Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:36:46 (3932418): wrapper (7.7.26015): starting
03:36:46 (3932418): wrapper: running run_atlas (--nthreads 3)
[2026-02-13 03:36:46] Arguments: --nthreads 3
[2026-02-13 03:36:46] Threads: 3
[2026-02-13 03:36:46] Checking for CVMFS
[2026-02-13 03:36:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-13 03:36:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-13 03:36:47] Running cvmfs_config stat atlas.cern.ch
[2026-02-13 03:36:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-13 03:36:47] 2.9.2.0 2664365 9704 82096 156178 1 49 20493202 36864000 0 130560 0 3437215 99.981 332498 5418 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-13 03:36:47] CVMFS is ok
[2026-02-13 03:36:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-13 03:36:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-13 03:36:47] Further information can be found at the LHC@home message board.
[2026-02-13 03:36:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-13 03:36:47] Checking for apptainer binary...
[2026-02-13 03:36:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-13 03:36:47] Running /usr/bin/apptainer --version
[2026-02-13 03:36:47] apptainer version 1.4.1-1.1
[2026-02-13 03:36:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-13 03:36:47] atlasA221b
[2026-02-13 03:36:47] apptainer works
[2026-02-13 03:36:47] Set ATHENA_PROC_NUMBER=3
[2026-02-13 03:36:47] Set ATHENA_CORE_NUMBER=3
[2026-02-13 03:36:47] Starting ATLAS job with PandaID=7013398960
[2026-02-13 03:36:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-13 05:59:21]  *** The last 200 lines of the pilot log: ***
[2026-02-13 05:59:21] 2026-02-13 04:58:40,874 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-13 05:59:21] 2026-02-13 04:58:40,874 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-13 05:59:21] 2026-02-13 04:58:40,874 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-13 05:59:21] 2026-02-13 04:58:40,874 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-13 05:59:21] 2026-02-13 04:58:40,874 | INFO     | job 7013398960 has completed (purged errors)
[2026-02-13 05:59:21] 2026-02-13 04:58:40,874 | INFO     | overall cleanup function is called
[2026-02-13 05:59:21] 2026-02-13 04:58:41,881 | INFO     | --- collectZombieJob: --- 10, [3940896]
[2026-02-13 05:59:21] 2026-02-13 04:58:41,881 | INFO     | zombie collector waiting for pid 3940896
[2026-02-13 05:59:21] 2026-02-13 04:58:41,881 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-13 05:59:21] 2026-02-13 04:58:41,881 | INFO     | collected zombie processes
[2026-02-13 05:59:21] 2026-02-13 04:58:41,882 | INFO     | will attempt to kill all subprocesses of pid=3940896
[2026-02-13 05:59:21] 2026-02-13 04:58:41,935 | INFO     | process IDs to be killed: [3940896] (in reverse order)
[2026-02-13 05:59:21] 2026-02-13 04:58:41,965 | WARNING  | found no corresponding commands to process id(s)
[2026-02-13 05:59:21] 2026-02-13 04:58:41,965 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-13 05:59:21] 2026-02-13 04:58:41,967 | INFO     | did not find any defunct processes belonging to 3940896
[2026-02-13 05:59:21] 2026-02-13 04:58:41,968 | INFO     | did not find any defunct processes belonging to 3940896
[2026-02-13 05:59:21] 2026-02-13 04:58:41,968 | INFO     | ready for new job
[2026-02-13 05:59:21] 2026-02-13 04:58:41,968 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-13 05:59:21] 2026-02-13 04:58:41,969 | INFO     | **************************************
[2026-02-13 05:59:21] 2026-02-13 04:58:41,969 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-13 05:59:21] 2026-02-13 04:58:41,969 | INFO     | **************************************
[2026-02-13 05:59:21] 2026-02-13 04:58:41,969 | INFO     | 
[2026-02-13 05:59:21] 2026-02-13 04:58:41,969 | INFO     | architecture information:
[2026-02-13 05:59:21] 2026-02-13 04:58:41,969 | INFO     | executing command: cat /etc/os-release
[2026-02-13 05:59:21] 2026-02-13 04:58:41,980 | INFO     | cat /etc/os-release:
[2026-02-13 05:59:21] NAME="CentOS Linux"
[2026-02-13 05:59:21] VERSION="7 (Core)"
[2026-02-13 05:59:21] ID="centos"
[2026-02-13 05:59:21] ID_LIKE="rhel fedora"
[2026-02-13 05:59:21] VERSION_ID="7"
[2026-02-13 05:59:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-13 05:59:21] ANSI_COLOR="0;31"
[2026-02-13 05:59:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-13 05:59:21] HOME_URL="https://www.centos.org/"
[2026-02-13 05:59:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-13 05:59:21] 
[2026-02-13 05:59:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-13 05:59:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-13 05:59:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-13 05:59:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-13 05:59:21] 
