Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:21:26 (702733): wrapper (7.7.26015): starting
08:21:26 (702733): wrapper: running run_atlas (--nthreads 4)
[2026-02-13 08:21:26] Arguments: --nthreads 4
[2026-02-13 08:21:26] Threads: 4
[2026-02-13 08:21:26] Checking for CVMFS
[2026-02-13 08:21:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-13 08:21:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-13 08:21:26] Running cvmfs_config stat atlas.cern.ch
[2026-02-13 08:21:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-13 08:21:26] 2.9.2.0 3088581 10011 95948 156187 4 49 18853210 36864000 0 130560 0 5181046 99.987 347930 7172 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-13 08:21:26] CVMFS is ok
[2026-02-13 08:21:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-13 08:21:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-13 08:21:26] Further information can be found at the LHC@home message board.
[2026-02-13 08:21:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-13 08:21:26] Checking for apptainer binary...
[2026-02-13 08:21:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-13 08:21:26] Running /usr/bin/apptainer --version
[2026-02-13 08:21:26] apptainer version 1.4.1-1.1
[2026-02-13 08:21:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-13 08:21:26] thA315b
[2026-02-13 08:21:26] apptainer works
[2026-02-13 08:21:26] Set ATHENA_PROC_NUMBER=4
[2026-02-13 08:21:26] Set ATHENA_CORE_NUMBER=4
[2026-02-13 08:21:26] Starting ATLAS job with PandaID=7014038430
[2026-02-13 08:21:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-13 09:52:48]  *** The last 200 lines of the pilot log: ***
[2026-02-13 09:52:49] 2026-02-13 08:51:47,296 | INFO     | job 7014038430 has completed (purged errors)
[2026-02-13 09:52:49] 2026-02-13 08:51:47,296 | INFO     | overall cleanup function is called
[2026-02-13 09:52:49] 2026-02-13 08:51:48,303 | INFO     | --- collectZombieJob: --- 10, [711325]
[2026-02-13 09:52:49] 2026-02-13 08:51:48,303 | INFO     | zombie collector waiting for pid 711325
[2026-02-13 09:52:49] 2026-02-13 08:51:48,303 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-13 09:52:49] 2026-02-13 08:51:48,303 | INFO     | collected zombie processes
[2026-02-13 09:52:49] 2026-02-13 08:51:48,303 | INFO     | will attempt to kill all subprocesses of pid=711325
[2026-02-13 09:52:49] 2026-02-13 08:51:48,347 | INFO     | process IDs to be killed: [711325] (in reverse order)
[2026-02-13 09:52:49] 2026-02-13 08:51:48,375 | WARNING  | found no corresponding commands to process id(s)
[2026-02-13 09:52:49] 2026-02-13 08:51:48,375 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-13 09:52:49] 2026-02-13 08:51:48,376 | INFO     | did not find any defunct processes belonging to 711325
[2026-02-13 09:52:49] 2026-02-13 08:51:48,377 | INFO     | did not find any defunct processes belonging to 711325
[2026-02-13 09:52:49] 2026-02-13 08:51:48,377 | INFO     | ready for new job
[2026-02-13 09:52:49] 2026-02-13 08:51:48,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-13 09:52:49] 2026-02-13 08:51:48,378 | INFO     | **************************************
[2026-02-13 09:52:49] 2026-02-13 08:51:48,378 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-13 09:52:49] 2026-02-13 08:51:48,378 | INFO     | **************************************
[2026-02-13 09:52:49] 2026-02-13 08:51:48,378 | INFO     | 
[2026-02-13 09:52:49] 2026-02-13 08:51:48,379 | INFO     | architecture information:
[2026-02-13 09:52:49] 2026-02-13 08:51:48,379 | INFO     | executing command: cat /etc/os-release
[2026-02-13 09:52:49] 2026-02-13 08:51:48,388 | INFO     | cat /etc/os-release:
[2026-02-13 09:52:49] NAME="CentOS Linux"
[2026-02-13 09:52:49] VERSION="7 (Core)"
[2026-02-13 09:52:49] ID="centos"
[2026-02-13 09:52:49] ID_LIKE="rhel fedora"
[2026-02-13 09:52:49] VERSION_ID="7"
[2026-02-13 09:52:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-13 09:52:49] ANSI_COLOR="0;31"
[2026-02-13 09:52:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-13 09:52:49] HOME_URL="https://www.centos.org/"
[2026-02-13 09:52:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-13 09:52:49] 
[2026-02-13 09:52:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-13 09:52:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-13 09:52:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-13 09:52:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-13 09:52:49] 
[2026-02-13 09:52:49] 2026-02-13 08:51:48,389 | INFO     | **************************************
[2026-02-13 09:52:49] 2026-02-13 08:51:48,892 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-13 09:52:49] 2026-02-13 08:51:48,905 | INFO     | sufficient remaining disk space (334901542912 B)
[2026-02-13 09:52:49] 2026-02-13 08:51:48,905 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-13 09:52:49] 2026-02-13 08:51:48,906 | INFO     | current server update state: UPDATING_FINAL
[2026-02-13 09:52:49] 2026-02-13 08:51:48,906 | INFO     | update_server=False
[2026-02-13 09:52:49] 2026-02-13 08:51:48,906 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-13 09:52:49] 2026-02-13 08:51:48,906 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-13 09:52:49] 2026-02-13 08:51:48,906 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-13 09:52:49] 2026-02-13 08:51:48,921 | INFO     | all data control threads have been joined
[2026-02-13 09:52:49] 2026-02-13 08:51:48,922 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-13 09:52:49] 2026-02-13 08:51:48,922 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-13 09:52:49] 2026-02-13 08:51:48,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-13 09:52:49] 2026-02-13 08:51:48,922 | INFO     | will abort loop
[2026-02-13 09:52:49] 2026-02-13 08:51:49,002 | INFO     | all payload control threads have been joined
[2026-02-13 09:52:49] 2026-02-13 08:51:49,722 | INFO     | all job control threads have been joined
[2026-02-13 09:52:49] 2026-02-13 08:51:49,911 | INFO     | [job] retrieve thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:49,912 | INFO     | [job] queue monitor thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:49,916 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-13 09:52:49] 2026-02-13 08:51:49,927 | INFO     | [data] control thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:49,927 | INFO     | [job] job monitor thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:50,008 | INFO     | [payload] control thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:50,642 | INFO     | [payload] execute_payloads thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:50,669 | INFO     | [job] validate thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:50,728 | INFO     | [job] control thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:50,776 | INFO     | [job] create_data_payload thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:50,816 | INFO     | [payload] validate_pre thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:50,944 | INFO     | [data] copytool_in thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:51,053 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:51,072 | INFO     | [payload] validate_post thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:51,505 | INFO     | [payload] failed_post thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:51,922 | INFO     | [data] copytool_out thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:51:52,913 | INFO     | [data] queue_monitor thread has finished
[2026-02-13 09:52:49] 2026-02-13 08:52:19,283 | INFO     | PID=706831 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-13 09:52:49] 2026-02-13 08:52:19,283 | INFO     | found 0 job(s) in 20 queues
[2026-02-13 09:52:49] 2026-02-13 08:52:19,284 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-13 09:52:49] 2026-02-13 08:52:19,284 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-13 09:52:49] 2026-02-13 08:52:42,539 | INFO     | [monitor] cgroup control has ended
[2026-02-13 09:52:49] 2026-02-13 08:52:43,853 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862097622848)>', '<ExcThread(monitor, started 139861734430464)>']
[2026-02-13 09:52:49] 2026-02-13 08:52:44,419 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-13 09:52:49] 2026-02-13 08:52:44,419 | INFO     | [monitor] control thread has ended
[2026-02-13 09:52:49] 2026-02-13 08:52:48,861 | INFO     | all workflow threads have been joined
[2026-02-13 09:52:49] 2026-02-13 08:52:48,861 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-13 09:52:49] 2026-02-13 08:52:48,861 | INFO     | traces error code: 0
[2026-02-13 09:52:49] 2026-02-13 08:52:48,862 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-13 09:52:49] 2026-02-13 08:52:48,917 [wrapper] ==== pilot stdout END ====
[2026-02-13 09:52:49] 2026-02-13 08:52:48,919 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-13 09:52:49] 2026-02-13 08:52:48,922 [wrapper] pilotpid: 706831
[2026-02-13 09:52:49] 2026-02-13 08:52:48,924 [wrapper] Pilot exit status: 0
[2026-02-13 09:52:49] 2026-02-13 08:52:48,932 [wrapper] pandaids: 7014038430
[2026-02-13 09:52:49] 2026-02-13 08:52:48,951 [wrapper] cleanup supervisor_pilot  716393 706832
[2026-02-13 09:52:49] 2026-02-13 08:52:48,954 [wrapper] Test setup, not cleaning
[2026-02-13 09:52:49] 2026-02-13 08:52:48,956 [wrapper] apfmon messages muted
[2026-02-13 09:52:49] 2026-02-13 08:52:48,959 [wrapper] ==== wrapper stdout END ====
[2026-02-13 09:52:49] 2026-02-13 08:52:48,961 [wrapper] ==== wrapper stderr END ====
[2026-02-13 09:52:49]  *** Error codes and diagnostics ***
[2026-02-13 09:52:49]     "exeErrorCode": 0,
[2026-02-13 09:52:49]     "exeErrorDiag": "",
[2026-02-13 09:52:49]     "pilotErrorCode": 0,
[2026-02-13 09:52:49]     "pilotErrorDiag": "",
[2026-02-13 09:52:49]  *** Listing of results directory ***
[2026-02-13 09:52:49] total 945640
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc    584627 Feb 12 17:21 pilot3.tar.gz
[2026-02-13 09:52:49] -rwx------ 1 boinc boinc     36322 Feb 12 17:21 runpilot2-wrapper.sh
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc      5111 Feb 12 17:22 queuedata.json
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc       100 Feb 13 08:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-13 09:52:49] -rwxr-xr-x 1 boinc boinc      7986 Feb 13 08:21 run_atlas
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc       105 Feb 13 08:21 job.xml
[2026-02-13 09:52:49] -rw-r--r-- 2 boinc boinc 682062566 Feb 13 08:21 EVNT.48431094._000776.pool.root.1
[2026-02-13 09:52:49] -rw-r--r-- 2 boinc boinc    597961 Feb 13 08:21 input.tar.gz
[2026-02-13 09:52:49] -rw-r--r-- 2 boinc boinc     15845 Feb 13 08:21 start_atlas.sh
[2026-02-13 09:52:49] drwxrwx--x 2 boinc boinc      4096 Feb 13 08:21 shared
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc         0 Feb 13 08:21 boinc_setup_complete
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc      6443 Feb 13 08:21 init_data.xml
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc         0 Feb 13 08:21 boinc_lockfile
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc      2557 Feb 13 08:21 pandaJob.out
[2026-02-13 09:52:49] -rw------- 1 boinc boinc   1000262 Feb 13 08:21 agis_schedconf.cvmfs.json
[2026-02-13 09:52:49] -rw------- 1 boinc boinc   1512955 Feb 13 08:21 agis_ddmendpoints.agis.ALL.json
[2026-02-13 09:52:49] -rw------- 1 boinc boinc       418 Feb 13 08:21 workernode_map.json
[2026-02-13 09:52:49] drwx------ 5 boinc boinc      4096 Feb 13 08:21 pilot3
[2026-02-13 09:52:49] -rw------- 1 boinc boinc 280156421 Feb 13 09:51 HITS.48431096._041119.pool.root.1
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc       530 Feb 13 09:51 boinc_task_state.xml
[2026-02-13 09:52:49] -rw------- 1 boinc boinc      1012 Feb 13 09:51 memory_monitor_summary.json
[2026-02-13 09:52:49] -rw------- 1 boinc boinc    307500 Feb 13 09:51 log.48431096._041119.job.log.tgz.1
[2026-02-13 09:52:49] -rw------- 1 boinc boinc      6295 Feb 13 09:51 heartbeat.json
[2026-02-13 09:52:49] -rw------- 1 boinc boinc        95 Feb 13 09:52 pilot_heartbeat.json
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc        27 Feb 13 09:52 wrapper_checkpoint.txt
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc      8192 Feb 13 09:52 boinc_mmap_file
[2026-02-13 09:52:49] -rw------- 1 boinc boinc      4933 Feb 13 09:52 pilotlog.txt
[2026-02-13 09:52:49] -rw------- 1 boinc boinc    786208 Feb 13 09:52 log.48431096._041119.job.log.1
[2026-02-13 09:52:49] -rw------- 1 boinc boinc       357 Feb 13 09:52 output.list
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc       620 Feb 13 09:52 runtime_log
[2026-02-13 09:52:49] -rw------- 1 boinc boinc   1116160 Feb 13 09:52 result.tar.gz
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc      8901 Feb 13 09:52 runtime_log.err
[2026-02-13 09:52:49] -rw------- 1 boinc boinc       658 Feb 13 09:52 0XvNDm4coA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmEWmKDmefMDWo.diag
[2026-02-13 09:52:49] -rw-r--r-- 1 boinc boinc     11030 Feb 13 09:52 stderr.txt
[2026-02-13 09:52:49] HITS file was successfully produced:
[2026-02-13 09:52:49] -rw------- 1 boinc boinc 280156421 Feb 13 09:51 shared/HITS.pool.root.1
[2026-02-13 09:52:49]  *** Contents of shared directory: ***
[2026-02-13 09:52:49] total 941372
[2026-02-13 09:52:49] -rw-r--r-- 2 boinc boinc 682062566 Feb 13 08:21 ATLAS.root_0
[2026-02-13 09:52:49] -rw-r--r-- 2 boinc boinc    597961 Feb 13 08:21 input.tar.gz
[2026-02-13 09:52:49] -rw-r--r-- 2 boinc boinc     15845 Feb 13 08:21 start_atlas.sh
[2026-02-13 09:52:49] -rw------- 1 boinc boinc 280156421 Feb 13 09:51 HITS.pool.root.1
[2026-02-13 09:52:49] -rw------- 1 boinc boinc   1116160 Feb 13 09:52 result.tar.gz
09:53:11 (702733): run_atlas exited; CPU time 20609.667595
09:53:11 (702733): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN