Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:55:39 (111878): wrapper (7.7.26015): starting
10:55:39 (111878): wrapper: running run_atlas (--nthreads 8)
[2026-02-12 10:55:39] Arguments: --nthreads 8
[2026-02-12 10:55:39] Threads: 8
[2026-02-12 10:55:39] Checking for CVMFS
[2026-02-12 10:55:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 10:55:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 10:55:39] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 10:55:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 10:55:40] 2.13.3.0 12448 72049 285124 156160 2 691 35714000 40960000 33833 16776704 0 526876716 99.696 413675238 32306 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-12 10:55:40] CVMFS is ok
[2026-02-12 10:55:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 10:55:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 10:55:40] Further information can be found at the LHC@home message board.
[2026-02-12 10:55:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 10:55:40] Checking for apptainer binary...
[2026-02-12 10:55:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 10:55:40] Running /usr/bin/apptainer --version
[2026-02-12 10:55:40] apptainer version 1.4.5-2.el9
[2026-02-12 10:55:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 10:55:40] c-212-19.aglt2.org
[2026-02-12 10:55:40] apptainer works
[2026-02-12 10:55:40] Set ATHENA_PROC_NUMBER=8
[2026-02-12 10:55:40] Set ATHENA_CORE_NUMBER=8
[2026-02-12 10:55:40] Starting ATLAS job with PandaID=7013403561
[2026-02-12 10:55:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 14:36:11]  *** The last 200 lines of the pilot log: ***
[2026-02-12 14:36:11] 2026-02-12 19:35:34,041 | INFO     | reading metadata from: /tmp/boinchome/slots/3/PanDA_Pilot-7013403561/jobReport.json
[2026-02-12 14:36:11] 2026-02-12 19:35:34,043 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/3/workernode_map.json
[2026-02-12 14:36:11] 2026-02-12 19:35:34,043 | INFO     | this job has now completed (state=finished)
[2026-02-12 14:36:11] 2026-02-12 19:35:34,043 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-12 14:36:11] 2026-02-12 19:35:34,043 | INFO     | log transfer has been attempted: DONE
[2026-02-12 14:36:11] 2026-02-12 19:35:34,044 | INFO     | job 7013403561 has finished - writing final server update
[2026-02-12 14:36:11] 2026-02-12 19:35:34,044 | INFO     | total number of processed events: 400 (read)
[2026-02-12 14:36:11] 2026-02-12 19:35:34,087 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-7013403561/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 14:36:11] 2026-02-12 19:35:34,087 | INFO     | extracted standard info from prmon json
[2026-02-12 14:36:11] 2026-02-12 19:35:34,087 | INFO     | extracted standard memory fields from prmon json
[2026-02-12 14:36:11] 2026-02-12 19:35:34,088 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-12 14:36:11] 2026-02-12 19:35:34,092 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-12 14:36:11] 2026-02-12 19:35:34,093 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-12 14:36:11] 2026-02-12 19:35:34,096 | INFO     | fitting pss+swap vs Time
[2026-02-12 14:36:11] 2026-02-12 19:35:34,096 | INFO     | sum of square deviations: 3082018313.348824
[2026-02-12 14:36:11] 2026-02-12 19:35:34,102 | INFO     | sum of deviations: 10416684989.465103