[2026-02-13 05:59:21] 2026-02-13 04:58:41,980 | INFO     | **************************************
[2026-02-13 05:59:21] 2026-02-13 04:58:42,483 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-13 05:59:21] 2026-02-13 04:58:42,497 | INFO     | sufficient remaining disk space (335267495936 B)
[2026-02-13 05:59:21] 2026-02-13 04:58:42,497 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-13 05:59:21] 2026-02-13 04:58:42,497 | INFO     | current server update state: UPDATING_FINAL
[2026-02-13 05:59:21] 2026-02-13 04:58:42,497 | INFO     | update_server=False
[2026-02-13 05:59:21] 2026-02-13 04:58:42,497 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-13 05:59:21] 2026-02-13 04:58:42,498 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-13 05:59:21] 2026-02-13 04:58:42,498 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-13 05:59:21] 2026-02-13 04:58:42,498 | INFO     | found 0 job(s) in 20 queues
[2026-02-13 05:59:21] 2026-02-13 04:58:42,498 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-13 05:59:21] 2026-02-13 04:58:42,498 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-13 05:59:21] 2026-02-13 04:58:42,498 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-13 05:59:21] 2026-02-13 04:58:43,175 | INFO     | all payload control threads have been joined
[2026-02-13 05:59:21] 2026-02-13 04:58:43,290 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-13 05:59:21] 2026-02-13 04:58:43,290 | INFO     | aborting loop
[2026-02-13 05:59:21] 2026-02-13 04:58:43,503 | INFO     | [job] retrieve thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:43,504 | INFO     | [job] queue monitor thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:43,561 | INFO     | [payload] failed_post thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:43,561 | INFO     | all job control threads have been joined
[2026-02-13 05:59:21] 2026-02-13 04:58:43,574 | INFO     | all data control threads have been joined
[2026-02-13 05:59:21] 2026-02-13 04:58:43,948 | INFO     | [payload] validate_pre thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:44,027 | INFO     | [job] create_data_payload thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:44,039 | INFO     | [job] validate thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:44,056 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-13 05:59:21] 2026-02-13 04:58:44,180 | INFO     | [payload] control thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:44,247 | INFO     | [data] copytool_in thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:44,296 | INFO     | [job] job monitor thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:44,305 | INFO     | [payload] execute_payloads thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:44,504 | INFO     | [data] copytool_out thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:44,567 | INFO     | [job] control thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:44,580 | INFO     | [data] control thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:44,934 | INFO     | [payload] validate_post thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:48,062 | INFO     | [data] queue_monitor thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:58:52,643 | INFO     | job.realtimelogging is not enabled
[2026-02-13 05:59:21] 2026-02-13 04:58:53,646 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-13 05:59:21] 2026-02-13 04:59:16,355 | INFO     | [monitor] cgroup control has ended
[2026-02-13 05:59:21] 2026-02-13 04:59:16,742 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140677768075072)>', '<ExcThread(monitor, started 140677140698880)>']
[2026-02-13 05:59:21] 2026-02-13 04:59:17,667 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-13 05:59:21] 2026-02-13 04:59:17,668 | INFO     | [monitor] control thread has ended
[2026-02-13 05:59:21] 2026-02-13 04:59:21,748 | INFO     | all workflow threads have been joined
[2026-02-13 05:59:21] 2026-02-13 04:59:21,748 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-13 05:59:21] 2026-02-13 04:59:21,749 | INFO     | traces error code: 0
[2026-02-13 05:59:21] 2026-02-13 04:59:21,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-13 05:59:21] 2026-02-13 04:59:21,798 [wrapper] ==== pilot stdout END ====
[2026-02-13 05:59:21] 2026-02-13 04:59:21,801 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-13 05:59:21] 2026-02-13 04:59:21,803 [wrapper] pilotpid: 3936465
[2026-02-13 05:59:21] 2026-02-13 04:59:21,806 [wrapper] Pilot exit status: 0
[2026-02-13 05:59:21] 2026-02-13 04:59:21,813 [wrapper] pandaids: 7013398960
[2026-02-13 05:59:21] 2026-02-13 04:59:21,833 [wrapper] cleanup supervisor_pilot 3946772 3936466
[2026-02-13 05:59:21] 2026-02-13 04:59:21,836 [wrapper] Test setup, not cleaning
[2026-02-13 05:59:21] 2026-02-13 04:59:21,838 [wrapper] apfmon messages muted
[2026-02-13 05:59:21] 2026-02-13 04:59:21,841 [wrapper] ==== wrapper stdout END ====
[2026-02-13 05:59:21] 2026-02-13 04:59:21,843 [wrapper] ==== wrapper stderr END ====
[2026-02-13 05:59:21]  *** Error codes and diagnostics ***
[2026-02-13 05:59:21]     "exeErrorCode": 0,
[2026-02-13 05:59:21]     "exeErrorDiag": "",
[2026-02-13 05:59:21]     "pilotErrorCode": 0,
[2026-02-13 05:59:21]     "pilotErrorDiag": "",
[2026-02-13 05:59:21]  *** Listing of results directory ***
[2026-02-13 05:59:21] total 947628
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc    584627 Feb 12 08:21 pilot3.tar.gz
[2026-02-13 05:59:21] -rwx------ 1 boinc boinc     36322 Feb 12 08:25 runpilot2-wrapper.sh
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc      5111 Feb 12 08:27 queuedata.json
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc       100 Feb 13 03:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-13 05:59:21] -rwxr-xr-x 1 boinc boinc      7986 Feb 13 03:36 run_atlas
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc       105 Feb 13 03:36 job.xml
[2026-02-13 05:59:21] -rw-r--r-- 2 boinc boinc 683423638 Feb 13 03:36 EVNT.48431094._000189.pool.root.1
[2026-02-13 05:59:21] -rw-r--r-- 2 boinc boinc    597960 Feb 13 03:36 input.tar.gz
[2026-02-13 05:59:21] drwxrwx--x 2 boinc boinc      4096 Feb 13 03:36 shared
[2026-02-13 05:59:21] -rw-r--r-- 2 boinc boinc     15845 Feb 13 03:36 start_atlas.sh
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc         0 Feb 13 03:36 boinc_setup_complete
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc      6199 Feb 13 03:36 init_data.xml
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc         0 Feb 13 03:36 boinc_lockfile
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc      2555 Feb 13 03:36 pandaJob.out
[2026-02-13 05:59:21] -rw------- 1 boinc boinc   1000262 Feb 13 03:36 agis_schedconf.cvmfs.json
[2026-02-13 05:59:21] -rw------- 1 boinc boinc   1512955 Feb 13 03:36 agis_ddmendpoints.agis.ALL.json
[2026-02-13 05:59:21] -rw------- 1 boinc boinc       430 Feb 13 03:37 workernode_map.json
[2026-02-13 05:59:21] drwx------ 5 boinc boinc      4096 Feb 13 03:37 pilot3
[2026-02-13 05:59:21] -rw------- 1 boinc boinc        95 Feb 13 05:57 pilot_heartbeat.json
[2026-02-13 05:59:21] -rw------- 1 boinc boinc 280014563 Feb 13 05:58 HITS.48431096._036334.pool.root.1
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc       530 Feb 13 05:58 boinc_task_state.xml
[2026-02-13 05:59:21] -rw------- 1 boinc boinc      1014 Feb 13 05:58 memory_monitor_summary.json
[2026-02-13 05:59:21] -rw------- 1 boinc boinc    294764 Feb 13 05:58 log.48431096._036334.job.log.tgz.1
[2026-02-13 05:59:21] -rw------- 1 boinc boinc      6315 Feb 13 05:58 heartbeat.json
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc      8192 Feb 13 05:59 boinc_mmap_file
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc        27 Feb 13 05:59 wrapper_checkpoint.txt
[2026-02-13 05:59:21] -rw------- 1 boinc boinc      4624 Feb 13 05:59 pilotlog.txt
[2026-02-13 05:59:21] -rw------- 1 boinc boinc   1211675 Feb 13 05:59 log.48431096._036334.job.log.1
[2026-02-13 05:59:21] -rw------- 1 boinc boinc       357 Feb 13 05:59 output.list
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc       620 Feb 13 05:59 runtime_log
[2026-02-13 05:59:21] -rw------- 1 boinc boinc   1525760 Feb 13 05:59 result.tar.gz
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc      8916 Feb 13 05:59 runtime_log.err
[2026-02-13 05:59:21] -rw------- 1 boinc boinc       661 Feb 13 05:59 1ZdLDmcFgA9n9Rq4apOajLDm4fhM0noT9bVooX4SDmRvkKDmDwj85n.diag
[2026-02-13 05:59:21] -rw-r--r-- 1 boinc boinc     11229 Feb 13 05:59 stderr.txt
[2026-02-13 05:59:21] HITS file was successfully produced:
[2026-02-13 05:59:21] -rw------- 1 boinc boinc 280014563 Feb 13 05:58 shared/HITS.pool.root.1
[2026-02-13 05:59:21]  *** Contents of shared directory: ***
[2026-02-13 05:59:21] total 942960
[2026-02-13 05:59:21] -rw-r--r-- 2 boinc boinc 683423638 Feb 13 03:36 ATLAS.root_0
[2026-02-13 05:59:21] -rw-r--r-- 2 boinc boinc    597960 Feb 13 03:36 input.tar.gz
[2026-02-13 05:59:21] -rw-r--r-- 2 boinc boinc     15845 Feb 13 03:36 start_atlas.sh
[2026-02-13 05:59:21] -rw------- 1 boinc boinc 280014563 Feb 13 05:58 HITS.pool.root.1
[2026-02-13 05:59:21] -rw------- 1 boinc boinc   1525760 Feb 13 05:59 result.tar.gz
05:59:44 (3932418): run_atlas exited; CPU time 24740.179036
05:59:44 (3932418): called boinc_finish(0)

</stderr_txt>
]]>

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