Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:52:35 (354285): wrapper (7.7.26015): starting
07:52:35 (354285): wrapper: running run_atlas (--nthreads 3)
[2026-02-13 07:52:35] Arguments: --nthreads 3
[2026-02-13 07:52:35] Threads: 3
[2026-02-13 07:52:35] Checking for CVMFS
[2026-02-13 07:52:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-13 07:52:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-13 07:52:36] Running cvmfs_config stat atlas.cern.ch
[2026-02-13 07:52:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-13 07:52:36] 2.9.2.0 3147370 10233 88536 156185 3 50 20209410 36864000 0 130560 0 4025508 99.983 357122 5394 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-13 07:52:36] CVMFS is ok
[2026-02-13 07:52:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-13 07:52:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-13 07:52:36] Further information can be found at the LHC@home message board.
[2026-02-13 07:52:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-13 07:52:36] Checking for apptainer binary...
[2026-02-13 07:52:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-13 07:52:36] Running /usr/bin/apptainer --version
[2026-02-13 07:52:36] apptainer version 1.4.1-1.1
[2026-02-13 07:52:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-13 07:52:36] magicA250a
[2026-02-13 07:52:36] apptainer works
[2026-02-13 07:52:36] Set ATHENA_PROC_NUMBER=3
[2026-02-13 07:52:36] Set ATHENA_CORE_NUMBER=3
[2026-02-13 07:52:36] Starting ATLAS job with PandaID=7013403659
[2026-02-13 07:52:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-13 09:58:00]  *** The last 200 lines of the pilot log: ***
[2026-02-13 09:58:00] 2026-02-13 08:57:01,843 | INFO     | job 7013403659 has completed (purged errors)
[2026-02-13 09:58:00] 2026-02-13 08:57:01,843 | INFO     | overall cleanup function is called
[2026-02-13 09:58:00] 2026-02-13 08:57:02,849 | INFO     | --- collectZombieJob: --- 10, [362742]
[2026-02-13 09:58:00] 2026-02-13 08:57:02,849 | INFO     | zombie collector waiting for pid 362742
[2026-02-13 09:58:00] 2026-02-13 08:57:02,849 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-13 09:58:00] 2026-02-13 08:57:02,849 | INFO     | collected zombie processes
[2026-02-13 09:58:00] 2026-02-13 08:57:02,849 | INFO     | will attempt to kill all subprocesses of pid=362742
[2026-02-13 09:58:00] 2026-02-13 08:57:02,891 | INFO     | process IDs to be killed: [362742] (in reverse order)
[2026-02-13 09:58:00] 2026-02-13 08:57:02,914 | WARNING  | found no corresponding commands to process id(s)
[2026-02-13 09:58:00] 2026-02-13 08:57:02,914 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-13 09:58:00] 2026-02-13 08:57:02,916 | INFO     | did not find any defunct processes belonging to 362742
[2026-02-13 09:58:00] 2026-02-13 08:57:02,917 | INFO     | did not find any defunct processes belonging to 362742
[2026-02-13 09:58:00] 2026-02-13 08:57:02,917 | INFO     | ready for new job
[2026-02-13 09:58:00] 2026-02-13 08:57:02,917 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-13 09:58:00] 2026-02-13 08:57:02,918 | INFO     | **************************************
[2026-02-13 09:58:00] 2026-02-13 08:57:02,918 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-13 09:58:00] 2026-02-13 08:57:02,918 | INFO     | **************************************
[2026-02-13 09:58:00] 2026-02-13 08:57:02,918 | INFO     | 
[2026-02-13 09:58:00] 2026-02-13 08:57:02,918 | INFO     | architecture information:
[2026-02-13 09:58:00] 2026-02-13 08:57:02,918 | INFO     | executing command: cat /etc/os-release
[2026-02-13 09:58:00] 2026-02-13 08:57:02,927 | INFO     | cat /etc/os-release:
[2026-02-13 09:58:00] NAME="CentOS Linux"
[2026-02-13 09:58:00] VERSION="7 (Core)"
[2026-02-13 09:58:00] ID="centos"
[2026-02-13 09:58:00] ID_LIKE="rhel fedora"
[2026-02-13 09:58:00] VERSION_ID="7"
[2026-02-13 09:58:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-13 09:58:00] ANSI_COLOR="0;31"
[2026-02-13 09:58:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-13 09:58:00] HOME_URL="https://www.centos.org/"
[2026-02-13 09:58:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-13 09:58:00] 
[2026-02-13 09:58:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-13 09:58:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-13 09:58:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-13 09:58:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-13 09:58:00] 
[2026-02-13 09:58:00] 2026-02-13 08:57:02,927 | INFO     | **************************************
[2026-02-13 09:58:00] 2026-02-13 08:57:03,430 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-13 09:58:00] 2026-02-13 08:57:03,441 | INFO     | sufficient remaining disk space (333028786176 B)
[2026-02-13 09:58:00] 2026-02-13 08:57:03,441 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-13 09:58:00] 2026-02-13 08:57:03,441 | INFO     | current server update state: UPDATING_FINAL
[2026-02-13 09:58:00] 2026-02-13 08:57:03,441 | INFO     | update_server=False
[2026-02-13 09:58:00] 2026-02-13 08:57:03,441 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-13 09:58:00] 2026-02-13 08:57:03,441 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-13 09:58:00] 2026-02-13 08:57:03,442 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-13 09:58:00] 2026-02-13 08:57:03,587 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-13 09:58:00] 2026-02-13 08:57:03,588 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-13 09:58:00] 2026-02-13 08:57:03,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-13 09:58:00] 2026-02-13 08:57:03,588 | INFO     | will abort loop
[2026-02-13 09:58:00] 2026-02-13 08:57:03,735 | INFO     | all job control threads have been joined
[2026-02-13 09:58:00] 2026-02-13 08:57:04,043 | INFO     | all data control threads have been joined
[2026-02-13 09:58:00] 2026-02-13 08:57:04,308 | INFO     | all payload control threads have been joined
[2026-02-13 09:58:00] 2026-02-13 08:57:04,446 | INFO     | [job] retrieve thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:04,447 | INFO     | [job] queue monitor thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:04,486 | INFO     | [payload] validate_pre thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:04,525 | INFO     | [payload] execute_payloads thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:04,593 | INFO     | [job] job monitor thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:04,602 | INFO     | [data] copytool_in thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:04,741 | INFO     | [job] control thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:04,785 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:04,852 | INFO     | [payload] validate_post thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:05,049 | INFO     | [data] control thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:05,313 | INFO     | [payload] control thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:05,448 | INFO     | [data] copytool_out thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:05,527 | INFO     | [job] create_data_payload thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:05,671 | INFO     | [payload] failed_post thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:05,858 | INFO     | [job] validate thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:06,155 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-13 09:58:00] 2026-02-13 08:57:10,162 | INFO     | [data] queue_monitor thread has finished
[2026-02-13 09:58:00] 2026-02-13 08:57:33,971 | INFO     | PID=358319 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-13 09:58:00] 2026-02-13 08:57:33,971 | INFO     | found 0 job(s) in 20 queues
[2026-02-13 09:58:00] 2026-02-13 08:57:33,971 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-13 09:58:00] 2026-02-13 08:57:33,971 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-13 09:58:00] 2026-02-13 08:57:53,916 | INFO     | [monitor] cgroup control has ended
[2026-02-13 09:58:00] 2026-02-13 08:57:54,922 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140557700269888)>', '<ExcThread(monitor, started 140556697073408)>']
[2026-02-13 09:58:00] 2026-02-13 08:57:55,070 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-13 09:58:00] 2026-02-13 08:57:55,071 | INFO     | [monitor] control thread has ended
[2026-02-13 09:58:00] 2026-02-13 08:57:59,924 | INFO     | all workflow threads have been joined
[2026-02-13 09:58:00] 2026-02-13 08:57:59,924 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-13 09:58:00] 2026-02-13 08:57:59,924 | INFO     | traces error code: 0
[2026-02-13 09:58:00] 2026-02-13 08:57:59,924 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-13 09:58:00] 2026-02-13 08:57:59,972 [wrapper] ==== pilot stdout END ====
[2026-02-13 09:58:00] 2026-02-13 08:57:59,975 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-13 09:58:00] 2026-02-13 08:57:59,977 [wrapper] pilotpid: 358319
[2026-02-13 09:58:00] 2026-02-13 08:57:59,979 [wrapper] Pilot exit status: 0
[2026-02-13 09:58:00] 2026-02-13 08:57:59,986 [wrapper] pandaids: 7013403659
[2026-02-13 09:58:00] 2026-02-13 08:58:00,003 [wrapper] cleanup supervisor_pilot  368096 358320
[2026-02-13 09:58:00] 2026-02-13 08:58:00,005 [wrapper] Test setup, not cleaning
[2026-02-13 09:58:00] 2026-02-13 08:58:00,007 [wrapper] apfmon messages muted
[2026-02-13 09:58:00] 2026-02-13 08:58:00,009 [wrapper] ==== wrapper stdout END ====
[2026-02-13 09:58:00] 2026-02-13 08:58:00,011 [wrapper] ==== wrapper stderr END ====
[2026-02-13 09:58:00]  *** Error codes and diagnostics ***
[2026-02-13 09:58:00]     "exeErrorCode": 0,
[2026-02-13 09:58:00]     "exeErrorDiag": "",
[2026-02-13 09:58:00]     "pilotErrorCode": 0,
[2026-02-13 09:58:00]     "pilotErrorDiag": "",
[2026-02-13 09:58:00]  *** Listing of results directory ***
[2026-02-13 09:58:00] total 951932
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc    584627 Feb 12 08:21 pilot3.tar.gz
[2026-02-13 09:58:00] -rwx------ 1 boinc boinc     36322 Feb 12 08:23 runpilot2-wrapper.sh
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc      5111 Feb 12 08:23 queuedata.json
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc       100 Feb 13 07:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-13 09:58:00] -rwxr-xr-x 1 boinc boinc      7986 Feb 13 07:52 run_atlas
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc       105 Feb 13 07:52 job.xml
[2026-02-13 09:58:00] -rw-r--r-- 2 boinc boinc 682433170 Feb 13 07:52 EVNT.48431094._000209.pool.root.1
[2026-02-13 09:58:00] -rw-r--r-- 2 boinc boinc    597947 Feb 13 07:52 input.tar.gz
[2026-02-13 09:58:00] -rw-r--r-- 2 boinc boinc     15845 Feb 13 07:52 start_atlas.sh
[2026-02-13 09:58:00] drwxrwx--x 2 boinc boinc      4096 Feb 13 07:52 shared
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc         0 Feb 13 07:52 boinc_setup_complete
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc      6442 Feb 13 07:52 init_data.xml
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc         0 Feb 13 07:52 boinc_lockfile
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc      2555 Feb 13 07:52 pandaJob.out
[2026-02-13 09:58:00] -rw------- 1 boinc boinc   1000262 Feb 13 07:52 agis_schedconf.cvmfs.json
[2026-02-13 09:58:00] -rw------- 1 boinc boinc   1512955 Feb 13 07:52 agis_ddmendpoints.agis.ALL.json
[2026-02-13 09:58:00] -rw------- 1 boinc boinc       430 Feb 13 07:52 workernode_map.json
[2026-02-13 09:58:00] drwx------ 5 boinc boinc      4096 Feb 13 07:52 pilot3
[2026-02-13 09:58:00] -rw------- 1 boinc boinc 285718086 Feb 13 09:56 HITS.48431096._037236.pool.root.1
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc       530 Feb 13 09:56 boinc_task_state.xml
[2026-02-13 09:58:00] -rw------- 1 boinc boinc      1020 Feb 13 09:56 memory_monitor_summary.json
[2026-02-13 09:58:00] -rw------- 1 boinc boinc    282119 Feb 13 09:56 log.48431096._037236.job.log.tgz.1
[2026-02-13 09:58:00] -rw------- 1 boinc boinc      6317 Feb 13 09:57 heartbeat.json
[2026-02-13 09:58:00] -rw------- 1 boinc boinc        95 Feb 13 09:57 pilot_heartbeat.json
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc      8192 Feb 13 09:57 boinc_mmap_file
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc        27 Feb 13 09:57 wrapper_checkpoint.txt
[2026-02-13 09:58:00] -rw------- 1 boinc boinc      4933 Feb 13 09:57 pilotlog.txt
[2026-02-13 09:58:00] -rw------- 1 boinc boinc   1072899 Feb 13 09:58 log.48431096._037236.job.log.1
[2026-02-13 09:58:00] -rw------- 1 boinc boinc       357 Feb 13 09:58 output.list
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc       620 Feb 13 09:58 runtime_log
[2026-02-13 09:58:00] -rw------- 1 boinc boinc   1372160 Feb 13 09:58 result.tar.gz
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc      8916 Feb 13 09:58 runtime_log.err
[2026-02-13 09:58:00] -rw------- 1 boinc boinc       661 Feb 13 09:58 2c8KDmAEgA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmPqlKDmlWMpun.diag
[2026-02-13 09:58:00] -rw-r--r-- 1 boinc boinc     11033 Feb 13 09:58 stderr.txt
[2026-02-13 09:58:00] HITS file was successfully produced:
[2026-02-13 09:58:00] -rw------- 1 boinc boinc 285718086 Feb 13 09:56 shared/HITS.pool.root.1
[2026-02-13 09:58:00]  *** Contents of shared directory: ***
[2026-02-13 09:58:00] total 947412
[2026-02-13 09:58:00] -rw-r--r-- 2 boinc boinc 682433170 Feb 13 07:52 ATLAS.root_0
[2026-02-13 09:58:00] -rw-r--r-- 2 boinc boinc    597947 Feb 13 07:52 input.tar.gz
[2026-02-13 09:58:00] -rw-r--r-- 2 boinc boinc     15845 Feb 13 07:52 start_atlas.sh
[2026-02-13 09:58:00] -rw------- 1 boinc boinc 285718086 Feb 13 09:56 HITS.pool.root.1
[2026-02-13 09:58:00] -rw------- 1 boinc boinc   1372160 Feb 13 09:58 result.tar.gz
09:58:01 (354285): run_atlas exited; CPU time 21630.565102
09:58:01 (354285): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN