:39:38] 2026-02-15 02:39:30,636 | INFO     | [monitor] cgroup control has ended
[2026-02-15 03:39:38] 2026-02-15 02:39:32,282 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140593782523712)>', '<ExcThread(monitor, started 140593422374656)>']
[2026-02-15 03:39:38] 2026-02-15 02:39:37,284 | INFO     | all workflow threads have been joined
[2026-02-15 03:39:38] 2026-02-15 02:39:37,284 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-15 03:39:38] 2026-02-15 02:39:37,284 | INFO     | traces error code: 0
[2026-02-15 03:39:38] 2026-02-15 02:39:37,284 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-15 03:39:38] 2026-02-15 02:39:38,230 | INFO     | PID=260263 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-15 03:39:38] 2026-02-15 02:39:38,230 | INFO     | found 0 job(s) in 20 queues
[2026-02-15 03:39:38] 2026-02-15 02:39:38,230 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-15 03:39:38] 2026-02-15 02:39:38,230 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-15 03:39:38] 2026-02-15 02:39:38,230 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-15 03:39:38] 2026-02-15 02:39:38,230 | INFO     | [monitor] control thread has ended
[2026-02-15 03:39:38] 2026-02-15 02:39:38,276 [wrapper] ==== pilot stdout END ====
[2026-02-15 03:39:38] 2026-02-15 02:39:38,278 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-15 03:39:38] 2026-02-15 02:39:38,281 [wrapper] pilotpid: 260263
[2026-02-15 03:39:38] 2026-02-15 02:39:38,283 [wrapper] Pilot exit status: 0
[2026-02-15 03:39:38] 2026-02-15 02:39:38,290 [wrapper] pandaids: 7014648459
[2026-02-15 03:39:38] 2026-02-15 02:39:38,305 [wrapper] cleanup supervisor_pilot  269945 260264
[2026-02-15 03:39:38] 2026-02-15 02:39:38,307 [wrapper] Test setup, not cleaning
[2026-02-15 03:39:38] 2026-02-15 02:39:38,310 [wrapper] apfmon messages muted
[2026-02-15 03:39:38] 2026-02-15 02:39:38,312 [wrapper] ==== wrapper stdout END ====
[2026-02-15 03:39:38] 2026-02-15 02:39:38,314 [wrapper] ==== wrapper stderr END ====
[2026-02-15 03:39:38]  *** Error codes and diagnostics ***
[2026-02-15 03:39:38]     "exeErrorCode": 0,
[2026-02-15 03:39:38]     "exeErrorDiag": "",
[2026-02-15 03:39:38]     "pilotErrorCode": 0,
[2026-02-15 03:39:38]     "pilotErrorDiag": "",
[2026-02-15 03:39:38]  *** Listing of results directory ***
[2026-02-15 03:39:38] total 941888
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc    584627 Feb 14 22:20 pilot3.tar.gz
[2026-02-15 03:39:38] -rwx------ 1 boinc boinc     36322 Feb 14 22:38 runpilot2-wrapper.sh
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc      5111 Feb 14 22:42 queuedata.json
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc       100 Feb 15 01:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-15 03:39:38] -rwxr-xr-x 1 boinc boinc      7986 Feb 15 01:41 run_atlas
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc       105 Feb 15 01:41 job.xml
[2026-02-15 03:39:38] -rw-r--r-- 2 boinc boinc 680415445 Feb 15 01:41 EVNT.48431094._000890.pool.root.1
[2026-02-15 03:39:38] -rw-r--r-- 2 boinc boinc    597959 Feb 15 01:41 input.tar.gz
[2026-02-15 03:39:38] -rw-r--r-- 2 boinc boinc     15845 Feb 15 01:41 start_atlas.sh
[2026-02-15 03:39:38] drwxrwx--x 2 boinc boinc      4096 Feb 15 01:41 shared
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc         0 Feb 15 01:41 boinc_setup_complete
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc      6448 Feb 15 01:41 init_data.xml
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc         0 Feb 15 01:41 boinc_lockfile
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc      2557 Feb 15 01:41 pandaJob.out
[2026-02-15 03:39:38] -rw------- 1 boinc boinc   1000926 Feb 15 01:41 agis_schedconf.cvmfs.json
[2026-02-15 03:39:38] -rw------- 1 boinc boinc   1513015 Feb 15 01:41 agis_ddmendpoints.agis.ALL.json
[2026-02-15 03:39:38] -rw------- 1 boinc boinc       427 Feb 15 01:41 workernode_map.json
[2026-02-15 03:39:38] drwx------ 5 boinc boinc      4096 Feb 15 01:41 pilot3
[2026-02-15 03:39:38] -rw------- 1 boinc boinc 277566224 Feb 15 03:38 HITS.48431096._047121.pool.root.1
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc       530 Feb 15 03:38 boinc_task_state.xml
[2026-02-15 03:39:38] -rw------- 1 boinc boinc        95 Feb 15 03:38 pilot_heartbeat.json
[2026-02-15 03:39:38] -rw------- 1 boinc boinc      1032 Feb 15 03:38 memory_monitor_summary.json
[2026-02-15 03:39:38] -rw------- 1 boinc boinc    281524 Feb 15 03:39 log.48431096._047121.job.log.tgz.1
[2026-02-15 03:39:38] -rw------- 1 boinc boinc      6316 Feb 15 03:39 heartbeat.json
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc      8192 Feb 15 03:39 boinc_mmap_file
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc        27 Feb 15 03:39 wrapper_checkpoint.txt
[2026-02-15 03:39:38] -rw------- 1 boinc boinc       746 Feb 15 03:39 pilotlog.txt
[2026-02-15 03:39:38] -rw------- 1 boinc boinc   1013998 Feb 15 03:39 log.48431096._047121.job.log.1
[2026-02-15 03:39:38] -rw------- 1 boinc boinc       357 Feb 15 03:39 output.list
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc       620 Feb 15 03:39 runtime_log
[2026-02-15 03:39:38] -rw------- 1 boinc boinc   1310720 Feb 15 03:39 result.tar.gz
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc      8916 Feb 15 03:39 runtime_log.err
[2026-02-15 03:39:38] -rw------- 1 boinc boinc       661 Feb 15 03:39 OvBMDmMWcB9n9Rq4apOajLDm4fhM0noT9bVooX4SDmRnmKDmrdsOTn.diag
[2026-02-15 03:39:38] -rw-r--r-- 1 boinc boinc     12910 Feb 15 03:39 stderr.txt
[2026-02-15 03:39:38] HITS file was successfully produced:
[2026-02-15 03:39:38] -rw------- 1 boinc boinc 277566224 Feb 15 03:38 shared/HITS.pool.root.1
[2026-02-15 03:39:38]  *** Contents of shared directory: ***
[2026-02-15 03:39:38] total 937424
[2026-02-15 03:39:38] -rw-r--r-- 2 boinc boinc 680415445 Feb 15 01:41 ATLAS.root_0
[2026-02-15 03:39:38] -rw-r--r-- 2 boinc boinc    597959 Feb 15 01:41 input.tar.gz
[2026-02-15 03:39:38] -rw-r--r-- 2 boinc boinc     15845 Feb 15 01:41 start_atlas.sh
[2026-02-15 03:39:38] -rw------- 1 boinc boinc 277566224 Feb 15 03:38 HITS.pool.root.1
[2026-02-15 03:39:38] -rw------- 1 boinc boinc   1310720 Feb 15 03:39 result.tar.gz
03:39:39 (256221): run_atlas exited; CPU time 20403.282147
03:39:39 (256221): called boinc_finish(0)

</stderr_txt>
]]>

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