Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:34:43 (8772): wrapper (7.7.26015): starting
11:34:43 (8772): wrapper: running run_atlas (--nthreads 8)
[2026-02-13 11:34:43] Arguments: --nthreads 8
[2026-02-13 11:34:43] Threads: 8
[2026-02-13 11:34:43] Checking for CVMFS
[2026-02-13 11:34:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-13 11:34:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-13 11:34:50] Running cvmfs_config stat atlas.cern.ch
[2026-02-13 11:34:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-13 11:34:51] 2.11.2.0 7073 50204 109404 156191 3 53 24332430 25165825 4834 130560 0 16863658 99.766 19109627 3359 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-13 11:34:51] CVMFS is ok
[2026-02-13 11:34:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-13 11:34:51] Checking for apptainer binary...
[2026-02-13 11:34:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-13 11:34:51] Running /usr/bin/apptainer --version
[2026-02-13 11:34:51] apptainer version 1.3.2-1.el7
[2026-02-13 11:34:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-13 11:35:07] cg-vwn391.simple-grid.lan
[2026-02-13 11:35:07] apptainer works
[2026-02-13 11:35:07] Set ATHENA_PROC_NUMBER=8
[2026-02-13 11:35:07] Set ATHENA_CORE_NUMBER=8
[2026-02-13 11:35:07] Starting ATLAS job with PandaID=7009369624
[2026-02-13 11:35:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/27 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-13 17:04:11]  *** The last 200 lines of the pilot log: ***
[2026-02-13 17:04:11] 2026-02-13 16:03:00,351 | INFO     | extracted standard memory fields from prmon json
[2026-02-13 17:04:11] 2026-02-13 16:03:00,351 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-13 17:04:11] 2026-02-13 16:03:00,352 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-13 17:04:11] 2026-02-13 16:03:00,352 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-13 17:04:11] 2026-02-13 16:03:00,358 | INFO     | fitting pss+swap vs Time
[2026-02-13 17:04:11] 2026-02-13 16:03:00,359 | INFO     | sum of square deviations: 9508390372.0
[2026-02-13 17:04:11] 2026-02-13 16:03:00,362 | INFO     | sum of deviations: 144233253831.0
[2026-02-13 17:04:11] 2026-02-13 16:03:00,362 | INFO     | mean x: 1770989005.0
[2026-02-13 17:04:11] 2026-02-13 16:03:00,362 | INFO     | mean y: 2490961.725239617
[2026-02-13 17:04:11] 2026-02-13 16:03:00,362 | INFO     | intersect: -26861730709.512966
[2026-02-13 17:04:11] 2026-02-13 16:03:00,363 | INFO     | chi2: 6.57527315628948
[2026-02-13 17:04:11] 2026-02-13 16:03:00,363 | INFO     | sum of square deviations: 9059954057.0
[2026-02-13 17:04:11] 2026-02-13 16:03:00,366 | INFO     | sum of deviations: 162723484344.00003
[2026-02-13 17:04:11] 2026-02-13 16:03:00,366 | INFO     | mean x: 1770988852.5
[2026-02-13 17:04:11] 2026-02-13 16:03:00,367 | INFO     | mean y: 2497156.3571428573
[2026-02-13 17:04:11] 2026-02-13 16:03:00,367 | INFO     | intersect: -31805774166.00397
[2026-02-13 17:04:11] 2026-02-13 16:03:00,367 | INFO     | chi2: 5.842238261797425
[2026-02-13 17:04:11] 2026-02-13 16:03:00,367 | INFO     | current chi2=5.842238261797425 (change=11.148356533156068 %)
[2026-02-13 17:04:11] 2026-02-13 16:03:00,367 | INFO     | right removable region: 307
[2026-02-13 17:04:11] 2026-02-13 16:03:00,368 | INFO     | sum of square deviations: 9059954057.0
[2026-02-13 17:04:11] 2026-02-13 16:03:00,371 | INFO     | sum of deviations: 37458289001.49999
[2026-02-13 17:04:11] 2026-02-13 16:03:00,371 | INFO     | mean x: 1770989157.5
[2026-02-13 17:04:11] 2026-02-13 16:03:00,371 | INFO     | mean y: 2527247.237012987
[2026-02-13 17:04:11] 2026-02-13 16:03:00,371 | INFO     | intersect: -7319609627.055747
[2026-02-13 17:04:11] 2026-02-13 16:03:00,372 | INFO     | chi2: 2.2068102474796643
[2026-02-13 17:04:11] 2026-02-13 16:03:00,372 | INFO     | current chi2=2.2068102474796643 (change=66.43774037936701 %)
[2026-02-13 17:04:11] 2026-02-13 16:03:00,373 | INFO     | sum of square deviations: 8625843592.0
[2026-02-13 17:04:11] 2026-02-13 16:03:00,376 | INFO     | sum of deviations: -16650181434.000004
[2026-02-13 17:04:11] 2026-02-13 16:03:00,376 | INFO     | mean x: 1770989310.0
[2026-02-13 17:04:11] 2026-02-13 16:03:00,376 | INFO     | mean y: 2546165.3531353134
[2026-02-13 17:04:11] 2026-02-13 16:03:00,376 | INFO     | intersect: 3421028429.107875
[2026-02-13 17:04:11] 2026-02-13 16:03:00,379 | INFO     | chi2: 0.865899937154669
[2026-02-13 17:04:11] 2026-02-13 16:03:00,379 | INFO     | current chi2=0.865899937154669 (change=60.762374647136575 %)
[2026-02-13 17:04:11] 2026-02-13 16:03:00,379 | INFO     | sum of square deviations: 8205826414.5
[2026-02-13 17:04:11] 2026-02-13 16:03:00,382 | INFO     | sum of deviations: -13734770064.999996
[2026-02-13 17:04:11] 2026-02-13 16:03:00,382 | INFO     | mean x: 1770989462.5
[2026-02-13 17:04:11] 2026-02-13 16:03:00,382 | INFO     | mean y: 2545084.637583893
[2026-02-13 17:04:11] 2026-02-13 16:03:00,382 | INFO     | intersect: 2966796559.9056673
[2026-02-13 17:04:11] 2026-02-13 16:03:00,383 | INFO     | chi2: 0.8441309690070063
[2026-02-13 17:04:11] 2026-02-13 16:03:00,383 | INFO     | current chi2=0.8441309690070063 (change=2.5140281473163086 %)
[2026-02-13 17:04:11] 2026-02-13 16:03:00,383 | INFO     | left removable region: 30
[2026-02-13 17:04:11] 2026-02-13 16:03:00,384 | INFO     | sum of square deviations: 6590404498.0
[2026-02-13 17:04:11] 2026-02-13 16:03:00,386 | INFO     | sum of deviations: 14997661482.999998
[2026-02-13 17:04:11] 2026-02-13 16:03:00,386 | INFO     | mean x: 1770989737.0
[2026-02-13 17:04:11] 2026-02-13 16:03:00,386 | INFO     | mean y: 2549123.548736462
[2026-02-13 17:04:11] 2026-02-13 16:03:00,386 | INFO     | intersect: -4027659427.9071894
[2026-02-13 17:04:11] 2026-02-13 16:03:00,387 | INFO     | chi2: 0.0005089313121025853
[2026-02-13 17:04:11] 2026-02-13 16:03:00,387 | INFO     | current memory leak: 2.28 B/s (using 277 data points, chi2=0.00)
[2026-02-13 17:04:11] 2026-02-13 16:03:00,388 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-02-13 17:04:11] 2026-02-13 16:03:00,388 | INFO     | ..............................
[2026-02-13 17:04:11] 2026-02-13 16:03:00,388 | INFO     | . Timing measurements:
[2026-02-13 17:04:11] 2026-02-13 16:03:00,388 | INFO     | . get job = 0 s
[2026-02-13 17:04:11] 2026-02-13 16:03:00,388 | INFO     | . initial setup = 103 s
[2026-02-13 17:04:11] 2026-02-13 16:03:00,388 | INFO     | . payload setup = 124 s
[2026-02-13 17:04:11] 2026-02-13 16:03:00,388 | INFO     | . stage-in = 0 s
[2026-02-13 17:04:11] 2026-02-13 16:03:00,388 | INFO     | . payload execution = 19205 s
[2026-02-13 17:04:11] 2026-02-13 16:03:00,389 | INFO     | . stage-out = 3 s
[2026-02-13 17:04:11] 2026-02-13 16:03:00,389 | INFO     | . log creation = 1 s
[2026-02-13 17:04:11] 2026-02-13 16:03:00,389 | INFO     | ..............................
[2026-02-13 17:04:11] 2026-02-13 16:03:00,520 | INFO     | 
[2026-02-13 17:04:11] 2026-02-13 16:03:00,520 | INFO     | job summary report
[2026-02-13 17:04:11] 2026-02-13 16:03:00,520 | INFO     | --------------------------------------------------
[2026-02-13 17:04:11] 2026-02-13 16:03:00,520 | INFO     | PanDA job id: 7009369624
[2026-02-13 17:04:11] 2026-02-13 16:03:00,520 | INFO     | task id: 48431113
[2026-02-13 17:04:11] 2026-02-13 16:03:00,520 | INFO     | errors: (none)
[2026-02-13 17:04:11] 2026-02-13 16:03:00,520 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-13 17:04:11] 2026-02-13 16:03:00,521 | INFO     | pilot state: finished 
[2026-02-13 17:04:11] 2026-02-13 16:03:00,521 | INFO     | transexitcode: 0
[2026-02-13 17:04:11] 2026-02-13 16:03:00,521 | INFO     | exeerrorcode: 0
[2026-02-13 17:04:11] 2026-02-13 16:03:00,521 | INFO     | exeerrordiag: 
[2026-02-13 17:04:11] 2026-02-13 16:03:00,521 | INFO     | exitcode: 0
[2026-02-13 17:04:11] 2026-02-13 16:03:00,521 | INFO     | exitmsg: OK
[2026-02-13 17:04:11] 2026-02-13 16:03:00,521 | INFO     | cpuconsumptiontime: 73229 s
[2026-02-13 17:04:11] 2026-02-13 16:03:00,521 | INFO     | nevents: 400
[2026-02-13 17:04:11] 2026-02-13 16:03:00,521 | INFO     | neventsw: 0
[2026-02-13 17:04:11] 2026-02-13 16:03:00,521 | INFO     | pid: 17395
[2026-02-13 17:04:11] 2026-02-13 16:03:00,522 | INFO     | pgrp: 17395
[2026-02-13 17:04:11] 2026-02-13 16:03:00,522 | INFO     | corecount: 8
[2026-02-13 17:04:11] 2026-02-13 16:03:00,522 | INFO     | event service: False
[2026-02-13 17:04:11] 2026-02-13 16:03:00,522 | INFO     | sizes: {0: 2281764, 1: 2282221, 2: 2282309, 12: 2282309, 19333: 2314986, 19334: 2314985, 19337: 2324169, 19339: 2324225, 19340: 2324419}
[2026-02-13 17:04:11] 2026-02-13 16:03:00,522 | INFO     | --------------------------------------------------
[2026-02-13 17:04:11] 2026-02-13 16:03:00,522 | INFO     | 
[2026-02-13 17:04:11] 2026-02-13 16:03:00,522 | INFO     | executing command: ls -lF /var/lib/boinc/slots/27
[2026-02-13 17:04:11] 2026-02-13 16:03:00,800 | INFO     | time since job start (19352s) is within the limit (349056.0s)
[2026-02-13 17:04:11] 2026-02-13 16:03:00,975 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,975 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,975 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,975 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,975 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,975 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,975 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,976 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,976 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,976 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,976 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,976 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,976 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,976 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,976 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,976 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,976 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,976 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-13 17:04:11] 2026-02-13 16:03:00,977 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,977 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-13 17:04:11] 2026-02-13 16:03:00,977 | INFO     | job 7009369624 has completed (purged errors)
[2026-02-13 17:04:11] 2026-02-13 16:03:00,977 | INFO     | overall cleanup function is called
[2026-02-13 17:04:11] 2026-02-13 16:03:01,939 | INFO     | PID=12886 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-13 17:04:11] 2026-02-13 16:03:01,939 | INFO     | .. there are 9 such processes running
[2026-02-13 17:04:11] 2026-02-13 16:03:01,986 | INFO     | --- collectZombieJob: --- 10, [17395]
[2026-02-13 17:04:11] 2026-02-13 16:03:01,986 | INFO     | zombie collector waiting for pid 17395
[2026-02-13 17:04:11] 2026-02-13 16:03:01,986 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-13 17:04:11] 2026-02-13 16:03:01,986 | INFO     | collected zombie processes
[2026-02-13 17:04:11] 2026-02-13 16:03:01,986 | INFO     | will attempt to kill all subprocesses of pid=17395
[2026-02-13 17:04:11] 2026-02-13 16:03:02,100 | INFO     | process IDs to be killed: [17395] (in reverse order)
[2026-02-13 17:04:11] 2026-02-13 16:03:03,108 | WARNING  | found no corresponding commands to process id(s)
[2026-02-13 17:04:11] 2026-02-13 16:03:03,109 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-13 17:04:11] 2026-02-13 16:03:03,111 | INFO     | did not find any defunct processes belonging to 17395
[2026-02-13 17:04:11] 2026-02-13 16:03:03,114 | INFO     | did not find any defunct processes belonging to 17395
[2026-02-13 17:04:11] 2026-02-13 16:03:03,114 | INFO     | ready for new job
[2026-02-13 17:04:11] 2026-02-13 16:03:03,114 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-13 17:04:11] 2026-02-13 16:03:03,116 | INFO     | **************************************
[2026-02-13 17:04:11] 2026-02-13 16:03:03,116 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-13 17:04:11] 2026-02-13 16:03:03,117 | INFO     | **************************************
[2026-02-13 17:04:11] 2026-02-13 16:03:03,117 | INFO     | 
[2026-02-13 17:04:11] 2026-02-13 16:03:03,117 | INFO     | pilot is running in a VM
[2026-02-13 17:04:11] 2026-02-13 16:03:03,117 | INFO     | architecture information:
[2026-02-13 17:04:11] 2026-02-13 16:03:03,123 | INFO     | executing command: cat /etc/os-release
[2026-02-13 17:04:11] 2026-02-13 16:03:03,410 | INFO     | cat /etc/os-release:
[2026-02-13 17:04:11] NAME="CentOS Linux"
[2026-02-13 17:04:11] VERSION="7 (Core)"
[2026-02-13 17:04:11] ID="centos"
[2026-02-13 17:04:11] ID_LIKE="rhel fedora"
[2026-02-13 17:04:11] VERSION_ID="7"
[2026-02-13 17:04:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-13 17:04:11] ANSI_COLOR="0;31"
[2026-02-13 17:04:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-13 17:04:11] HOME_URL="https://www.centos.org/"
[2026-02-13 17:04:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-13 17:04:11] 
[2026-02-13 17:04:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-13 17:04:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-13 17:04:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-13 17:04:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-13 17:04:11] 
[2026-02-13 17:04:11] 2026-02-13 16:03:03,410 | INFO     | **************************************
[2026-02-13 17:04:11] 2026-02-13 16:03:03,914 | INFO     | executing command: df -mP /var/lib/boinc/slots/27
[2026-02-13 17:04:11] 2026-02-13 16:03:04,093 | INFO     | sufficient remaining disk space (495315845120 B)
[2026-02-13 17:04:11] 2026-02-13 16:03:04,094 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-13 17:04:11] 2026-02-13 16:03:04,094 | INFO     | current server update state: UPDATING_FINAL
[2026-02-13 17:04:11] 2026-02-13 16:03:04,094 | INFO     | update_server=False
[2026-02-13 17:04:11] 2026-02-13 16:03:04,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-13 17:04:11] 2026-02-13 16:03:04,157 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-13 17:04:11] 2026-02-13 16:03:04,157 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-13 17:04:11] 2026-02-13 16:03:04,157 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-13 17:04:11] 2026-02-13 16:03:04,157 | INFO     | will abort loop
[2026-02-13 17:04:11] 2026-02-13 16:03:04,559 | INFO     | all data control threads have been joined
[2026-02-13 17:04:11] 2026-02-13 16:03:04,679 | INFO     | all payload control threads have been joined
[2026-02-13 17:04:11] 2026-02-13 16:03:04,980 | INFO     | all job control threads have been joined
[2026-02-13 17:04:11] 2026-02-13 16:03:05,100 | INFO     | [job] retrieve thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:05,133 | INFO     | [job] create_data_payload thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:05,163 | INFO     | [payload] validate_pre thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:05,163 | INFO     | [job] job monitor thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:05,368 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-13 17:04:11] 2026-02-13 16:03:05,414 | INFO     | [payload] execute_payloads thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:05,534 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-13 17:04:11] 2026-02-13 16:03:05,546 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-13 17:04:11] 2026-02-13 16:03:05,565 | INFO     | [data] control thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:05,596 | INFO     | [payload] failed_post thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:05,685 | INFO     | [payload] control thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:05,985 | INFO     | [job] control thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:06,150 | INFO     | [job] validate thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:06,158 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:06,266 | INFO     | [payload] validate_post thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:06,419 | INFO     | [data] copytool_in thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:06,540 | INFO     | [job] queue monitor thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:07,554 | INFO     | [data] copytool_out thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:09,379 | INFO     | [data] queue_monitor thread has finished
[2026-02-13 17:04:11] 2026-02-13 16:03:34,148 | INFO     | PID=12886 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-13 17:04:11] 2026-02-13 16:03:34,149 | INFO     | .. there are 9 such processes running
[2026-02-13 17:04:11] 2026-02-13 16:03:34,150 | INFO     | found 0 job(s) in 20 queues
[2026-02-13 17:04:11] 2026-02-13 16:03:34,150 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-13 17:04:11] 2026-02-13 16:03:34,150 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-13 17:04:11] 2026-02-13 16:04:00,877 | INFO     | [monitor] cgroup control has ended
[2026-02-13 17:04:11] 2026-02-13 16:04:02,735 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140066348689216)>', '<ExcThread(monitor, started 140065762162432)>']
[2026-02-13 17:04:11] 2026-02-13 16:04:03,327 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-13 17:04:11] 2026-02-13 16:04:03,327 | INFO     | [monitor] control thread has ended
[2026-02-13 17:04:11] 2026-02-13 16:04:07,761 | INFO     | all workflow threads have been joined
[2026-02-13 17:04:11] 2026-02-13 16:04:07,761 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-13 17:04:11] 2026-02-13 16:04:07,761 | INFO     | traces error code: 0
[2026-02-13 17:04:11] 2026-02-13 16:04:07,761 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-13 17:04:11] 2026-02-13 16:04:07,930 [wrapper] ==== pilot stdout END ====
[2026-02-13 17:04:11] 2026-02-13 16:04:07,937 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-13 17:04:11] 2026-02-13 16:04:07,942 [wrapper] pilotpid: 12886
[2026-02-13 17:04:11] 2026-02-13 16:04:07,998 [wrapper] Pilot exit status: 0
[2026-02-13 17:04:11] 2026-02-13 16:04:08,051 [wrapper] pandaids: 7009369624
[2026-02-13 17:04:11] 2026-02-13 16:04:08,141 [wrapper] cleanup supervisor_pilot 29880 12887
[2026-02-13 17:04:11] 2026-02-13 16:04:08,304 [wrapper] Test setup, not cleaning
[2026-02-13 17:04:11] 2026-02-13 16:04:08,396 [wrapper] apfmon messages muted
[2026-02-13 17:04:11] 2026-02-13 16:04:08,514 [wrapper] ==== wrapper stdout END ====
[2026-02-13 17:04:11] 2026-02-13 16:04:08,580 [wrapper] ==== wrapper stderr END ====
[2026-02-13 17:04:11]  *** Error codes and diagnostics ***
[2026-02-13 17:04:11]     "exeErrorCode": 0,
[2026-02-13 17:04:11]     "exeErrorDiag": "",
[2026-02-13 17:04:11]     "pilotErrorCode": 0,
[2026-02-13 17:04:11]     "pilotErrorDiag": "",
[2026-02-13 17:04:11]  *** Listing of results directory ***
[2026-02-13 17:04:11] total 893728
[2026-02-13 17:04:11] -rw-r--r--. 1 boinc boinc    584627 Feb 12 10:23 pilot3.tar.gz
[2026-02-13 17:04:11] -rwx------. 1 boinc boinc     36322 Feb 12 10:25 runpilot2-wrapper.sh
[2026-02-13 17:04:11] -rw-r--r--. 1 boinc boinc      5111 Feb 12 10:27 queuedata.json
[2026-02-13 17:04:11] -rw-r--r--. 1 boinc boinc       100 Feb 13 11:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-13 17:04:11] -rwxr-xr-x. 1 boinc boinc      7986 Feb 13 11:34 run_atlas
[2026-02-13 17:04:11] -rw-r--r--. 1 boinc boinc       105 Feb 13 11:34 job.xml
[2026-02-13 17:04:11] -rw-r--r--. 1 boinc boinc      6392 Feb 13 11:34 init_data.xml
[2026-02-13 17:04:11] -rw-r--r--. 2 boinc boinc 650315536 Feb 13 11:34 EVNT.48431111._000246.pool.root.1
[2026-02-13 17:04:11] -rw-r--r--. 2 boinc boinc     15845 Feb 13 11:34 start_atlas.sh
[2026-02-13 17:04:11] drwxrwx--x. 2 boinc boinc        68 Feb 13 11:34 shared
[2026-02-13 17:04:11] -rw-r--r--. 2 boinc boinc    597960 Feb 13 11:34 input.tar.gz
[2026-02-13 17:04:11] -rw-r--r--. 1 boinc boinc         0 Feb 13 11:34 boinc_lockfile
[2026-02-13 17:04:11] -rw-r--r--. 1 boinc boinc      2547 Feb 13 11:35 pandaJob.out
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc       415 Feb 13 11:40 workernode_map.json
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc   1000247 Feb 13 11:40 agis_schedconf.cvmfs.json
[2026-02-13 17:04:11] drwx------. 5 boinc boinc      4096 Feb 13 11:40 pilot3
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc 254408717 Feb 13 17:01 HITS.48431113._012753.pool.root.1
[2026-02-13 17:04:11] -rw-r--r--. 1 boinc boinc       532 Feb 13 17:01 boinc_task_state.xml
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc      1017 Feb 13 17:02 memory_monitor_summary.json
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc   1513015 Feb 13 17:02 agis_ddmendpoints.agis.ALL.json
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc    563879 Feb 13 17:02 log.48431113._012753.job.log.tgz.1
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc      6326 Feb 13 17:03 heartbeat.json
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc        95 Feb 13 17:03 pilot_heartbeat.json
[2026-02-13 17:04:11] -rw-r--r--. 1 boinc boinc      8192 Feb 13 17:03 boinc_mmap_file
[2026-02-13 17:04:11] -rw-r--r--. 1 boinc boinc        28 Feb 13 17:03 wrapper_checkpoint.txt
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc      5067 Feb 13 17:04 pilotlog.txt
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc   2701862 Feb 13 17:04 log.48431113._012753.job.log.1
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc       357 Feb 13 17:04 output.list
[2026-02-13 17:04:11] -rw-r--r--. 1 boinc boinc       620 Feb 13 17:04 runtime_log
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc   3287040 Feb 13 17:04 result.tar.gz
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc       656 Feb 13 17:04 XjONDmU8hA9n9Rq4apOajLDm4fhM0noT9bVooX4SDmW4kKDmS0wTwm.diag
[2026-02-13 17:04:11] -rw-r--r--. 1 boinc boinc      8832 Feb 13 17:04 runtime_log.err
[2026-02-13 17:04:11] -rw-r--r--. 1 boinc boinc     20823 Feb 13 17:04 stderr.txt
[2026-02-13 17:04:11] HITS file was successfully produced:
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc 254408717 Feb 13 17:01 shared/HITS.pool.root.1
[2026-02-13 17:04:11]  *** Contents of shared directory: ***
[2026-02-13 17:04:11] total 887336
[2026-02-13 17:04:11] -rw-r--r--. 2 boinc boinc 650315536 Feb 13 11:34 ATLAS.root_0
[2026-02-13 17:04:11] -rw-r--r--. 2 boinc boinc     15845 Feb 13 11:34 start_atlas.sh
[2026-02-13 17:04:11] -rw-r--r--. 2 boinc boinc    597960 Feb 13 11:34 input.tar.gz
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc 254408717 Feb 13 17:01 HITS.pool.root.1
[2026-02-13 17:04:11] -rw-------. 1 boinc boinc   3287040 Feb 13 17:04 result.tar.gz
17:04:13 (8772): run_atlas exited; CPU time 73514.794485
17:04:13 (8772): called boinc_finish(0)

</stderr_txt>
]]>

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