Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:57:19 (4042738): wrapper (7.7.26015): starting
06:57:19 (4042738): wrapper: running run_atlas (--nthreads 8)
[2026-02-12 06:57:19] Arguments: --nthreads 8
[2026-02-12 06:57:19] Threads: 8
[2026-02-12 06:57:19] Checking for CVMFS
[2026-02-12 06:57:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 06:57:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 06:57:20] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 06:57:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 06:57:21] 2.13.3.0 11235 140643 301132 156154 2 651 23372631 32935937 45391 16776704 0 1072042385 99.561 1225634210 24744 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-12 06:57:21] CVMFS is ok
[2026-02-12 06:57:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 06:57:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 06:57:21] Further information can be found at the LHC@home message board.
[2026-02-12 06:57:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 06:57:21] Checking for apptainer binary...
[2026-02-12 06:57:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 06:57:21] Running /usr/bin/apptainer --version
[2026-02-12 06:57:21] apptainer version 1.4.5-2.el9
[2026-02-12 06:57:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 06:57:21] c7-2-37.aglt2.org
[2026-02-12 06:57:21] apptainer works
[2026-02-12 06:57:21] Set ATHENA_PROC_NUMBER=8
[2026-02-12 06:57:21] Set ATHENA_CORE_NUMBER=8
[2026-02-12 06:57:21] Starting ATLAS job with PandaID=7009001407
[2026-02-12 06:57:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:00:13 (4042738): BOINC client no longer exists - exiting
07:00:13 (4042738): timer handler: client dead, exiting
07:11:06 (11658): wrapper (7.7.26015): starting
07:11:06 (11658): wrapper: running run_atlas (--nthreads 8)
[2026-02-12 07:11:06] Arguments: --nthreads 8
[2026-02-12 07:11:06] Threads: 8
[2026-02-12 07:11:06] This job has been restarted, cleaning up previous attempt
[2026-02-12 07:11:06] Checking for CVMFS
[2026-02-12 07:11:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 07:11:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 07:11:07] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 07:11:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 07:11:07] 2.13.3.0 11235 140657 298984 156154 0 656 23825712 32935937 44552 16776704 0 1072282073 99.562 1225776540 24745 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-12 07:11:07] CVMFS is ok
[2026-02-12 07:11:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 07:11:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 07:11:07] Further information can be found at the LHC@home message board.
[2026-02-12 07:11:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 07:11:07] Checking for apptainer binary...
[2026-02-12 07:11:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 07:11:07] Running /usr/bin/apptainer --version
[2026-02-12 07:11:07] apptainer version 1.4.5-2.el9
[2026-02-12 07:11:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 07:11:08] c7-2-37.aglt2.org
[2026-02-12 07:11:08] apptainer works
[2026-02-12 07:11:08] Set ATHENA_PROC_NUMBER=8
[2026-02-12 07:11:08] Set ATHENA_CORE_NUMBER=8
[2026-02-12 07:11:08] Starting ATLAS job with PandaID=7009001407
[2026-02-12 07:11:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 12:23:11]  *** The last 200 lines of the pilot log: ***
[2026-02-12 12:23:11] 2026-02-12 17:22:25,856 | INFO     | mean y: 2537516.8918032786
[2026-02-12 12:23:11] 2026-02-12 17:22:25,857 | INFO     | intersect: -13564503739.576323
[2026-02-12 12:23:11] 2026-02-12 17:22:25,857 | INFO     | chi2: 1.5471761051437434
[2026-02-12 12:23:11] 2026-02-12 17:22:25,857 | INFO     | sum of square deviations: 8372244708.34665
[2026-02-12 12:23:11] 2026-02-12 17:22:25,863 | INFO     | sum of deviations: 65882070029.960045
[2026-02-12 12:23:11] 2026-02-12 17:22:25,864 | INFO     | mean x: 1770907441.5466666
[2026-02-12 12:23:11] 2026-02-12 17:22:25,864 | INFO     | mean y: 2536972.61
[2026-02-12 12:23:11] 2026-02-12 17:22:25,864 | INFO     | intersect: -13932919066.34697
