Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:28:22 (2961): wrapper (7.7.26015): starting
19:28:22 (2961): wrapper: running run_atlas (--nthreads 12)
[2026-02-12 19:28:22] Arguments: --nthreads 12
[2026-02-12 19:28:22] Threads: 12
[2026-02-12 19:28:22] Checking for CVMFS
[2026-02-12 19:28:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 19:28:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 19:28:23] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 19:28:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 19:28:23] 2.11.2.0 2937 400722 99896 156176 0 1 10276995 20275200 1 130560 1 173701201 99.953 24127898 17733 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-12 19:28:23] CVMFS is ok
[2026-02-12 19:28:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 19:28:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 19:28:23] Further information can be found at the LHC@home message board.
[2026-02-12 19:28:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 19:28:23] Checking for apptainer binary...
[2026-02-12 19:28:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 19:28:23] Running /usr/bin/apptainer --version
[2026-02-12 19:28:23] apptainer version 1.3.2-1.el7
[2026-02-12 19:28:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 19:28:24] c-205-8.aglt2.org
[2026-02-12 19:28:24] apptainer works
[2026-02-12 19:28:24] Set ATHENA_PROC_NUMBER=12
[2026-02-12 19:28:24] Set ATHENA_CORE_NUMBER=12
[2026-02-12 19:28:24] Starting ATLAS job with PandaID=7009662285
[2026-02-12 19:28:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 20:38:12]  *** The last 200 lines of the pilot log: ***
[2026-02-12 20:38:12]  filetype=log
[2026-02-12 20:38:12]  guid=3b9acc80-c5dd-49e9-9798-fecf6367ff0b
[2026-02-12 20:38:12]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-12 20:38:12]  is_altstaged=None
[2026-02-12 20:38:12]  is_tar=False
[2026-02-12 20:38:12]  lfn=log.48442098._008118.job.log.tgz.1
[2026-02-12 20:38:12]  mtime=0
[2026-02-12 20:38:12]  protocol_id=None
[2026-02-12 20:38:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-12 20:38:12]  replicas=None
[2026-02-12 20:38:12]  scope=mc23_13p6TeV
[2026-02-12 20:38:12]  status=None
[2026-02-12 20:38:12]  status_code=0
[2026-02-12 20:38:12]  storage_token=
[2026-02-12 20:38:12]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7009662285/log.48442098._008118.job.log.tgz.1
[2026-02-12 20:38:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/18/log.48442098._008118.job.log.tgz.1
[2026-02-12 20:38:12]  workdir=None
[2026-02-12 20:38:12] ]
[2026-02-12 20:38:12] 2026-02-13 01:37:37,398 | INFO     | transferring file log.48442098._008118.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7009662285/log.48442098._008118.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-12 20:38:12] 2026-02-13 01:37:37,398 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7009662285/log.48442098._008118.job.log.tgz.1 /tmp/boinchome/slots/0/log.48442098._008118.job
[2026-02-12 20:38:12] 2026-02-13 01:37:37,420 | INFO     | adding to output.list: log.48442098._008118.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/18/log.48442098._008118.job.log.tg
[2026-02-12 20:38:12] 2026-02-13 01:37:37,421 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-12 20:38:12] 2026-02-13 01:37:37,421 | INFO     | summary of transferred files:
[2026-02-12 20:38:12] 2026-02-13 01:37:37,421 | INFO     |  -- lfn=log.48442098._008118.job.log.tgz.1, status_code=0, status=transferred
