Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:23:03 (27854): wrapper (7.7.26015): starting
07:23:03 (27854): wrapper: running run_atlas (--nthreads 8)
[2026-02-13 07:23:03] Arguments: --nthreads 8
[2026-02-13 07:23:03] Threads: 8
[2026-02-13 07:23:03] Checking for CVMFS
[2026-02-13 07:23:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-13 07:23:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-13 07:23:04] Running cvmfs_config stat atlas.cern.ch
[2026-02-13 07:23:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-13 07:23:06] 2.11.2.0 20801 85432 111568 156185 1 53 18294737 25165824 5233 130560 0 41438205 99.854 28311880 3386 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-13 07:23:06] CVMFS is ok
[2026-02-13 07:23:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-13 07:23:06] Checking for apptainer binary...
[2026-02-13 07:23:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-13 07:23:06] Running /usr/bin/apptainer --version
[2026-02-13 07:23:06] apptainer version 1.3.2-1.el7
[2026-02-13 07:23:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-13 07:23:27] cg-vwn472.simple-grid.lan
[2026-02-13 07:23:27] apptainer works
[2026-02-13 07:23:27] Set ATHENA_PROC_NUMBER=8
[2026-02-13 07:23:27] Set ATHENA_CORE_NUMBER=8
[2026-02-13 07:23:27] Starting ATLAS job with PandaID=7013813231
[2026-02-13 07:23:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-13 13:20:01]  *** The last 200 lines of the pilot log: ***
[2026-02-13 13:20:01] 2026-02-13 12:19:02,245 | INFO     | job 7013813231 has finished - writing final server update
[2026-02-13 13:20:01] 2026-02-13 12:19:02,245 | INFO     | total number of processed events: 400 (read)
[2026-02-13 13:20:01] 2026-02-13 12:19:02,247 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-7013813231/memory_monitor_summary.json (trf name=prmon)
[2026-02-13 13:20:01] 2026-02-13 12:19:02,248 | INFO     | extracted standard info from prmon json
[2026-02-13 13:20:01] 2026-02-13 12:19:02,248 | INFO     | extracted standard memory fields from prmon json
[2026-02-13 13:20:01] 2026-02-13 12:19:02,248 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-13 13:20:01] 2026-02-13 12:19:02,248 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-13 13:20:01] 2026-02-13 12:19:02,249 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-13 13:20:01] 2026-02-13 12:19:02,255 | INFO     | fitting pss+swap vs Time
[2026-02-13 13:20:01] 2026-02-13 12:19:02,256 | INFO     | sum of square deviations: 12295263090.0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,259 | INFO     | sum of deviations: 138697921498.00003
[2026-02-13 13:20:01] 2026-02-13 12:19:02,259 | INFO     | mean x: 1770974718.0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,260 | INFO     | mean y: 2514738.7565982407
[2026-02-13 13:20:01] 2026-02-13 12:19:02,260 | INFO     | intersect: -19975139306.880154
[2026-02-13 13:20:01] 2026-02-13 12:19:02,260 | INFO     | chi2: 6.662322387566497
[2026-02-13 13:20:01] 2026-02-13 12:19:02,261 | INFO     | sum of square deviations: 11762304260.0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,264 | INFO     | sum of deviations: 159528448670.0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,264 | INFO     | mean x: 1770974565.5
[2026-02-13 13:20:01] 2026-02-13 12:19:02,265 | INFO     | mean y: 2520620.4523809524
[2026-02-13 13:20:01] 2026-02-13 12:19:02,265 | INFO     | intersect: -24016652733.95652
[2026-02-13 13:20:01] 2026-02-13 12:19:02,265 | INFO     | chi2: 5.931790875378962
[2026-02-13 13:20:01] 2026-02-13 12:19:02,265 | INFO     | current chi2=5.931790875378962 (change=10.965118012765089 %)
[2026-02-13 13:20:01] 2026-02-13 12:19:02,265 | INFO     | right removable region: 335
[2026-02-13 13:20:01] 2026-02-13 12:19:02,266 | INFO     | sum of square deviations: 11762304260.0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,269 | INFO     | sum of deviations: 20980412193.500008
[2026-02-13 13:20:01] 2026-02-13 12:19:02,270 | INFO     | mean x: 1770974870.5
[2026-02-13 13:20:01] 2026-02-13 12:19:02,270 | INFO     | mean y: 2548399.032738095
[2026-02-13 13:20:01] 2026-02-13 12:19:02,270 | INFO     | intersect: -3156337984.6306868
[2026-02-13 13:20:01] 2026-02-13 12:19:02,270 | INFO     | chi2: 2.274533860862906
[2026-02-13 13:20:01] 2026-02-13 12:19:02,270 | INFO     | current chi2=2.274533860862906 (change=65.85974486752943 %)
[2026-02-13 13:20:01] 2026-02-13 12:19:02,271 | INFO     | sum of square deviations: 11244973630.0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,274 | INFO     | sum of deviations: -38885371588.0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,275 | INFO     | mean x: 1770975023.0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,275 | INFO     | mean y: 2565970.5528700906
[2026-02-13 13:20:01] 2026-02-13 12:19:02,275 | INFO     | intersect: 6126637409.786814
[2026-02-13 13:20:01] 2026-02-13 12:19:02,275 | INFO     | chi2: 0.9053325009846604
[2026-02-13 13:20:01] 2026-02-13 12:19:02,275 | INFO     | current chi2=0.9053325009846604 (change=60.197009305405636 %)
[2026-02-13 13:20:01] 2026-02-13 12:19:02,276 | INFO     | sum of square deviations: 10743038637.5
[2026-02-13 13:20:01] 2026-02-13 12:19:02,279 | INFO     | sum of deviations: -45610128342.0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,279 | INFO     | mean x: 1770975175.5
[2026-02-13 13:20:01] 2026-02-13 12:19:02,279 | INFO     | mean y: 2568013.26993865
[2026-02-13 13:20:01] 2026-02-13 12:19:02,280 | INFO     | intersect: 7521335074.490142
[2026-02-13 13:20:01] 2026-02-13 12:19:02,280 | INFO     | chi2: 0.8857998222355105
[2026-02-13 13:20:01] 2026-02-13 12:19:02,280 | INFO     | current chi2=0.8857998222355105 (change=2.157514363828295 %)
[2026-02-13 13:20:01] 2026-02-13 12:19:02,280 | INFO     | left removable region: 30
[2026-02-13 13:20:01] 2026-02-13 12:19:02,281 | INFO     | sum of square deviations: 8797783560.0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,283 | INFO     | sum of deviations: 5746856786.99999
[2026-02-13 13:20:01] 2026-02-13 12:19:02,284 | INFO     | mean x: 1770975450.0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,284 | INFO     | mean y: 2565313.475409836
[2026-02-13 13:20:01] 2026-02-13 12:19:02,284 | INFO     | intersect: -1154264951.2194474
[2026-02-13 13:20:01] 2026-02-13 12:19:02,284 | INFO     | chi2: 0.019622378483417042
[2026-02-13 13:20:01] 2026-02-13 12:19:02,284 | INFO     | current memory leak: 0.65 B/s (using 305 data points, chi2=0.02)
[2026-02-13 13:20:01] 2026-02-13 12:19:02,285 | INFO     | could have reported an average CPU frequency of 2249 MHz (15 samples)
[2026-02-13 13:20:01] 2026-02-13 12:19:02,285 | INFO     | ..............................
[2026-02-13 13:20:01] 2026-02-13 12:19:02,285 | INFO     | . Timing measurements:
[2026-02-13 13:20:01] 2026-02-13 12:19:02,285 | INFO     | . get job = 0 s
[2026-02-13 13:20:01] 2026-02-13 12:19:02,285 | INFO     | . initial setup = 99 s
[2026-02-13 13:20:01] 2026-02-13 12:19:02,286 | INFO     | . payload setup = 121 s
[2026-02-13 13:20:01] 2026-02-13 12:19:02,286 | INFO     | . stage-in = 0 s
[2026-02-13 13:20:01] 2026-02-13 12:19:02,286 | INFO     | . payload execution = 20901 s
[2026-02-13 13:20:01] 2026-02-13 12:19:02,286 | INFO     | . stage-out = 3 s
[2026-02-13 13:20:01] 2026-02-13 12:19:02,286 | INFO     | . log creation = 1 s
[2026-02-13 13:20:01] 2026-02-13 12:19:02,286 | INFO     | ..............................
[2026-02-13 13:20:01] 2026-02-13 12:19:02,494 | INFO     | 
[2026-02-13 13:20:01] 2026-02-13 12:19:02,494 | INFO     | job summary report
[2026-02-13 13:20:01] 2026-02-13 12:19:02,494 | INFO     | --------------------------------------------------
[2026-02-13 13:20:01] 2026-02-13 12:19:02,494 | INFO     | PanDA job id: 7013813231
[2026-02-13 13:20:01] 2026-02-13 12:19:02,494 | INFO     | task id: 48431096
[2026-02-13 13:20:01] 2026-02-13 12:19:02,494 | INFO     | errors: (none)
[2026-02-13 13:20:01] 2026-02-13 12:19:02,494 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-13 13:20:01] 2026-02-13 12:19:02,495 | INFO     | pilot state: finished 
[2026-02-13 13:20:01] 2026-02-13 12:19:02,495 | INFO     | transexitcode: 0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,495 | INFO     | exeerrorcode: 0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,495 | INFO     | exeerrordiag: 
[2026-02-13 13:20:01] 2026-02-13 12:19:02,495 | INFO     | exitcode: 0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,495 | INFO     | exitmsg: OK
[2026-02-13 13:20:01] 2026-02-13 12:19:02,495 | INFO     | cpuconsumptiontime: 80306 s
[2026-02-13 13:20:01] 2026-02-13 12:19:02,495 | INFO     | nevents: 400
[2026-02-13 13:20:01] 2026-02-13 12:19:02,495 | INFO     | neventsw: 0
[2026-02-13 13:20:01] 2026-02-13 12:19:02,495 | INFO     | pid: 4005
[2026-02-13 13:20:01] 2026-02-13 12:19:02,495 | INFO     | pgrp: 4005
[2026-02-13 13:20:01] 2026-02-13 12:19:02,496 | INFO     | corecount: 8
[2026-02-13 13:20:01] 2026-02-13 12:19:02,496 | INFO     | event service: False
[2026-02-13 13:20:01] 2026-02-13 12:19:02,496 | INFO     | sizes: {0: 2281125, 1: 2281810, 2: 2282271, 12: 2282271, 21028: 2315791, 21031: 2324789, 21033: 2325001, 21034: 2325195}
[2026-02-13 13:20:01] 2026-02-13 12:19:02,496 | INFO     | --------------------------------------------------
[2026-02-13 13:20:01] 2026-02-13 12:19:02,496 | INFO     | 
[2026-02-13 13:20:01] 2026-02-13 12:19:02,496 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-02-13 13:20:01] 2026-02-13 12:19:02,663 | INFO     | time since job start (21046s) is within the limit (349056.0s)
[2026-02-13 13:20:01] 2026-02-13 12:19:03,106 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,106 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,106 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,106 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,106 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,106 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,107 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,107 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,107 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,107 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,108 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,108 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-13 13:20:01] 2026-02-13 12:19:03,108 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,108 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-13 13:20:01] 2026-02-13 12:19:03,108 | INFO     | job 7013813231 has completed (purged errors)
[2026-02-13 13:20:01] 2026-02-13 12:19:03,108 | INFO     | overall cleanup function is called
[2026-02-13 13:20:01] 2026-02-13 12:19:04,117 | INFO     | --- collectZombieJob: --- 10, [4005]
[2026-02-13 13:20:01] 2026-02-13 12:19:04,117 | INFO     | zombie collector waiting for pid 4005
[2026-02-13 13:20:01] 2026-02-13 12:19:04,118 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-13 13:20:01] 2026-02-13 12:19:04,118 | INFO     | collected zombie processes
[2026-02-13 13:20:01] 2026-02-13 12:19:04,118 | INFO     | will attempt to kill all subprocesses of pid=4005
[2026-02-13 13:20:01] 2026-02-13 12:19:04,231 | INFO     | process IDs to be killed: [4005] (in reverse order)
[2026-02-13 13:20:01] 2026-02-13 12:19:04,847 | WARNING  | found no corresponding commands to process id(s)
[2026-02-13 13:20:01] 2026-02-13 12:19:04,847 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-13 13:20:01] 2026-02-13 12:19:04,850 | INFO     | did not find any defunct processes belonging to 4005
[2026-02-13 13:20:01] 2026-02-13 12:19:04,852 | INFO     | did not find any defunct processes belonging to 4005
[2026-02-13 13:20:01] 2026-02-13 12:19:04,852 | INFO     | ready for new job
[2026-02-13 13:20:01] 2026-02-13 12:19:04,852 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-13 13:20:01] 2026-02-13 12:19:04,857 | INFO     | **************************************
[2026-02-13 13:20:01] 2026-02-13 12:19:04,858 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-13 13:20:01] 2026-02-13 12:19:04,858 | INFO     | **************************************
[2026-02-13 13:20:01] 2026-02-13 12:19:04,858 | INFO     | 
[2026-02-13 13:20:01] 2026-02-13 12:19:04,858 | INFO     | pilot is running in a VM
[2026-02-13 13:20:01] 2026-02-13 12:19:04,859 | INFO     | architecture information:
[2026-02-13 13:20:01] 2026-02-13 12:19:04,870 | INFO     | executing command: cat /etc/os-release
[2026-02-13 13:20:01] 2026-02-13 12:19:05,122 | INFO     | cat /etc/os-release:
[2026-02-13 13:20:01] NAME="CentOS Linux"
[2026-02-13 13:20:01] VERSION="7 (Core)"
[2026-02-13 13:20:01] ID="centos"
[2026-02-13 13:20:01] ID_LIKE="rhel fedora"
[2026-02-13 13:20:01] VERSION_ID="7"
[2026-02-13 13:20:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-13 13:20:01] ANSI_COLOR="0;31"
[2026-02-13 13:20:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-13 13:20:01] HOME_URL="https://www.centos.org/"
[2026-02-13 13:20:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-13 13:20:01] 
[2026-02-13 13:20:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-13 13:20:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-13 13:20:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-13 13:20:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-13 13:20:01] 
[2026-02-13 13:20:01] 2026-02-13 12:19:05,122 | INFO     | **************************************
[2026-02-13 13:20:01] 2026-02-13 12:19:05,625 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-02-13 13:20:01] 2026-02-13 12:19:05,862 | INFO     | sufficient remaining disk space (495234056192 B)
[2026-02-13 13:20:01] 2026-02-13 12:19:05,862 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-13 13:20:01] 2026-02-13 12:19:05,863 | INFO     | current server update state: UPDATING_FINAL
[2026-02-13 13:20:01] 2026-02-13 12:19:05,863 | INFO     | update_server=False
[2026-02-13 13:20:01] 2026-02-13 12:19:05,863 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-13 13:20:01] 2026-02-13 12:19:05,863 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-13 13:20:01] 2026-02-13 12:19:05,863 | INFO     | aborting loop
[2026-02-13 13:20:01] 2026-02-13 12:19:05,864 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-13 13:20:01] 2026-02-13 12:19:06,473 | INFO     | all data control threads have been joined
[2026-02-13 13:20:01] 2026-02-13 12:19:06,626 | INFO     | all job control threads have been joined
[2026-02-13 13:20:01] 2026-02-13 12:19:06,869 | INFO     | [job] retrieve thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:06,872 | INFO     | [job] job monitor thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:06,933 | INFO     | all payload control threads have been joined