[2026-02-12 12:23:11] 2026-02-12 17:22:25,868 | INFO     | chi2: 1.547473283442727
[2026-02-12 12:23:11] 2026-02-12 17:22:25,868 | INFO     | current chi2=1.547473283442727 (change=-0.01920778752952362 %)
[2026-02-12 12:23:11] 2026-02-12 17:22:25,868 | INFO     | right removable region: 299
[2026-02-12 12:23:11] 2026-02-12 17:22:25,868 | INFO     | sum of square deviations: 8372236168.34665
[2026-02-12 12:23:11] 2026-02-12 17:22:25,870 | INFO     | sum of deviations: 15474960207.253334
[2026-02-12 12:23:11] 2026-02-12 17:22:25,871 | INFO     | mean x: 1770907746.5466666
[2026-02-12 12:23:11] 2026-02-12 17:22:25,871 | INFO     | mean y: 2555998.803333333
[2026-02-12 12:23:11] 2026-02-12 17:22:25,871 | INFO     | intersect: -3270730415.6598444
[2026-02-12 12:23:11] 2026-02-12 17:22:25,871 | INFO     | chi2: 0.006779127807810638
[2026-02-12 12:23:11] 2026-02-12 17:22:25,871 | INFO     | current chi2=0.006779127807810638 (change=99.56183864362481 %)
[2026-02-12 12:23:11] 2026-02-12 17:22:25,874 | INFO     | sum of square deviations: 7960559063.335601
[2026-02-12 12:23:11] 2026-02-12 17:22:25,876 | INFO     | sum of deviations: 11841764334.349154
[2026-02-12 12:23:11] 2026-02-12 17:22:25,876 | INFO     | mean x: 1770907899.0474577
[2026-02-12 12:23:11] 2026-02-12 17:22:25,877 | INFO     | mean y: 2557343.3322033896
[2026-02-12 12:23:11] 2026-02-12 17:22:25,877 | INFO     | intersect: -2631764421.1960196
[2026-02-12 12:23:11] 2026-02-12 17:22:25,877 | INFO     | chi2: 0.0034490106157108033
[2026-02-12 12:23:11] 2026-02-12 17:22:25,877 | INFO     | current chi2=0.0034490106157108033 (change=49.12309203350625 %)
[2026-02-12 12:23:11] 2026-02-12 17:22:25,877 | INFO     | sum of square deviations: 7562603145.824191
[2026-02-12 12:23:11] 2026-02-12 17:22:25,883 | INFO     | sum of deviations: 9488205495.944826
[2026-02-12 12:23:11] 2026-02-12 17:22:25,884 | INFO     | mean x: 1770908051.548276
[2026-02-12 12:23:11] 2026-02-12 17:22:25,884 | INFO     | mean y: 2558244.2896551723
[2026-02-12 12:23:11] 2026-02-12 17:22:25,884 | INFO     | intersect: -2219261304.28618
[2026-02-12 12:23:11] 2026-02-12 17:22:25,884 | INFO     | chi2: 0.0021510804471919923
[2026-02-12 12:23:11] 2026-02-12 17:22:25,884 | INFO     | current chi2=0.0021510804471919923 (change=37.631956324127515 %)
[2026-02-12 12:23:11] 2026-02-12 17:22:25,885 | INFO     | sum of square deviations: 7178135853.312307
[2026-02-12 12:23:11] 2026-02-12 17:22:25,891 | INFO     | sum of deviations: 7805972015.329824
[2026-02-12 12:23:11] 2026-02-12 17:22:25,891 | INFO     | mean x: 1770908204.0491228
[2026-02-12 12:23:11] 2026-02-12 17:22:25,891 | INFO     | mean y: 2558911.1192982458
[2026-02-12 12:23:11] 2026-02-12 17:22:25,891 | INFO     | intersect: -1923241904.7215734
[2026-02-12 12:23:11] 2026-02-12 17:22:25,892 | INFO     | chi2: 0.0015359690183565121
[2026-02-12 12:23:11] 2026-02-12 17:22:25,892 | INFO     | current chi2=0.0015359690183565121 (change=28.595463718636978 %)
[2026-02-12 12:23:11] 2026-02-12 17:22:25,905 | INFO     | sum of square deviations: 6806924623.299972
[2026-02-12 12:23:11] 2026-02-12 17:22:25,907 | INFO     | sum of deviations: 6805732715.749999
[2026-02-12 12:23:11] 2026-02-12 17:22:25,907 | INFO     | mean x: 1770908356.55
[2026-02-12 12:23:11] 2026-02-12 17:22:25,907 | INFO     | mean y: 2559320.9821428573
[2026-02-12 12:23:11] 2026-02-12 17:22:25,907 | INFO     | intersect: -1768038945.5995831
[2026-02-12 12:23:11] 2026-02-12 17:22:25,907 | INFO     | chi2: 0.0013452354548739729
[2026-02-12 12:23:11] 2026-02-12 17:22:25,907 | INFO     | current chi2=0.0013452354548739729 (change=12.417800177156197 %)
[2026-02-12 12:23:11] 2026-02-12 17:22:25,908 | INFO     | left removable region: 50
[2026-02-12 12:23:11] 2026-02-12 17:22:25,908 | INFO     | sum of square deviations: 4787112387.212886
[2026-02-12 12:23:11] 2026-02-12 17:22:25,944 | INFO     | sum of deviations: 5283439559.598394
[2026-02-12 12:23:11] 2026-02-12 17:22:25,944 | INFO     | mean x: 1770908936.0562248
[2026-02-12 12:23:11] 2026-02-12 17:22:25,944 | INFO     | mean y: 2559512.7429718873
[2026-02-12 12:23:11] 2026-02-12 17:22:25,944 | INFO     | intersect: -1951957025.076025
[2026-02-12 12:23:11] 2026-02-12 17:22:25,945 | INFO     | chi2: 0.001097842528180208
[2026-02-12 12:23:11] 2026-02-12 17:22:25,945 | INFO     | current memory leak: 1.10 B/s (using 249 data points, chi2=0.00)
[2026-02-12 12:23:11] 2026-02-12 17:22:25,945 | INFO     | could have reported an average CPU frequency of 3292 MHz (14 samples)
[2026-02-12 12:23:11] 2026-02-12 17:22:25,945 | INFO     | ..............................
[2026-02-12 12:23:11] 2026-02-12 17:22:25,978 | INFO     | . Timing measurements:
[2026-02-12 12:23:11] 2026-02-12 17:22:25,978 | INFO     | . get job = 0 s
[2026-02-12 12:23:11] 2026-02-12 17:22:25,978 | INFO     | . initial setup = 1 s
[2026-02-12 12:23:11] 2026-02-12 17:22:25,978 | INFO     | . payload setup = 12 s
[2026-02-12 12:23:11] 2026-02-12 17:22:25,978 | INFO     | . stage-in = 0 s
[2026-02-12 12:23:11] 2026-02-12 17:22:25,978 | INFO     | . payload execution = 18615 s
[2026-02-12 12:23:11] 2026-02-12 17:22:25,978 | INFO     | . stage-out = 6 s
[2026-02-12 12:23:11] 2026-02-12 17:22:25,978 | INFO     | . log creation = 0 s
[2026-02-12 12:23:11] 2026-02-12 17:22:25,978 | INFO     | ..............................
[2026-02-12 12:23:11] 2026-02-12 17:22:26,245 | INFO     | 
[2026-02-12 12:23:11] 2026-02-12 17:22:26,245 | INFO     | job summary report
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | --------------------------------------------------
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | PanDA job id: 7009001407
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | task id: 48431113
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | errors: (none)
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | pilot state: finished 
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | transexitcode: 0
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | exeerrorcode: 0
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | exeerrordiag: 
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | exitcode: 0
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | exitmsg: OK
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | cpuconsumptiontime: 46521 s
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | nevents: 400
[2026-02-12 12:23:11] 2026-02-12 17:22:26,249 | INFO     | neventsw: 0
[2026-02-12 12:23:11] 2026-02-12 17:22:26,250 | INFO     | pid: 60491
[2026-02-12 12:23:11] 2026-02-12 17:22:26,250 | INFO     | pgrp: 60491
[2026-02-12 12:23:11] 2026-02-12 17:22:26,250 | INFO     | corecount: 8
[2026-02-12 12:23:11] 2026-02-12 17:22:26,250 | INFO     | event service: False
[2026-02-12 12:23:11] 2026-02-12 17:22:26,250 | INFO     | sizes: {0: 2281817, 1: 2282278, 12: 2282278, 18632: 2314777, 18640: 2323775, 18644: 2323831, 18647: 2324153}
[2026-02-12 12:23:11] 2026-02-12 17:22:26,250 | INFO     | --------------------------------------------------
[2026-02-12 12:23:11] 2026-02-12 17:22:26,250 | INFO     | 
[2026-02-12 12:23:11] 2026-02-12 17:22:26,250 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-02-12 12:23:11] 2026-02-12 17:22:26,390 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,390 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,390 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,390 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,391 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,391 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,391 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,391 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,391 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,391 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,391 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,391 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,391 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,391 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,391 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,391 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,392 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,392 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 12:23:11] 2026-02-12 17:22:26,392 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,392 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 12:23:11] 2026-02-12 17:22:26,392 | INFO     | job 7009001407 has completed (purged errors)
[2026-02-12 12:23:11] 2026-02-12 17:22:26,392 | INFO     | overall cleanup function is called
[2026-02-12 12:23:11] 2026-02-12 17:22:27,404 | INFO     | --- collectZombieJob: --- 10, [60491]
[2026-02-12 12:23:11] 2026-02-12 17:22:27,404 | INFO     | zombie collector waiting for pid 60491
[2026-02-12 12:23:11] 2026-02-12 17:22:27,404 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 12:23:11] 2026-02-12 17:22:27,404 | INFO     | collected zombie processes
[2026-02-12 12:23:11] 2026-02-12 17:22:27,404 | INFO     | will attempt to kill all subprocesses of pid=60491
[2026-02-12 12:23:11] 2026-02-12 17:22:30,791 | INFO     | process IDs to be killed: [60491] (in reverse order)
[2026-02-12 12:23:11] 2026-02-12 17:22:31,185 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 12:23:11] 2026-02-12 17:22:31,185 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 12:23:11] 2026-02-12 17:22:31,216 | INFO     | did not find any defunct processes belonging to 60491
[2026-02-12 12:23:11] 2026-02-12 17:22:31,254 | INFO     | did not find any defunct processes belonging to 60491
[2026-02-12 12:23:11] 2026-02-12 17:22:31,255 | INFO     | ready for new job
[2026-02-12 12:23:11] 2026-02-12 17:22:31,255 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 12:23:11] 2026-02-12 17:22:31,257 | INFO     | **************************************
[2026-02-12 12:23:11] 2026-02-12 17:22:31,257 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 12:23:11] 2026-02-12 17:22:31,257 | INFO     | **************************************
[2026-02-12 12:23:11] 2026-02-12 17:22:31,257 | INFO     | 
[2026-02-12 12:23:11] 2026-02-12 17:22:31,262 | INFO     | architecture information:
[2026-02-12 12:23:11] 2026-02-12 17:22:31,263 | INFO     | executing command: cat /etc/os-release
[2026-02-12 12:23:11] 2026-02-12 17:22:31,320 | INFO     | cat /etc/os-release:
[2026-02-12 12:23:11] NAME="CentOS Linux"
[2026-02-12 12:23:11] VERSION="7 (Core)"
[2026-02-12 12:23:11] ID="centos"
[2026-02-12 12:23:11] ID_LIKE="rhel fedora"
[2026-02-12 12:23:11] VERSION_ID="7"
[2026-02-12 12:23:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 12:23:11] ANSI_COLOR="0;31"
[2026-02-12 12:23:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 12:23:11] HOME_URL="https://www.centos.org/"
[2026-02-12 12:23:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 12:23:11] 
[2026-02-12 12:23:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 12:23:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 12:23:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 12:23:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 12:23:11] 
[2026-02-12 12:23:11] 2026-02-12 17:22:31,320 | INFO     | **************************************
[2026-02-12 12:23:11] 2026-02-12 17:22:31,824 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-02-12 12:23:11] 2026-02-12 17:22:31,934 | INFO     | sufficient remaining disk space (68569530368 B)
[2026-02-12 12:23:11] 2026-02-12 17:22:31,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 12:23:11] 2026-02-12 17:22:31,934 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 12:23:11] 2026-02-12 17:22:31,934 | INFO     | update_server=False
[2026-02-12 12:23:11] 2026-02-12 17:22:31,935 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 12:23:11] 2026-02-12 17:22:31,936 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 12:23:11] 2026-02-12 17:22:31,936 | INFO     | aborting loop
[2026-02-12 12:23:11] 2026-02-12 17:22:31,936 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 12:23:11] 2026-02-12 17:22:32,064 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 12:23:11] 2026-02-12 17:22:32,229 | INFO     | all data control threads have been joined
[2026-02-12 12:23:11] 2026-02-12 17:22:32,270 | INFO     | all payload control threads have been joined
[2026-02-12 12:23:11] 2026-02-12 17:22:32,942 | INFO     | [job] job monitor thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:32,942 | INFO     | [job] queue monitor thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:32,943 | INFO     | [job] retrieve thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:32,976 | INFO     | all job control threads have been joined
[2026-02-12 12:23:11] 2026-02-12 17:22:33,034 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:33,095 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:33,234 | INFO     | [data] control thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:33,277 | INFO     | [payload] control thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:33,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 12:23:11] 2026-02-12 17:22:33,885 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:33,965 | INFO     | [payload] validate_post thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:33,982 | INFO     | [job] control thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:34,069 | INFO     | [data] copytool_out thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:34,109 | INFO     | [data] copytool_in thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:34,248 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:34,339 | INFO     | [payload] failed_post thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:34,405 | INFO     | [job] validate thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:37,670 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 12:23:11] 2026-02-12 17:22:59,481 | INFO     | PID=35283 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-12 12:23:11] 2026-02-12 17:22:59,481 | INFO     | .. there are 63 such processes running
[2026-02-12 12:23:11] 2026-02-12 17:22:59,481 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 12:23:11] 2026-02-12 17:22:59,482 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 12:23:11] 2026-02-12 17:22:59,482 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 12:23:11] 2026-02-12 17:23:00,585 | INFO     | [monitor] cgroup control has ended
[2026-02-12 12:23:11] 2026-02-12 17:23:02,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139854109239104)>', '<ExcThread(monitor, started 139853379393280)>']
[2026-02-12 12:23:11] 2026-02-12 17:23:02,515 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 12:23:11] 2026-02-12 17:23:02,515 | INFO     | [monitor] control thread has ended
[2026-02-12 12:23:11] 2026-02-12 17:23:07,105 | INFO     | all workflow threads have been joined
[2026-02-12 12:23:11] 2026-02-12 17:23:07,105 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 12:23:11] 2026-02-12 17:23:07,105 | INFO     | traces error code: 0
[2026-02-12 12:23:11] 2026-02-12 17:23:07,105 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 12:23:11] 2026-02-12 17:23:10,164 [wrapper] ==== pilot stdout END ====
[2026-02-12 12:23:11] 2026-02-12 17:23:10,186 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 12:23:11] 2026-02-12 17:23:10,212 [wrapper] pilotpid: 35283
[2026-02-12 12:23:11] 2026-02-12 17:23:10,228 [wrapper] Pilot exit status: 0
[2026-02-12 12:23:11] 2026-02-12 17:23:10,312 [wrapper] pandaids: 7009001407 7009001407
[2026-02-12 12:23:11] 2026-02-12 17:23:10,666 [wrapper] cleanup supervisor_pilot 2113907 35285
[2026-02-12 12:23:11] 2026-02-12 17:23:10,680 [wrapper] Test setup, not cleaning
[2026-02-12 12:23:11] 2026-02-12 17:23:10,683 [wrapper] apfmon messages muted
[2026-02-12 12:23:11] 2026-02-12 17:23:10,687 [wrapper] ==== wrapper stdout END ====
[2026-02-12 12:23:11] 2026-02-12 17:23:10,692 [wrapper] ==== wrapper stderr END ====
[2026-02-12 12:23:11]  *** Error codes and diagnostics ***
[2026-02-12 12:23:11]     "exeErrorCode": 0,
[2026-02-12 12:23:11]     "exeErrorDiag": "",
[2026-02-12 12:23:11]     "pilotErrorCode": 0,
[2026-02-12 12:23:11]     "pilotErrorDiag": "",
[2026-02-12 12:23:11]  *** Listing of results directory ***
[2026-02-12 12:23:11] total 1548504
[2026-02-12 12:23:11] drwx------. 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-02-12 12:23:11] -rw-r--r--. 1 boincer umatlas    584627 Feb 11 19:45 pilot3.tar.gz
[2026-02-12 12:23:11] -rwx------. 1 boincer umatlas     36322 Feb 11 19:50 runpilot2-wrapper.sh
[2026-02-12 12:23:11] -rw-r--r--. 1 boincer umatlas      5111 Feb 11 19:53 queuedata.json
[2026-02-12 12:23:11] -rw-r--r--. 1 boincer umatlas       100 Feb 12 06:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 12:23:11] -rwxr-xr-x. 1 boincer umatlas      7986 Feb 12 06:57 run_atlas
[2026-02-12 12:23:11] -rw-r--r--. 1 boincer umatlas       105 Feb 12 06:57 job.xml
[2026-02-12 12:23:11] -rw-r--r--. 3 boincer umatlas 656018568 Feb 12 06:57 EVNT.48431111._000224.pool.root.1
[2026-02-12 12:23:11] -rw-r--r--. 3 boincer umatlas 656018568 Feb 12 06:57 ATLAS.root_0
[2026-02-12 12:23:11] -rw-r--r--. 2 boincer umatlas     15845 Feb 12 06:57 start_atlas.sh
[2026-02-12 12:23:11] drwxrwx--x. 2 boincer umatlas      4096 Feb 12 06:57 shared
[2026-02-12 12:23:11] -rw-r--r--. 2 boincer umatlas    597953 Feb 12 06:57 input.tar.gz
[2026-02-12 12:23:11] -rw-r--r--. 1 boincer umatlas         0 Feb 12 06:57 boinc_lockfile
[2026-02-12 12:23:11] -rw-r--r--. 1 boincer umatlas      2546 Feb 12 07:11 pandaJob.out
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas        57 Feb 12 07:11 setup.sh.local
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas   1000167 Feb 12 07:11 agis_schedconf.cvmfs.json
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas       429 Feb 12 07:11 workernode_map.json
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas 264250976 Feb 12 12:21 HITS.48431113._011606.pool.root.1
[2026-02-12 12:23:11] -rw-r--r--. 1 boincer umatlas       531 Feb 12 12:21 boinc_task_state.xml
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas      1050 Feb 12 12:22 memory_monitor_summary.json
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas   1512955 Feb 12 12:22 agis_ddmendpoints.agis.ALL.json
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas        96 Feb 12 12:22 pilot_heartbeat.json
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas    510106 Feb 12 12:22 log.48431113._011606.job.log.tgz.1
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas      6355 Feb 12 12:22 heartbeat.json
[2026-02-12 12:23:11] -rw-r--r--. 1 boincer umatlas      6943 Feb 12 12:22 init_data.xml
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas      4818 Feb 12 12:23 pilotlog.txt
[2026-02-12 12:23:11] -rw-r--r--. 1 boincer umatlas      8192 Feb 12 12:23 boinc_mmap_file
[2026-02-12 12:23:11] -rw-r--r--. 1 boincer umatlas        28 Feb 12 12:23 wrapper_checkpoint.txt
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas   2208917 Feb 12 12:23 log.48431113._011606.job.log.1
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas       357 Feb 12 12:23 output.list
[2026-02-12 12:23:11] -rw-r--r--. 1 boincer umatlas       620 Feb 12 12:23 runtime_log
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas   2734080 Feb 12 12:23 result.tar.gz
[2026-02-12 12:23:11] -rw-r--r--. 1 boincer umatlas      9422 Feb 12 12:23 runtime_log.err
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas       785 Feb 12 12:23 jl0KDmH5ZA9n9Rq4apOajLDm4fhM0noT9bVooX4SDmvRkKDmqTFb8n.diag
[2026-02-12 12:23:11] -rw-r--r--. 1 boincer umatlas     23268 Feb 12 12:23 stderr.txt
[2026-02-12 12:23:11] HITS file was successfully produced:
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas 264250976 Feb 12 12:21 shared/HITS.pool.root.1
[2026-02-12 12:23:11]  *** Contents of shared directory: ***
[2026-02-12 12:23:11] total 901984
[2026-02-12 12:23:11] -rw-r--r--. 3 boincer umatlas 656018568 Feb 12 06:57 ATLAS.root_0
[2026-02-12 12:23:11] -rw-r--r--. 2 boincer umatlas     15845 Feb 12 06:57 start_atlas.sh
[2026-02-12 12:23:11] -rw-r--r--. 2 boincer umatlas    597953 Feb 12 06:57 input.tar.gz
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas 264250976 Feb 12 12:21 HITS.pool.root.1
[2026-02-12 12:23:11] -rw-------. 1 boincer umatlas   2734080 Feb 12 12:23 result.tar.gz
12:23:12 (11658): run_atlas exited; CPU time 47306.056499
12:23:12 (11658): called boinc_finish(0)

</stderr_txt>
]]>

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