[2026-02-12 20:38:12] 2026-02-13 01:37:37,421 | INFO     | stage-out finished correctly
[2026-02-12 20:38:12] 2026-02-13 01:37:39,284 | INFO     | time since job start (4133s) is within the limit (349056.0s)
[2026-02-12 20:38:12] 2026-02-13 01:37:39,957 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-12 20:38:12] 2026-02-13 01:37:40,034 | INFO     | job 7009662285 has state=finished
[2026-02-12 20:38:12] 2026-02-13 01:37:40,034 | INFO     | preparing for final server update for job 7009662285 in state='finished'
[2026-02-12 20:38:12] 2026-02-13 01:37:40,034 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7009662285/jobReport.json
[2026-02-12 20:38:12] 2026-02-13 01:37:40,037 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-12 20:38:12] 2026-02-13 01:37:40,038 | INFO     | this job has now completed (state=finished)
[2026-02-12 20:38:12] 2026-02-13 01:37:40,038 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-12 20:38:12] 2026-02-13 01:37:40,038 | INFO     | log transfer has been attempted: DONE
[2026-02-12 20:38:12] 2026-02-13 01:37:40,038 | INFO     | job 7009662285 has finished - writing final server update
[2026-02-12 20:38:12] 2026-02-13 01:37:40,038 | INFO     | total number of processed events: 400 (read)
[2026-02-12 20:38:12] 2026-02-13 01:37:40,040 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7009662285/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 20:38:12] 2026-02-13 01:37:40,041 | INFO     | extracted standard info from prmon json
[2026-02-12 20:38:12] 2026-02-13 01:37:40,041 | INFO     | extracted standard memory fields from prmon json
[2026-02-12 20:38:12] 2026-02-13 01:37:40,041 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-12 20:38:12] 2026-02-13 01:37:40,041 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-12 20:38:12] 2026-02-13 01:37:40,041 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-12 20:38:12] 2026-02-13 01:37:40,043 | INFO     | fitting pss+swap vs Time
[2026-02-12 20:38:12] 2026-02-13 01:37:40,043 | INFO     | sum of square deviations: 70364110.0
[2026-02-12 20:38:12] 2026-02-13 01:37:40,043 | INFO     | sum of deviations: -6078368058.0
[2026-02-12 20:38:12] 2026-02-13 01:37:40,043 | INFO     | mean x: 1770944686.0
[2026-02-12 20:38:12] 2026-02-13 01:37:40,043 | INFO     | mean y: 2870111.9672131147
[2026-02-12 20:38:12] 2026-02-13 01:37:40,043 | INFO     | intersect: 152985031214.65494
[2026-02-12 20:38:12] 2026-02-13 01:37:40,044 | INFO     | chi2: 0.0591072636630037
[2026-02-12 20:38:12] 2026-02-13 01:37:40,044 | INFO     | current memory leak: -86.38 B/s (using 61 data points, chi2=0.06)
[2026-02-12 20:38:12] 2026-02-13 01:37:40,044 | INFO     | could have reported an average CPU frequency of 1684 MHz (6 samples)
[2026-02-12 20:38:12] 2026-02-13 01:37:40,044 | INFO     | ..............................
[2026-02-12 20:38:12] 2026-02-13 01:37:40,045 | INFO     | . Timing measurements:
[2026-02-12 20:38:12] 2026-02-13 01:37:40,045 | INFO     | . get job = 0 s
[2026-02-12 20:38:12] 2026-02-13 01:37:40,045 | INFO     | . initial setup = 7 s
[2026-02-12 20:38:12] 2026-02-13 01:37:40,045 | INFO     | . payload setup = 7 s
[2026-02-12 20:38:12] 2026-02-13 01:37:40,045 | INFO     | . stage-in = 0 s
[2026-02-12 20:38:12] 2026-02-13 01:37:40,045 | INFO     | . payload execution = 4108 s
[2026-02-12 20:38:12] 2026-02-13 01:37:40,045 | INFO     | . stage-out = 0 s
[2026-02-12 20:38:12] 2026-02-13 01:37:40,045 | INFO     | . log creation = 0 s
[2026-02-12 20:38:12] 2026-02-13 01:37:40,045 | INFO     | ..............................
[2026-02-12 20:38:12] 2026-02-13 01:37:40,120 | INFO     | 
[2026-02-12 20:38:12] 2026-02-13 01:37:40,121 | INFO     | job summary report
[2026-02-12 20:38:12] 2026-02-13 01:37:40,121 | INFO     | --------------------------------------------------
[2026-02-12 20:38:12] 2026-02-13 01:37:40,121 | INFO     | PanDA job id: 7009662285
[2026-02-12 20:38:12] 2026-02-13 01:37:40,121 | INFO     | task id: 48442098
[2026-02-12 20:38:12] 2026-02-13 01:37:40,121 | INFO     | errors: (none)
[2026-02-12 20:38:12] 2026-02-13 01:37:40,121 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-12 20:38:12] 2026-02-13 01:37:40,121 | INFO     | pilot state: finished 
[2026-02-12 20:38:12] 2026-02-13 01:37:40,121 | INFO     | transexitcode: 0
[2026-02-12 20:38:12] 2026-02-13 01:37:40,121 | INFO     | exeerrorcode: 0
[2026-02-12 20:38:12] 2026-02-13 01:37:40,122 | INFO     | exeerrordiag: 
[2026-02-12 20:38:12] 2026-02-13 01:37:40,122 | INFO     | exitcode: 0
[2026-02-12 20:38:12] 2026-02-13 01:37:40,122 | INFO     | exitmsg: OK
[2026-02-12 20:38:12] 2026-02-13 01:37:40,122 | INFO     | cpuconsumptiontime: 45008 s
[2026-02-12 20:38:12] 2026-02-13 01:37:40,122 | INFO     | nevents: 400
[2026-02-12 20:38:12] 2026-02-13 01:37:40,122 | INFO     | neventsw: 0
[2026-02-12 20:38:12] 2026-02-13 01:37:40,122 | INFO     | pid: 11440
[2026-02-12 20:38:12] 2026-02-13 01:37:40,122 | INFO     | pgrp: 11440
[2026-02-12 20:38:12] 2026-02-13 01:37:40,122 | INFO     | corecount: 12
[2026-02-12 20:38:12] 2026-02-13 01:37:40,122 | INFO     | event service: False
[2026-02-12 20:38:12] 2026-02-13 01:37:40,123 | INFO     | sizes: {0: 2282222, 11: 2282222, 4119: 2308086, 4120: 2317084, 4122: 2317334}
[2026-02-12 20:38:12] 2026-02-13 01:37:40,123 | INFO     | --------------------------------------------------
[2026-02-12 20:38:12] 2026-02-13 01:37:40,123 | INFO     | 
[2026-02-12 20:38:12] 2026-02-13 01:37:40,123 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-12 20:38:12] 2026-02-13 01:37:40,149 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,149 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,149 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,150 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,150 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,150 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,150 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,150 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,150 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,151 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,151 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,151 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,151 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,151 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,151 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,151 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,152 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,152 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 20:38:12] 2026-02-13 01:37:40,152 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,152 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 20:38:12] 2026-02-13 01:37:40,152 | INFO     | job 7009662285 has completed (purged errors)
[2026-02-12 20:38:12] 2026-02-13 01:37:40,153 | INFO     | overall cleanup function is called
[2026-02-12 20:38:12] 2026-02-13 01:37:41,161 | INFO     | --- collectZombieJob: --- 10, [11440]
[2026-02-12 20:38:12] 2026-02-13 01:37:41,161 | INFO     | zombie collector waiting for pid 11440
[2026-02-12 20:38:12] 2026-02-13 01:37:41,161 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 20:38:12] 2026-02-13 01:37:41,162 | INFO     | collected zombie processes
[2026-02-12 20:38:12] 2026-02-13 01:37:41,162 | INFO     | will attempt to kill all subprocesses of pid=11440
[2026-02-12 20:38:12] 2026-02-13 01:37:41,256 | INFO     | process IDs to be killed: [11440] (in reverse order)
[2026-02-12 20:38:12] 2026-02-13 01:37:41,309 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 20:38:12] 2026-02-13 01:37:41,310 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 20:38:12] 2026-02-13 01:37:41,314 | INFO     | did not find any defunct processes belonging to 11440
[2026-02-12 20:38:12] 2026-02-13 01:37:41,317 | INFO     | did not find any defunct processes belonging to 11440
[2026-02-12 20:38:12] 2026-02-13 01:37:41,317 | INFO     | ready for new job
[2026-02-12 20:38:12] 2026-02-13 01:37:41,318 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 20:38:12] 2026-02-13 01:37:41,319 | INFO     | **************************************
[2026-02-12 20:38:12] 2026-02-13 01:37:41,319 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 20:38:12] 2026-02-13 01:37:41,319 | INFO     | **************************************
[2026-02-12 20:38:12] 2026-02-13 01:37:41,319 | INFO     | 
[2026-02-12 20:38:12] 2026-02-13 01:37:41,320 | INFO     | architecture information:
[2026-02-12 20:38:12] 2026-02-13 01:37:41,320 | INFO     | executing command: cat /etc/os-release
[2026-02-12 20:38:12] 2026-02-13 01:37:41,336 | INFO     | cat /etc/os-release:
[2026-02-12 20:38:12] NAME="CentOS Linux"
[2026-02-12 20:38:12] VERSION="7 (Core)"
[2026-02-12 20:38:12] ID="centos"
[2026-02-12 20:38:12] ID_LIKE="rhel fedora"
[2026-02-12 20:38:12] VERSION_ID="7"
[2026-02-12 20:38:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 20:38:12] ANSI_COLOR="0;31"
[2026-02-12 20:38:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 20:38:12] HOME_URL="https://www.centos.org/"
[2026-02-12 20:38:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 20:38:12] 
[2026-02-12 20:38:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 20:38:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 20:38:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 20:38:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 20:38:12] 
[2026-02-12 20:38:12] 2026-02-13 01:37:41,336 | INFO     | **************************************
[2026-02-12 20:38:12] 2026-02-13 01:37:41,612 | WARNING  | process 11440 can no longer be monitored (due to stat problems) - aborting
[2026-02-12 20:38:12] 2026-02-13 01:37:41,687 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 20:38:12] 2026-02-13 01:37:41,776 | INFO     | number of running child processes to parent process 11440: 1
[2026-02-12 20:38:12] 2026-02-13 01:37:41,777 | INFO     | maximum number of monitored processes: 6
[2026-02-12 20:38:12] 2026-02-13 01:37:41,777 | INFO     | aborting job monitoring since job object (job id=7009662285) has expired
[2026-02-12 20:38:12] 2026-02-13 01:37:41,839 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-12 20:38:12] 2026-02-13 01:37:41,856 | INFO     | sufficient remaining disk space (25909264384 B)
[2026-02-12 20:38:12] 2026-02-13 01:37:41,856 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 20:38:12] 2026-02-13 01:37:41,856 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 20:38:12] 2026-02-13 01:37:41,857 | INFO     | update_server=False
[2026-02-12 20:38:12] 2026-02-13 01:37:41,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 20:38:12] 2026-02-13 01:37:41,857 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 20:38:12] 2026-02-13 01:37:41,857 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 20:38:12] 2026-02-13 01:37:41,858 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 20:38:12] 2026-02-13 01:37:41,858 | INFO     | will abort loop
[2026-02-12 20:38:12] 2026-02-13 01:37:41,962 | INFO     | all data control threads have been joined
[2026-02-12 20:38:12] 2026-02-13 01:37:42,657 | INFO     | all job control threads have been joined