[2026-02-13 13:20:01] 2026-02-13 12:19:07,053 | INFO     | [payload] validate_post thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:07,130 | INFO     | [payload] validate_pre thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:07,211 | INFO     | [payload] failed_post thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:07,311 | INFO     | [data] copytool_in thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:07,479 | INFO     | [data] control thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:07,509 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-13 13:20:01] 2026-02-13 12:19:07,632 | INFO     | [job] control thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:07,732 | INFO     | [payload] execute_payloads thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:07,870 | INFO     | [data] copytool_out thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:07,914 | INFO     | [job] validate thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:07,939 | INFO     | [payload] control thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:07,990 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-13 13:20:01] 2026-02-13 12:19:08,086 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:08,116 | INFO     | [job] create_data_payload thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:08,515 | INFO     | [job] queue monitor thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:11,999 | INFO     | [data] queue_monitor thread has finished
[2026-02-13 13:20:01] 2026-02-13 12:19:35,877 | INFO     | PID=31903 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-13 13:20:01] 2026-02-13 12:19:35,877 | INFO     | .. there are 9 such processes running
[2026-02-13 13:20:01] 2026-02-13 12:19:35,878 | INFO     | found 0 job(s) in 20 queues
[2026-02-13 13:20:01] 2026-02-13 12:19:35,878 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-13 13:20:01] 2026-02-13 12:19:35,878 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-13 13:20:01] 2026-02-13 12:19:52,356 | INFO     | [monitor] cgroup control has ended
[2026-02-13 13:20:01] 2026-02-13 12:19:52,414 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140026892609344)>', '<ExcThread(monitor, started 140026285364992)>']
[2026-02-13 13:20:01] 2026-02-13 12:19:52,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-13 13:20:01] 2026-02-13 12:19:52,978 | INFO     | [monitor] control thread has ended
[2026-02-13 13:20:01] 2026-02-13 12:19:57,440 | INFO     | all workflow threads have been joined
[2026-02-13 13:20:01] 2026-02-13 12:19:57,440 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-13 13:20:01] 2026-02-13 12:19:57,441 | INFO     | traces error code: 0
[2026-02-13 13:20:01] 2026-02-13 12:19:57,441 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-13 13:20:01] 2026-02-13 12:19:57,837 [wrapper] ==== pilot stdout END ====
[2026-02-13 13:20:01] 2026-02-13 12:19:57,918 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-13 13:20:01] 2026-02-13 12:19:58,021 [wrapper] pilotpid: 31903
[2026-02-13 13:20:01] 2026-02-13 12:19:58,104 [wrapper] Pilot exit status: 0
[2026-02-13 13:20:01] 2026-02-13 12:19:58,576 [wrapper] pandaids: 7013813231
[2026-02-13 13:20:01] 2026-02-13 12:19:59,658 [wrapper] cleanup supervisor_pilot 29222 31904
[2026-02-13 13:20:01] 2026-02-13 12:19:59,714 [wrapper] Test setup, not cleaning
[2026-02-13 13:20:01] 2026-02-13 12:19:59,751 [wrapper] apfmon messages muted
[2026-02-13 13:20:01] 2026-02-13 12:19:59,820 [wrapper] ==== wrapper stdout END ====
[2026-02-13 13:20:01] 2026-02-13 12:19:59,902 [wrapper] ==== wrapper stderr END ====
[2026-02-13 13:20:01]  *** Error codes and diagnostics ***
[2026-02-13 13:20:01]     "exeErrorCode": 0,
[2026-02-13 13:20:01]     "exeErrorDiag": "",
[2026-02-13 13:20:01]     "pilotErrorCode": 0,
[2026-02-13 13:20:01]     "pilotErrorDiag": "",
[2026-02-13 13:20:01]  *** Listing of results directory ***
[2026-02-13 13:20:01] total 943356
[2026-02-13 13:20:01] -rw-r--r--. 1 boinc boinc    584627 Feb 12 15:30 pilot3.tar.gz
[2026-02-13 13:20:01] -rwx------. 1 boinc boinc     36322 Feb 12 15:34 runpilot2-wrapper.sh
[2026-02-13 13:20:01] -rw-r--r--. 1 boinc boinc      5111 Feb 12 15:36 queuedata.json
[2026-02-13 13:20:01] -rw-r--r--. 1 boinc boinc       100 Feb 13 07:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-13 13:20:01] -rwxr-xr-x. 1 boinc boinc      7986 Feb 13 07:23 run_atlas
[2026-02-13 13:20:01] -rw-r--r--. 1 boinc boinc       105 Feb 13 07:23 job.xml
[2026-02-13 13:20:01] -rw-r--r--. 2 boinc boinc 673870483 Feb 13 07:23 EVNT.48431094._000256.pool.root.1
[2026-02-13 13:20:01] -rw-r--r--. 2 boinc boinc     15845 Feb 13 07:23 start_atlas.sh
[2026-02-13 13:20:01] drwxrwx--x. 2 boinc boinc        68 Feb 13 07:23 shared
[2026-02-13 13:20:01] -rw-r--r--. 2 boinc boinc    597961 Feb 13 07:23 input.tar.gz
[2026-02-13 13:20:01] -rw-r--r--. 1 boinc boinc      6391 Feb 13 07:23 init_data.xml
[2026-02-13 13:20:01] -rw-r--r--. 1 boinc boinc         0 Feb 13 07:23 boinc_lockfile
[2026-02-13 13:20:01] -rw-r--r--. 1 boinc boinc      2556 Feb 13 07:23 pandaJob.out
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc       415 Feb 13 07:28 workernode_map.json
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc   1000262 Feb 13 07:28 agis_schedconf.cvmfs.json
[2026-02-13 13:20:01] drwx------. 5 boinc boinc      4096 Feb 13 07:28 pilot3
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc 281172500 Feb 13 13:17 HITS.48431096._039546.pool.root.1
[2026-02-13 13:20:01] -rw-r--r--. 1 boinc boinc       531 Feb 13 13:17 boinc_task_state.xml
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc        95 Feb 13 13:18 pilot_heartbeat.json
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc      1019 Feb 13 13:18 memory_monitor_summary.json
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc   1512955 Feb 13 13:18 agis_ddmendpoints.agis.ALL.json
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc    598295 Feb 13 13:18 log.48431096._039546.job.log.tgz.1
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc      6324 Feb 13 13:19 heartbeat.json
[2026-02-13 13:20:01] -rw-r--r--. 1 boinc boinc        28 Feb 13 13:19 wrapper_checkpoint.txt
[2026-02-13 13:20:01] -rw-r--r--. 1 boinc boinc      8192 Feb 13 13:19 boinc_mmap_file
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc      4880 Feb 13 13:19 pilotlog.txt
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc   2917765 Feb 13 13:19 log.48431096._039546.job.log.1
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc       357 Feb 13 13:20 output.list
[2026-02-13 13:20:01] -rw-r--r--. 1 boinc boinc       620 Feb 13 13:20 runtime_log
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc   3532800 Feb 13 13:20 result.tar.gz
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc       656 Feb 13 13:20 xgGLDmvwmA9n9Rq4apOajLDm4fhM0noT9bVooX4SDmISlKDmBFBxom.diag
[2026-02-13 13:20:01] -rw-r--r--. 1 boinc boinc      8816 Feb 13 13:20 runtime_log.err
[2026-02-13 13:20:01] -rw-r--r--. 1 boinc boinc     20723 Feb 13 13:20 stderr.txt
[2026-02-13 13:20:01] HITS file was successfully produced:
[2026-02-13 13:20:01] -rw-------. 1 boinc boinc 281172500 Feb 13 13:17 shared/HITS.pool.root.1
[2026-02-13 13:20:01]  *** Contents of shared directory: ***
[2026-02-13 13:20:02] total 936716
[2026-02-13 13:20:02] -rw-r--r--. 2 boinc boinc 673870483 Feb 13 07:23 ATLAS.root_0
[2026-02-13 13:20:02] -rw-r--r--. 2 boinc boinc     15845 Feb 13 07:23 start_atlas.sh
[2026-02-13 13:20:02] -rw-r--r--. 2 boinc boinc    597961 Feb 13 07:23 input.tar.gz
[2026-02-13 13:20:02] -rw-------. 1 boinc boinc 281172500 Feb 13 13:17 HITS.pool.root.1
[2026-02-13 13:20:02] -rw-------. 1 boinc boinc   3532800 Feb 13 13:20 result.tar.gz
13:20:03 (27854): run_atlas exited; CPU time 80605.168913
13:20:03 (27854): called boinc_finish(0)

</stderr_txt>
]]>

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