Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:28:45 (9938): wrapper (7.7.26015): starting
18:28:45 (9938): wrapper: running run_atlas (--nthreads 8)
[2026-02-12 18:28:45] Arguments: --nthreads 8
[2026-02-12 18:28:45] Threads: 8
[2026-02-12 18:28:45] Checking for CVMFS
[2026-02-12 18:28:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 18:28:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 18:28:45] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 18:28:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 18:28:45] 2.11.0.0 11534 178289 81628 156162 3 79 2178975 4096000 246 130560 2 8695205 99.600 9790517 442 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-12 18:28:45] CVMFS is ok
[2026-02-12 18:28:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 18:28:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 18:28:45] Further information can be found at the LHC@home message board.
[2026-02-12 18:28:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 18:28:45] Checking for apptainer binary...
[2026-02-12 18:28:45] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-12 18:28:45] apptainer is not installed, using version from CVMFS
[2026-02-12 18:28:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 18:28:45] WARNING: Environment variable TMPDIR already has value [/tmp/job_11090602/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node376
[2026-02-12 18:28:45] apptainer works
[2026-02-12 18:28:45] Set ATHENA_PROC_NUMBER=8
[2026-02-12 18:28:45] Set ATHENA_CORE_NUMBER=8
[2026-02-12 18:28:45] Starting ATLAS job with PandaID=7009227787
[2026-02-12 18:28:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11090602/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 19:34:08]  *** The last 200 lines of the pilot log: ***
[2026-02-12 19:34:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-12 19:34:08]  is_altstaged=None
[2026-02-12 19:34:08]  is_tar=False
[2026-02-12 19:34:08]  lfn=log.48431113._012117.job.log.tgz.1
[2026-02-12 19:34:08]  mtime=0
[2026-02-12 19:34:08]  protocol_id=None
[2026-02-12 19:34:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-12 19:34:08]  replicas=None
[2026-02-12 19:34:08]  scope=mc23_13p6TeV
[2026-02-12 19:34:08]  status=None
[2026-02-12 19:34:08]  status_code=0
[2026-02-12 19:34:08]  storage_token=
[2026-02-12 19:34:08]  surl=/tmp/job_11090602/atlas/pilot/slots/0/PanDA_Pilot-7009227787/log.48431113._012117.job.log.tgz.1
[2026-02-12 19:34:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cf/d9/log.48431113._012117.job.log.tgz.1
[2026-02-12 19:34:08]  workdir=None
[2026-02-12 19:34:08] ]
[2026-02-12 19:34:08] 2026-02-12 18:33:32,473 | INFO     | transferring file log.48431113._012117.job.log.tgz.1 from /tmp/job_11090602/atlas/pilot/slots/0/PanDA_Pilot-7009227787/log.48431113._012117.job.log.tgz.1 to /tmp/j
[2026-02-12 19:34:08] 2026-02-12 18:33:32,473 | INFO     | executing command: /usr/bin/env mv /tmp/job_11090602/atlas/pilot/slots/0/PanDA_Pilot-7009227787/log.48431113._012117.job.log.tgz.1 /tmp/job_11090602/atlas/pilot/sl
[2026-02-12 19:34:08] 2026-02-12 18:33:32,483 | INFO     | adding to output.list: log.48431113._012117.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cf/d9/log.48431113._012117.job.log.tg
[2026-02-12 19:34:08] 2026-02-12 18:33:32,484 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-12 19:34:08] 2026-02-12 18:33:32,484 | INFO     | summary of transferred files:
[2026-02-12 19:34:08] 2026-02-12 18:33:32,484 | INFO     |  -- lfn=log.48431113._012117.job.log.tgz.1, status_code=0, status=transferred
[2026-02-12 19:34:08] 2026-02-12 18:33:32,484 | INFO     | stage-out finished correctly
[2026-02-12 19:34:08] 2026-02-12 18:33:32,768 | INFO     | time since job start (3880s) is within the limit (349056.0s)
[2026-02-12 19:34:08] 2026-02-12 18:33:33,856 | WARNING  | process 27122 can no longer be monitored (due to stat problems) - aborting