[2026-02-12 20:38:12] 2026-02-13 01:37:42,859 | INFO     | [job] retrieve thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:42,862 | INFO     | [job] job monitor thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:42,863 | INFO     | [job] queue monitor thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:42,887 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:42,968 | INFO     | [data] control thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:42,997 | INFO     | [payload] failed_post thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:43,016 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 20:38:12] 2026-02-13 01:37:43,079 | INFO     | [data] copytool_in thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:43,225 | INFO     | all payload control threads have been joined
[2026-02-12 20:38:12] 2026-02-13 01:37:43,614 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:43,662 | INFO     | [job] control thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:44,054 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:44,057 | INFO     | [job] validate thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:44,088 | INFO     | [payload] validate_post thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:44,231 | INFO     | [payload] control thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:44,248 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:45,022 | INFO     | [data] copytool_out thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:45,863 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 20:38:12] 2026-02-13 01:37:52,626 | INFO     | [monitor] cgroup control has ended
[2026-02-12 20:38:12] 2026-02-13 01:37:54,271 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140027630430016)>', '<ExcThread(monitor, started 140027174565632)>']
[2026-02-12 20:38:12] 2026-02-13 01:37:59,281 | INFO     | all workflow threads have been joined
[2026-02-12 20:38:12] 2026-02-13 01:37:59,281 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 20:38:12] 2026-02-13 01:37:59,281 | INFO     | traces error code: 0
[2026-02-12 20:38:12] 2026-02-13 01:37:59,282 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 20:38:12] 2026-02-13 01:38:12,467 | INFO     | PID=7017 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-12 20:38:12] 2026-02-13 01:38:12,468 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 20:38:12] 2026-02-13 01:38:12,468 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 20:38:12] 2026-02-13 01:38:12,468 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 20:38:12] 2026-02-13 01:38:12,468 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 20:38:12] 2026-02-13 01:38:12,468 | INFO     | [monitor] control thread has ended
[2026-02-12 20:38:12] 2026-02-13 01:38:12,557 [wrapper] ==== pilot stdout END ====
[2026-02-12 20:38:12] 2026-02-13 01:38:12,560 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 20:38:12] 2026-02-13 01:38:12,564 [wrapper] pilotpid: 7017
[2026-02-12 20:38:12] 2026-02-13 01:38:12,568 [wrapper] Pilot exit status: 0
[2026-02-12 20:38:12] 2026-02-13 01:38:12,582 [wrapper] pandaids: 7009662285
[2026-02-12 20:38:12] 2026-02-13 01:38:12,624 [wrapper] cleanup supervisor_pilot 29798 7018
[2026-02-12 20:38:12] 2026-02-13 01:38:12,627 [wrapper] Test setup, not cleaning
[2026-02-12 20:38:12] 2026-02-13 01:38:12,631 [wrapper] apfmon messages muted
[2026-02-12 20:38:12] 2026-02-13 01:38:12,635 [wrapper] ==== wrapper stdout END ====
[2026-02-12 20:38:12] 2026-02-13 01:38:12,639 [wrapper] ==== wrapper stderr END ====
[2026-02-12 20:38:12]  *** Error codes and diagnostics ***
[2026-02-12 20:38:12]     "exeErrorCode": 0,
[2026-02-12 20:38:12]     "exeErrorDiag": "",
[2026-02-12 20:38:12]     "pilotErrorCode": 0,
[2026-02-12 20:38:12]     "pilotErrorDiag": "",
[2026-02-12 20:38:12]  *** Listing of results directory ***
[2026-02-12 20:38:12] total 658888
[2026-02-12 20:38:12] -rw-r--r-- 1 boincer umatlas    584627 Feb 12 13:24 pilot3.tar.gz
[2026-02-12 20:38:12] -rwx------ 1 boincer umatlas     36322 Feb 12 13:25 runpilot2-wrapper.sh
[2026-02-12 20:38:12] -rw-r--r-- 1 boincer umatlas      5111 Feb 12 13:25 queuedata.json
[2026-02-12 20:38:12] -rw-r--r-- 1 boincer umatlas       100 Feb 12 19:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 20:38:12] -rwxr-xr-x 1 boincer umatlas      7986 Feb 12 19:28 run_atlas
[2026-02-12 20:38:12] -rw-r--r-- 1 boincer umatlas       105 Feb 12 19:28 job.xml
[2026-02-12 20:38:12] -rw-r--r-- 2 boincer umatlas 491020822 Feb 12 19:28 EVNT.48442096._000148.pool.root.1
[2026-02-12 20:38:12] -rw-r--r-- 2 boincer umatlas     15845 Feb 12 19:28 start_atlas.sh
[2026-02-12 20:38:12] drwxrwx--x 2 boincer umatlas      4096 Feb 12 19:28 shared
[2026-02-12 20:38:12] -rw-r--r-- 2 boincer umatlas    597953 Feb 12 19:28 input.tar.gz
[2026-02-12 20:38:12] -rw-r--r-- 1 boincer umatlas         0 Feb 12 19:28 boinc_lockfile
[2026-02-12 20:38:12] -rw-r--r-- 1 boincer umatlas      2528 Feb 12 19:28 pandaJob.out
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas        57 Feb 12 19:28 setup.sh.local
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas   1000254 Feb 12 19:28 agis_schedconf.cvmfs.json
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas   1512955 Feb 12 19:28 agis_ddmendpoints.agis.ALL.json
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas       433 Feb 12 19:28 workernode_map.json
[2026-02-12 20:38:12] drwx------ 5 boincer umatlas      4096 Feb 12 19:28 pilot3
[2026-02-12 20:38:12] -rw-r--r-- 1 boincer umatlas      5950 Feb 12 20:27 init_data.xml
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas 177780334 Feb 12 20:37 HITS.48442098._008118.pool.root.1
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas      1045 Feb 12 20:37 memory_monitor_summary.json
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas        95 Feb 12 20:37 pilot_heartbeat.json
[2026-02-12 20:38:12] -rw-r--r-- 1 boincer umatlas       530 Feb 12 20:37 boinc_task_state.xml
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas    384123 Feb 12 20:37 log.48442098._008118.job.log.tgz.1
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas      6406 Feb 12 20:37 heartbeat.json
[2026-02-12 20:38:12] -rw-r--r-- 1 boincer umatlas      8192 Feb 12 20:38 boinc_mmap_file
[2026-02-12 20:38:12] -rw-r--r-- 1 boincer umatlas        27 Feb 12 20:38 wrapper_checkpoint.txt
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas       744 Feb 12 20:38 pilotlog.txt
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas    606197 Feb 12 20:38 log.48442098._008118.job.log.1
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas       357 Feb 12 20:38 output.list
[2026-02-12 20:38:12] -rw-r--r-- 1 boincer umatlas       620 Feb 12 20:38 runtime_log
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas   1003520 Feb 12 20:38 result.tar.gz
[2026-02-12 20:38:12] -rw-r--r-- 1 boincer umatlas      9338 Feb 12 20:38 runtime_log.err
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas       658 Feb 12 20:38 0GyKDmKYqA9n9Rq4apOajLDm4fhM0noT9bVooX4SDmUnlKDmEkZjUn.diag
[2026-02-12 20:38:12] -rw-r--r-- 1 boincer umatlas     21277 Feb 12 20:38 stderr.txt
[2026-02-12 20:38:12] HITS file was successfully produced:
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas 177780334 Feb 12 20:37 shared/HITS.pool.root.1
[2026-02-12 20:38:12]  *** Contents of shared directory: ***
[2026-02-12 20:38:12] total 654712
[2026-02-12 20:38:12] -rw-r--r-- 2 boincer umatlas 491020822 Feb 12 19:28 ATLAS.root_0
[2026-02-12 20:38:12] -rw-r--r-- 2 boincer umatlas     15845 Feb 12 19:28 start_atlas.sh
[2026-02-12 20:38:12] -rw-r--r-- 2 boincer umatlas    597953 Feb 12 19:28 input.tar.gz
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas 177780334 Feb 12 20:37 HITS.pool.root.1
[2026-02-12 20:38:12] -rw------- 1 boincer umatlas   1003520 Feb 12 20:38 result.tar.gz
20:38:14 (2961): run_atlas exited; CPU time 44991.033350
20:38:14 (2961): called boinc_finish(0)

</stderr_txt>
]]>

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