[2026-02-12 14:36:11] 2026-02-12 19:35:34,102 | INFO     | mean x: 1770918371.6976745
[2026-02-12 14:36:11] 2026-02-12 19:35:34,102 | INFO     | mean y: 2553022.3302325583
[2026-02-12 14:36:11] 2026-02-12 19:35:34,103 | INFO     | intersect: -5982842567.349801
[2026-02-12 14:36:11] 2026-02-12 19:35:34,103 | INFO     | chi2: 3.1379512931594906
[2026-02-12 14:36:11] 2026-02-12 19:35:34,103 | INFO     | sum of square deviations: 2871958426.3809423
[2026-02-12 14:36:11] 2026-02-12 19:35:34,104 | INFO     | sum of deviations: 23771283242.23809
[2026-02-12 14:36:11] 2026-02-12 19:35:34,104 | INFO     | mean x: 1770918219.1904762
[2026-02-12 14:36:11] 2026-02-12 19:35:34,104 | INFO     | mean y: 2562530.719047619
[2026-02-12 14:36:11] 2026-02-12 19:35:34,104 | INFO     | intersect: -14655378963.324312
[2026-02-12 14:36:11] 2026-02-12 19:35:34,105 | INFO     | chi2: 2.4704834931328876
[2026-02-12 14:36:11] 2026-02-12 19:35:34,105 | INFO     | current chi2=2.4704834931328876 (change=21.270814543286097 %)
[2026-02-12 14:36:11] 2026-02-12 19:35:34,105 | INFO     | right removable region: 209
[2026-02-12 14:36:11] 2026-02-12 19:35:34,105 | INFO     | sum of square deviations: 2871931413.357132
[2026-02-12 14:36:11] 2026-02-12 19:35:34,114 | INFO     | sum of deviations: -38592613810.14286
[2026-02-12 14:36:11] 2026-02-12 19:35:34,114 | INFO     | mean x: 1770918524.2142856
[2026-02-12 14:36:11] 2026-02-12 19:35:34,115 | INFO     | mean y: 2588355.9142857143
[2026-02-12 14:36:11] 2026-02-12 19:35:34,115 | INFO     | intersect: 23799944510.161434
[2026-02-12 14:36:11] 2026-02-12 19:35:34,115 | INFO     | chi2: 0.8112806431324161
[2026-02-12 14:36:11] 2026-02-12 19:35:34,115 | INFO     | current chi2=0.8112806431324161 (change=74.14616839652834 %)
[2026-02-12 14:36:11] 2026-02-12 19:35:34,115 | INFO     | sum of square deviations: 2671624704.7024264
[2026-02-12 14:36:11] 2026-02-12 19:35:34,116 | INFO     | sum of deviations: -40833879497.63416
[2026-02-12 14:36:11] 2026-02-12 19:35:34,116 | INFO     | mean x: 1770918676.7268293
[2026-02-12 14:36:11] 2026-02-12 19:35:34,116 | INFO     | mean y: 2590017.024390244
[2026-02-12 14:36:11] 2026-02-12 19:35:34,117 | INFO     | intersect: 27069819826.02093
[2026-02-12 14:36:11] 2026-02-12 19:35:34,117 | INFO     | chi2: 0.7801493535314956
[2026-02-12 14:36:11] 2026-02-12 19:35:34,128 | INFO     | current chi2=0.7801493535314956 (change=3.8373021548647106 %)
[2026-02-12 14:36:11] 2026-02-12 19:35:34,129 | INFO     | left removable region: 20
[2026-02-12 14:36:11] 2026-02-12 19:35:34,129 | INFO     | sum of square deviations: 2093585023.2380881
[2026-02-12 14:36:11] 2026-02-12 19:35:34,130 | INFO     | sum of deviations: -20279241365.968266
[2026-02-12 14:36:11] 2026-02-12 19:35:34,130 | INFO     | mean x: 1770918798.7301588
[2026-02-12 14:36:11] 2026-02-12 19:35:34,130 | INFO     | mean y: 2595281.275132275
[2026-02-12 14:36:11] 2026-02-12 19:35:34,130 | INFO     | intersect: 17156371870.40741
[2026-02-12 14:36:11] 2026-02-12 19:35:34,130 | INFO     | chi2: 0.07772362556961823
[2026-02-12 14:36:11] 2026-02-12 19:35:34,131 | INFO     | current memory leak: -9.69 B/s (using 189 data points, chi2=0.08)
[2026-02-12 14:36:11] 2026-02-12 19:35:34,131 | INFO     | could have reported an average CPU frequency of 3137 MHz (11 samples)
[2026-02-12 14:36:11] 2026-02-12 19:35:34,131 | INFO     | ..............................
[2026-02-12 14:36:11] 2026-02-12 19:35:34,131 | INFO     | . Timing measurements:
[2026-02-12 14:36:11] 2026-02-12 19:35:34,131 | INFO     | . get job = 0 s
[2026-02-12 14:36:11] 2026-02-12 19:35:34,132 | INFO     | . initial setup = 20 s
[2026-02-12 14:36:11] 2026-02-12 19:35:34,132 | INFO     | . payload setup = 27 s
[2026-02-12 14:36:11] 2026-02-12 19:35:34,132 | INFO     | . stage-in = 0 s
[2026-02-12 14:36:11] 2026-02-12 19:35:34,132 | INFO     | . payload execution = 13095 s
[2026-02-12 14:36:11] 2026-02-12 19:35:34,132 | INFO     | . stage-out = 3 s
[2026-02-12 14:36:11] 2026-02-12 19:35:34,132 | INFO     | . log creation = 0 s
[2026-02-12 14:36:11] 2026-02-12 19:35:34,132 | INFO     | ..............................
[2026-02-12 14:36:11] 2026-02-12 19:35:34,536 | INFO     | time since job start (13136s) is within the limit (349056.0s)
[2026-02-12 14:36:11] 2026-02-12 19:35:34,776 | INFO     | 
[2026-02-12 14:36:11] 2026-02-12 19:35:34,776 | INFO     | job summary report
[2026-02-12 14:36:11] 2026-02-12 19:35:34,776 | INFO     | --------------------------------------------------
[2026-02-12 14:36:11] 2026-02-12 19:35:34,776 | INFO     | PanDA job id: 7013403561
[2026-02-12 14:36:11] 2026-02-12 19:35:34,776 | INFO     | task id: 48431096
[2026-02-12 14:36:11] 2026-02-12 19:35:34,776 | INFO     | errors: (none)
[2026-02-12 14:36:11] 2026-02-12 19:35:34,776 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-12 14:36:11] 2026-02-12 19:35:34,776 | INFO     | pilot state: finished 
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | transexitcode: 0
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | exeerrorcode: 0
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | exeerrordiag: 
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | exitcode: 0
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | exitmsg: OK
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | cpuconsumptiontime: 49320 s
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | nevents: 400
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | neventsw: 0
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | pid: 123642
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | pgrp: 123642
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | corecount: 8
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | event service: False
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | sizes: {0: 2247759, 1: 2282241, 13126: 2312284, 13129: 2321282, 13132: 2321338, 13135: 2321532}
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | --------------------------------------------------
[2026-02-12 14:36:11] 2026-02-12 19:35:34,777 | INFO     | 
[2026-02-12 14:36:11] 2026-02-12 19:35:34,778 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-02-12 14:36:11] 2026-02-12 19:35:34,901 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,901 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,901 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,901 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,901 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,901 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,901 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,902 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,902 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,902 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,902 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,902 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,902 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,902 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,902 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,902 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,902 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,902 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 14:36:11] 2026-02-12 19:35:34,903 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,903 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 14:36:11] 2026-02-12 19:35:34,903 | INFO     | job 7013403561 has completed (purged errors)
[2026-02-12 14:36:11] 2026-02-12 19:35:34,903 | INFO     | overall cleanup function is called
[2026-02-12 14:36:11] 2026-02-12 19:35:35,911 | INFO     | --- collectZombieJob: --- 10, [123642]
[2026-02-12 14:36:11] 2026-02-12 19:35:35,911 | INFO     | zombie collector waiting for pid 123642
[2026-02-12 14:36:11] 2026-02-12 19:35:35,912 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 14:36:11] 2026-02-12 19:35:35,912 | INFO     | collected zombie processes
[2026-02-12 14:36:11] 2026-02-12 19:35:35,912 | INFO     | will attempt to kill all subprocesses of pid=123642
[2026-02-12 14:36:11] 2026-02-12 19:35:36,886 | INFO     | PID=116634 has CPU usage=13.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-12 14:36:11] 2026-02-12 19:35:36,887 | INFO     | .. there are 48 such processes running
[2026-02-12 14:36:11] 2026-02-12 19:35:37,104 | INFO     | process IDs to be killed: [123642] (in reverse order)
[2026-02-12 14:36:11] 2026-02-12 19:35:37,448 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 14:36:11] 2026-02-12 19:35:37,448 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 14:36:11] 2026-02-12 19:35:37,530 | INFO     | did not find any defunct processes belonging to 123642
[2026-02-12 14:36:11] 2026-02-12 19:35:37,619 | INFO     | did not find any defunct processes belonging to 123642
[2026-02-12 14:36:11] 2026-02-12 19:35:37,620 | INFO     | ready for new job
[2026-02-12 14:36:11] 2026-02-12 19:35:37,620 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 14:36:11] 2026-02-12 19:35:37,621 | INFO     | **************************************
[2026-02-12 14:36:11] 2026-02-12 19:35:37,621 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 14:36:11] 2026-02-12 19:35:37,621 | INFO     | **************************************
[2026-02-12 14:36:11] 2026-02-12 19:35:37,621 | INFO     | 
[2026-02-12 14:36:11] 2026-02-12 19:35:37,626 | INFO     | architecture information:
[2026-02-12 14:36:11] 2026-02-12 19:35:37,627 | INFO     | executing command: cat /etc/os-release
[2026-02-12 14:36:11] 2026-02-12 19:35:37,777 | INFO     | cat /etc/os-release:
[2026-02-12 14:36:11] NAME="CentOS Linux"
[2026-02-12 14:36:11] VERSION="7 (Core)"
[2026-02-12 14:36:11] ID="centos"
[2026-02-12 14:36:11] ID_LIKE="rhel fedora"
[2026-02-12 14:36:11] VERSION_ID="7"
[2026-02-12 14:36:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 14:36:11] ANSI_COLOR="0;31"
[2026-02-12 14:36:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 14:36:11] HOME_URL="https://www.centos.org/"
[2026-02-12 14:36:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 14:36:11] 
[2026-02-12 14:36:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 14:36:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 14:36:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 14:36:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 14:36:11] 
[2026-02-12 14:36:11] 2026-02-12 19:35:37,777 | INFO     | **************************************
[2026-02-12 14:36:11] 2026-02-12 19:35:38,281 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-02-12 14:36:11] 2026-02-12 19:35:38,400 | INFO     | sufficient remaining disk space (122423345152 B)
[2026-02-12 14:36:11] 2026-02-12 19:35:38,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 14:36:11] 2026-02-12 19:35:38,400 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 14:36:11] 2026-02-12 19:35:38,400 | INFO     | update_server=False
[2026-02-12 14:36:11] 2026-02-12 19:35:38,401 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 14:36:11] 2026-02-12 19:35:38,401 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 14:36:11] 2026-02-12 19:35:38,401 | INFO     | aborting loop
[2026-02-12 14:36:11] 2026-02-12 19:35:38,407 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 14:36:11] 2026-02-12 19:35:38,934 | INFO     | all payload control threads have been joined
[2026-02-12 14:36:11] 2026-02-12 19:35:39,012 | INFO     | all job control threads have been joined
[2026-02-12 14:36:11] 2026-02-12 19:35:39,331 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 14:36:11] 2026-02-12 19:35:39,337 | INFO     | all data control threads have been joined
[2026-02-12 14:36:11] 2026-02-12 19:35:39,359 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 14:36:11] 2026-02-12 19:35:39,418 | INFO     | [job] retrieve thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:39,419 | INFO     | [job] job monitor thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:39,424 | INFO     | [payload] validate_post thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:39,785 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:39,940 | INFO     | [payload] control thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:40,018 | INFO     | [job] control thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:40,066 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:40,227 | INFO     | [data] copytool_in thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:40,247 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:40,271 | INFO     | [job] validate thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:40,337 | INFO     | [job] queue monitor thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:40,350 | INFO     | [data] control thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:40,609 | INFO     | [payload] failed_post thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:41,371 | INFO     | [data] copytool_out thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:42,428 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:35:49,413 | INFO     | job.realtimelogging is not enabled
[2026-02-12 14:36:11] 2026-02-12 19:35:50,419 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 14:36:11] 2026-02-12 19:36:00,368 | INFO     | [monitor] cgroup control has ended
[2026-02-12 14:36:11] 2026-02-12 19:36:01,877 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140090565248832)>', '<ExcThread(monitor, started 140090223359744)>']
[2026-02-12 14:36:11] 2026-02-12 19:36:06,903 | INFO     | all workflow threads have been joined
[2026-02-12 14:36:11] 2026-02-12 19:36:06,906 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 14:36:11] 2026-02-12 19:36:06,907 | INFO     | traces error code: 0
[2026-02-12 14:36:11] 2026-02-12 19:36:06,907 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 14:36:11] 2026-02-12 19:36:09,717 | INFO     | PID=116634 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-12 14:36:11] 2026-02-12 19:36:09,718 | INFO     | .. there are 48 such processes running
[2026-02-12 14:36:11] 2026-02-12 19:36:09,718 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 14:36:11] 2026-02-12 19:36:09,718 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 14:36:11] 2026-02-12 19:36:09,719 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 14:36:11] 2026-02-12 19:36:09,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 14:36:11] 2026-02-12 19:36:09,719 | INFO     | [monitor] control thread has ended
[2026-02-12 14:36:11] 2026-02-12 19:36:09,917 [wrapper] ==== pilot stdout END ====
[2026-02-12 14:36:11] 2026-02-12 19:36:09,988 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 14:36:11] 2026-02-12 19:36:10,014 [wrapper] pilotpid: 116634
[2026-02-12 14:36:11] 2026-02-12 19:36:10,089 [wrapper] Pilot exit status: 0
[2026-02-12 14:36:11] 2026-02-12 19:36:10,231 [wrapper] pandaids: 7013403561
[2026-02-12 14:36:11] 2026-02-12 19:36:10,982 [wrapper] cleanup supervisor_pilot 1938837 116635
[2026-02-12 14:36:11] 2026-02-12 19:36:11,003 [wrapper] Test setup, not cleaning
[2026-02-12 14:36:11] 2026-02-12 19:36:11,021 [wrapper] apfmon messages muted
[2026-02-12 14:36:11] 2026-02-12 19:36:11,054 [wrapper] ==== wrapper stdout END ====
[2026-02-12 14:36:11] 2026-02-12 19:36:11,057 [wrapper] ==== wrapper stderr END ====
[2026-02-12 14:36:11]  *** Error codes and diagnostics ***
[2026-02-12 14:36:11]     "exeErrorCode": 0,
[2026-02-12 14:36:11]     "exeErrorDiag": "",
[2026-02-12 14:36:11]     "pilotErrorCode": 0,
[2026-02-12 14:36:11]     "pilotErrorDiag": "",
[2026-02-12 14:36:11]  *** Listing of results directory ***
[2026-02-12 14:36:11] total 953408
[2026-02-12 14:36:11] -rw-r--r--. 1 boincer umatlas    584627 Feb 12 02:21 pilot3.tar.gz
[2026-02-12 14:36:11] -rwx------. 1 boincer umatlas     36322 Feb 12 02:25 runpilot2-wrapper.sh
[2026-02-12 14:36:11] -rw-r--r--. 1 boincer umatlas      5111 Feb 12 02:28 queuedata.json
[2026-02-12 14:36:11] -rw-r--r--. 1 boincer umatlas       100 Feb 12 10:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 14:36:11] -rwxr-xr-x. 1 boincer umatlas      7986 Feb 12 10:55 run_atlas
[2026-02-12 14:36:11] -rw-r--r--. 1 boincer umatlas       105 Feb 12 10:55 job.xml
[2026-02-12 14:36:11] -rw-r--r--. 2 boincer umatlas 680110671 Feb 12 10:55 EVNT.48431094._000206.pool.root.1
[2026-02-12 14:36:11] -rw-r--r--. 2 boincer umatlas     15845 Feb 12 10:55 start_atlas.sh
[2026-02-12 14:36:11] drwxrwx--x. 2 boincer umatlas      4096 Feb 12 10:55 shared
[2026-02-12 14:36:11] -rw-r--r--. 2 boincer umatlas    597963 Feb 12 10:55 input.tar.gz
[2026-02-12 14:36:11] -rw-r--r--. 1 boincer umatlas         0 Feb 12 10:55 boinc_lockfile
[2026-02-12 14:36:11] -rw-r--r--. 1 boincer umatlas      2555 Feb 12 10:55 pandaJob.out
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas        57 Feb 12 10:55 setup.sh.local
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas    999474 Feb 12 10:56 agis_schedconf.cvmfs.json
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas       430 Feb 12 10:56 workernode_map.json
[2026-02-12 14:36:11] drwx------. 5 boincer umatlas      4096 Feb 12 10:56 pilot3
[2026-02-12 14:36:11] -rw-r--r--. 1 boincer umatlas      6959 Feb 12 14:27 init_data.xml
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas 287998756 Feb 12 14:34 HITS.48431096._037138.pool.root.1
[2026-02-12 14:36:11] -rw-r--r--. 1 boincer umatlas       532 Feb 12 14:34 boinc_task_state.xml
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas      1066 Feb 12 14:35 memory_monitor_summary.json
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas   1512955 Feb 12 14:35 agis_ddmendpoints.agis.ALL.json
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas    436241 Feb 12 14:35 log.48431096._037138.job.log.tgz.1
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas      6367 Feb 12 14:35 heartbeat.json
[2026-02-12 14:36:11] -rw-r--r--. 1 boincer umatlas      8192 Feb 12 14:36 boinc_mmap_file
[2026-02-12 14:36:11] -rw-r--r--. 1 boincer umatlas        28 Feb 12 14:36 wrapper_checkpoint.txt
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas        95 Feb 12 14:36 pilot_heartbeat.json
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas       822 Feb 12 14:36 pilotlog.txt
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas   1685501 Feb 12 14:36 log.48431096._037138.job.log.1
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas       357 Feb 12 14:36 output.list
[2026-02-12 14:36:11] -rw-r--r--. 1 boincer umatlas       620 Feb 12 14:36 runtime_log
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas   2140160 Feb 12 14:36 result.tar.gz
[2026-02-12 14:36:11] -rw-r--r--. 1 boincer umatlas      9342 Feb 12 14:36 runtime_log.err
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas       660 Feb 12 14:36 LGlLDmPGgA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmjulKDmBoToSo.diag
[2026-02-12 14:36:11] -rw-r--r--. 1 boincer umatlas     21386 Feb 12 14:36 stderr.txt
[2026-02-12 14:36:11] HITS file was successfully produced:
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas 287998756 Feb 12 14:34 shared/HITS.pool.root.1
[2026-02-12 14:36:11]  *** Contents of shared directory: ***
[2026-02-12 14:36:11] total 948124
[2026-02-12 14:36:11] -rw-r--r--. 2 boincer umatlas 680110671 Feb 12 10:55 ATLAS.root_0
[2026-02-12 14:36:11] -rw-r--r--. 2 boincer umatlas     15845 Feb 12 10:55 start_atlas.sh
[2026-02-12 14:36:11] -rw-r--r--. 2 boincer umatlas    597963 Feb 12 10:55 input.tar.gz
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas 287998756 Feb 12 14:34 HITS.pool.root.1
[2026-02-12 14:36:11] -rw-------. 1 boincer umatlas   2140160 Feb 12 14:36 result.tar.gz
14:36:13 (111878): run_atlas exited; CPU time 49841.557123
14:36:13 (111878): called boinc_finish(0)

</stderr_txt>
]]>

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