[2026-02-12 19:34:08] 2026-02-12 18:33:33,856 | INFO     | using path: /tmp/job_11090602/atlas/pilot/slots/0/PanDA_Pilot-7009227787/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 19:34:08] 2026-02-12 18:33:33,957 | INFO     | number of running child processes to parent process 27122: 1
[2026-02-12 19:34:08] 2026-02-12 18:33:33,958 | INFO     | maximum number of monitored processes: 6
[2026-02-12 19:34:08] 2026-02-12 18:33:34,773 | INFO     | time since job start (3882s) is within the limit (349056.0s)
[2026-02-12 19:34:08] 2026-02-12 18:33:35,690 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-12 19:34:08] 2026-02-12 18:33:36,348 | INFO     | job 7009227787 has state=finished
[2026-02-12 19:34:08] 2026-02-12 18:33:36,348 | INFO     | preparing for final server update for job 7009227787 in state='finished'
[2026-02-12 19:34:08] 2026-02-12 18:33:36,348 | INFO     | reading metadata from: /tmp/job_11090602/atlas/pilot/slots/0/PanDA_Pilot-7009227787/jobReport.json
[2026-02-12 19:34:08] 2026-02-12 18:33:36,349 | INFO     | added worker_node to metadata from /tmp/job_11090602/atlas/pilot/slots/0/workernode_map.json
[2026-02-12 19:34:08] 2026-02-12 18:33:36,350 | INFO     | this job has now completed (state=finished)
[2026-02-12 19:34:08] 2026-02-12 18:33:36,350 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-12 19:34:08] 2026-02-12 18:33:36,350 | INFO     | log transfer has been attempted: DONE
[2026-02-12 19:34:08] 2026-02-12 18:33:36,350 | INFO     | job 7009227787 has finished - writing final server update
[2026-02-12 19:34:08] 2026-02-12 18:33:36,350 | INFO     | total number of processed events: 400 (read)
[2026-02-12 19:34:08] 2026-02-12 18:33:36,367 | INFO     | using path: /tmp/job_11090602/atlas/pilot/slots/0/PanDA_Pilot-7009227787/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 19:34:08] 2026-02-12 18:33:36,367 | INFO     | extracted standard info from prmon json
[2026-02-12 19:34:08] 2026-02-12 18:33:36,367 | INFO     | extracted standard memory fields from prmon json
[2026-02-12 19:34:08] 2026-02-12 18:33:36,367 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-12 19:34:08] 2026-02-12 18:33:36,367 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-12 19:34:08] 2026-02-12 18:33:36,367 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-12 19:34:08] 2026-02-12 18:33:36,368 | INFO     | fitting pss+swap vs Time
[2026-02-12 19:34:08] 2026-02-12 18:33:36,368 | INFO     | sum of square deviations: 57407588.0
[2026-02-12 19:34:08] 2026-02-12 18:33:36,368 | INFO     | sum of deviations: 713347786.0
[2026-02-12 19:34:08] 2026-02-12 18:33:36,368 | INFO     | mean x: 1770919361.0
[2026-02-12 19:34:08] 2026-02-12 18:33:36,368 | INFO     | mean y: 2562615.1754385964
[2026-02-12 19:34:08] 2026-02-12 18:33:36,368 | INFO     | intersect: -22002915220.85357
[2026-02-12 19:34:08] 2026-02-12 18:33:36,369 | INFO     | chi2: 0.0009504764376422973
[2026-02-12 19:34:08] 2026-02-12 18:33:36,369 | INFO     | current memory leak: 12.43 B/s (using 57 data points, chi2=0.00)
[2026-02-12 19:34:08] 2026-02-12 18:33:36,369 | INFO     | could have reported an average CPU frequency of 2427 MHz (6 samples)
[2026-02-12 19:34:08] 2026-02-12 18:33:36,369 | INFO     | ..............................
[2026-02-12 19:34:08] 2026-02-12 18:33:36,369 | INFO     | . Timing measurements:
[2026-02-12 19:34:08] 2026-02-12 18:33:36,369 | INFO     | . get job = 0 s
[2026-02-12 19:34:08] 2026-02-12 18:33:36,369 | INFO     | . initial setup = 2 s
[2026-02-12 19:34:08] 2026-02-12 18:33:36,369 | INFO     | . payload setup = 2 s
[2026-02-12 19:34:08] 2026-02-12 18:33:36,369 | INFO     | . stage-in = 0 s
[2026-02-12 19:34:08] 2026-02-12 18:33:36,369 | INFO     | . payload execution = 3862 s
[2026-02-12 19:34:08] 2026-02-12 18:33:36,369 | INFO     | . stage-out = 0 s
[2026-02-12 19:34:08] 2026-02-12 18:33:36,369 | INFO     | . log creation = 0 s
[2026-02-12 19:34:08] 2026-02-12 18:33:36,369 | INFO     | ..............................
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | 
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | job summary report
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | --------------------------------------------------
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | PanDA job id: 7009227787
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | task id: 48431113
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | errors: (none)
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | pilot state: finished 
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | transexitcode: 0
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | exeerrorcode: 0
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | exeerrordiag: 
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | exitcode: 0
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | exitmsg: OK
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | cpuconsumptiontime: 28563 s
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | nevents: 400
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | neventsw: 0
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | pid: 27122
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | pgrp: 27122
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | corecount: 8
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | event service: False
[2026-02-12 19:34:08] 2026-02-12 18:33:36,657 | INFO     | sizes: {0: 2282376, 11: 2282376, 3867: 2308327, 3869: 2317355, 3872: 2317411, 3873: 2317605}
[2026-02-12 19:34:08] 2026-02-12 18:33:36,658 | INFO     | --------------------------------------------------
[2026-02-12 19:34:08] 2026-02-12 18:33:36,658 | INFO     | 
[2026-02-12 19:34:08] 2026-02-12 18:33:36,658 | INFO     | executing command: ls -lF /tmp/job_11090602/atlas/pilot/slots/0
[2026-02-12 19:34:08] 2026-02-12 18:33:36,669 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,669 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,669 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,669 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,669 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | job 7009227787 has completed (purged errors)
[2026-02-12 19:34:08] 2026-02-12 18:33:36,670 | INFO     | overall cleanup function is called
[2026-02-12 19:34:08] 2026-02-12 18:33:37,676 | INFO     | --- collectZombieJob: --- 10, [27122]
[2026-02-12 19:34:08] 2026-02-12 18:33:37,676 | INFO     | zombie collector waiting for pid 27122
[2026-02-12 19:34:08] 2026-02-12 18:33:37,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 19:34:08] 2026-02-12 18:33:37,676 | INFO     | collected zombie processes
[2026-02-12 19:34:08] 2026-02-12 18:33:37,676 | INFO     | will attempt to kill all subprocesses of pid=27122
[2026-02-12 19:34:08] 2026-02-12 18:33:37,783 | INFO     | process IDs to be killed: [27122] (in reverse order)
[2026-02-12 19:34:08] 2026-02-12 18:33:37,825 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 19:34:08] 2026-02-12 18:33:37,825 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 19:34:08] 2026-02-12 18:33:37,829 | INFO     | did not find any defunct processes belonging to 27122
[2026-02-12 19:34:08] 2026-02-12 18:33:37,832 | INFO     | did not find any defunct processes belonging to 27122
[2026-02-12 19:34:08] 2026-02-12 18:33:37,832 | INFO     | ready for new job
[2026-02-12 19:34:08] 2026-02-12 18:33:37,832 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 19:34:08] 2026-02-12 18:33:37,832 | INFO     | **************************************
[2026-02-12 19:34:08] 2026-02-12 18:33:37,832 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 19:34:08] 2026-02-12 18:33:37,833 | INFO     | **************************************
[2026-02-12 19:34:08] 2026-02-12 18:33:37,833 | INFO     | 
[2026-02-12 19:34:08] 2026-02-12 18:33:37,846 | INFO     | architecture information:
[2026-02-12 19:34:08] 2026-02-12 18:33:37,846 | INFO     | executing command: cat /etc/os-release
[2026-02-12 19:34:08] 2026-02-12 18:33:37,854 | INFO     | cat /etc/os-release:
[2026-02-12 19:34:08] NAME="CentOS Linux"
[2026-02-12 19:34:08] VERSION="7 (Core)"
[2026-02-12 19:34:08] ID="centos"
[2026-02-12 19:34:08] ID_LIKE="rhel fedora"
[2026-02-12 19:34:08] VERSION_ID="7"
[2026-02-12 19:34:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 19:34:08] ANSI_COLOR="0;31"
[2026-02-12 19:34:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 19:34:08] HOME_URL="https://www.centos.org/"
[2026-02-12 19:34:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 19:34:08] 
[2026-02-12 19:34:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 19:34:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 19:34:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 19:34:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 19:34:08] 
[2026-02-12 19:34:08] 2026-02-12 18:33:37,854 | INFO     | **************************************
[2026-02-12 19:34:08] 2026-02-12 18:33:38,356 | INFO     | executing command: df -mP /tmp/job_11090602/atlas/pilot/slots/0
[2026-02-12 19:34:08] 2026-02-12 18:33:38,365 | INFO     | sufficient remaining disk space (219642068992 B)
[2026-02-12 19:34:08] 2026-02-12 18:33:38,365 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 19:34:08] 2026-02-12 18:33:38,365 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 19:34:08] 2026-02-12 18:33:38,365 | INFO     | update_server=False
[2026-02-12 19:34:08] 2026-02-12 18:33:38,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 19:34:08] 2026-02-12 18:33:38,366 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 19:34:08] 2026-02-12 18:33:38,366 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 19:34:08] 2026-02-12 18:33:38,366 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 19:34:08] 2026-02-12 18:33:38,366 | INFO     | aborting loop
[2026-02-12 19:34:08] 2026-02-12 18:33:38,649 | INFO     | all job control threads have been joined
[2026-02-12 19:34:08] 2026-02-12 18:33:38,686 | INFO     | all data control threads have been joined
[2026-02-12 19:34:08] 2026-02-12 18:33:38,992 | INFO     | all payload control threads have been joined
[2026-02-12 19:34:08] 2026-02-12 18:33:39,371 | INFO     | [job] retrieve thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:39,372 | INFO     | [job] queue monitor thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:39,372 | INFO     | [job] job monitor thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:39,438 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:39,654 | INFO     | [job] control thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:39,662 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:39,692 | INFO     | [data] control thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:39,826 | INFO     | [payload] validate_post thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:39,963 | INFO     | [payload] failed_post thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:39,997 | INFO     | [payload] control thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:40,271 | INFO     | [data] copytool_in thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:40,371 | INFO     | [data] copytool_out thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:40,478 | INFO     | [job] validate thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:40,773 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:41,742 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 19:34:08] 2026-02-12 18:33:45,748 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:49,147 | INFO     | job.realtimelogging is not enabled
[2026-02-12 19:34:08] 2026-02-12 18:33:50,152 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 19:34:08] 2026-02-12 18:33:58,186 | INFO     | [monitor] cgroup control has ended
[2026-02-12 19:34:08] 2026-02-12 18:33:58,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-02-12 19:34:08] 2026-02-12 18:34:03,666 | INFO     | all workflow threads have been joined
[2026-02-12 19:34:08] 2026-02-12 18:34:03,666 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 19:34:08] 2026-02-12 18:34:03,666 | INFO     | traces error code: 0
[2026-02-12 19:34:08] 2026-02-12 18:34:03,667 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 19:34:08] 2026-02-12 18:34:07,966 | INFO     | PID=21381 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-12 19:34:08] 2026-02-12 18:34:07,966 | INFO     | .. there are 6 such processes running
[2026-02-12 19:34:08] 2026-02-12 18:34:07,966 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 19:34:08] 2026-02-12 18:34:07,966 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 19:34:08] 2026-02-12 18:34:07,966 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 19:34:08] 2026-02-12 18:34:07,967 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 19:34:08] 2026-02-12 18:34:07,967 | INFO     | [monitor] control thread has ended
[2026-02-12 19:34:08] 2026-02-12 18:34:08,030 [wrapper] ==== pilot stdout END ====
[2026-02-12 19:34:08] 2026-02-12 18:34:08,031 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 19:34:08] 2026-02-12 18:34:08,032 [wrapper] pilotpid: 21381
[2026-02-12 19:34:08] 2026-02-12 18:34:08,033 [wrapper] Pilot exit status: 0
[2026-02-12 19:34:08] 2026-02-12 18:34:08,038 [wrapper] pandaids: 7009227787
[2026-02-12 19:34:08] 2026-02-12 18:34:08,060 [wrapper] cleanup supervisor_pilot 30193 21382
[2026-02-12 19:34:08] 2026-02-12 18:34:08,062 [wrapper] Test setup, not cleaning
[2026-02-12 19:34:08] 2026-02-12 18:34:08,063 [wrapper] apfmon messages muted
[2026-02-12 19:34:08] 2026-02-12 18:34:08,064 [wrapper] ==== wrapper stdout END ====
[2026-02-12 19:34:08] 2026-02-12 18:34:08,065 [wrapper] ==== wrapper stderr END ====
[2026-02-12 19:34:08]  *** Error codes and diagnostics ***
[2026-02-12 19:34:08]     "exeErrorCode": 0,
[2026-02-12 19:34:08]     "exeErrorDiag": "",
[2026-02-12 19:34:08]     "pilotErrorCode": 0,
[2026-02-12 19:34:08]     "pilotErrorDiag": "",
[2026-02-12 19:34:08]  *** Listing of results directory ***
[2026-02-12 19:34:08] total 890248
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user    584627 Feb 12 06:11 pilot3.tar.gz
[2026-02-12 19:34:08] -rwx------ 1 mf493845 unix-user     36322 Feb 12 06:14 runpilot2-wrapper.sh
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user      5111 Feb 12 06:16 queuedata.json
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user       100 Feb 12 16:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 19:34:08] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb 12 16:15 run_atlas
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user       105 Feb 12 16:15 job.xml
[2026-02-12 19:34:08] -rw-r--r-- 2 mf493845 unix-user 651656837 Feb 12 18:28 EVNT.48431111._000234.pool.root.1
[2026-02-12 19:34:08] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 12 18:28 start_atlas.sh
[2026-02-12 19:34:08] drwxrwx--x 2 mf493845 unix-user       100 Feb 12 18:28 shared
[2026-02-12 19:34:08] -rw-r--r-- 2 mf493845 unix-user    597960 Feb 12 18:28 input.tar.gz
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user      6391 Feb 12 18:28 init_data.xml
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user         0 Feb 12 18:28 boinc_setup_complete
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user      8192 Feb 12 18:28 boinc_mmap_file
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user         0 Feb 12 18:28 boinc_lockfile
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user      2546 Feb 12 18:28 pandaJob.out
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user    999474 Feb 12 18:28 agis_schedconf.cvmfs.json
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user   1512955 Feb 12 18:28 agis_ddmendpoints.agis.ALL.json
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user       415 Feb 12 18:28 workernode_map.json
[2026-02-12 19:34:08] drwx------ 5 mf493845 unix-user       440 Feb 12 18:28 pilot3
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user 254223292 Feb 12 19:33 HITS.48431113._012117.pool.root.1
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user      1014 Feb 12 19:33 memory_monitor_summary.json
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user    323383 Feb 12 19:33 log.48431113._012117.job.log.tgz.1
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user      6306 Feb 12 19:33 heartbeat.json
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user        95 Feb 12 19:34 pilot_heartbeat.json
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user       820 Feb 12 19:34 pilotlog.txt
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user    594814 Feb 12 19:34 log.48431113._012117.job.log.1
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user       357 Feb 12 19:34 output.list
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user       620 Feb 12 19:34 runtime_log
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user    931840 Feb 12 19:34 result.tar.gz
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user      9219 Feb 12 19:34 runtime_log.err
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user       643 Feb 12 19:34 kioMDmLDeA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmzilKDmeEC2gn.diag
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user     21940 Feb 12 19:34 stderr.txt
[2026-02-12 19:34:08] HITS file was successfully produced:
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user 254223292 Feb 12 19:33 shared/HITS.pool.root.1
[2026-02-12 19:34:08]  *** Contents of shared directory: ***
[2026-02-12 19:34:08] total 886164
[2026-02-12 19:34:08] -rw-r--r-- 2 mf493845 unix-user 651656837 Feb 12 18:28 ATLAS.root_0
[2026-02-12 19:34:08] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 12 18:28 start_atlas.sh
[2026-02-12 19:34:08] -rw-r--r-- 2 mf493845 unix-user    597960 Feb 12 18:28 input.tar.gz
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user 254223292 Feb 12 19:33 HITS.pool.root.1
[2026-02-12 19:34:08] -rw------- 1 mf493845 unix-user    931840 Feb 12 19:34 result.tar.gz
19:34:09 (9938): run_atlas exited; CPU time 28619.932058
19:34:09 (9938): called boinc_finish(0)

</stderr_txt>
]]>

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