Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:05:52 (17063): wrapper (7.7.26015): starting
22:05:52 (17063): wrapper: running run_atlas (--nthreads 8)
[2026-02-12 22:05:52] Arguments: --nthreads 8
[2026-02-12 22:05:52] Threads: 8
[2026-02-12 22:05:52] Checking for CVMFS
[2026-02-12 22:05:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 22:05:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 22:05:53] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 22:05:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 22:05:53] 2.11.2.0 10611 84870 134132 156170 3 114 20526807 25165824 96 130560 0 25713407 99.824 17619288 2812 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-12 22:05:53] CVMFS is ok
[2026-02-12 22:05:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 22:05:53] Checking for apptainer binary...
[2026-02-12 22:05:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 22:05:53] Running /usr/bin/apptainer --version
[2026-02-12 22:05:53] apptainer version 1.3.2-1.el7
[2026-02-12 22:05:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 22:05:55] cg-vwn418.simple-grid.lan
[2026-02-12 22:05:55] apptainer works
[2026-02-12 22:05:55] Set ATHENA_PROC_NUMBER=8
[2026-02-12 22:05:55] Set ATHENA_CORE_NUMBER=8
[2026-02-12 22:05:55] Starting ATLAS job with PandaID=7013229236
[2026-02-12 22:05:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-13 04:21:11]  *** The last 200 lines of the pilot log: ***
[2026-02-13 04:21:11] 2026-02-13 03:20:02,578 | INFO     | job 7013229236 has finished - writing final server update
[2026-02-13 04:21:11] 2026-02-13 03:20:02,579 | INFO     | total number of processed events: 400 (read)
[2026-02-13 04:21:11] 2026-02-13 03:20:02,581 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7013229236/memory_monitor_summary.json (trf name=prmon)
[2026-02-13 04:21:11] 2026-02-13 03:20:02,581 | INFO     | extracted standard info from prmon json
[2026-02-13 04:21:11] 2026-02-13 03:20:02,582 | INFO     | extracted standard memory fields from prmon json
[2026-02-13 04:21:11] 2026-02-13 03:20:02,582 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-13 04:21:11] 2026-02-13 03:20:02,582 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-13 04:21:11] 2026-02-13 03:20:02,582 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-13 04:21:11] 2026-02-13 03:20:02,590 | INFO     | fitting pss+swap vs Time
[2026-02-13 04:21:11] 2026-02-13 03:20:02,591 | INFO     | sum of square deviations: 15453208812.0
[2026-02-13 04:21:11] 2026-02-13 03:20:02,605 | INFO     | sum of deviations: 41330900810.99997
[2026-02-13 04:21:11] 2026-02-13 03:20:02,606 | INFO     | mean x: 1770941594.5
[2026-02-13 04:21:11] 2026-02-13 03:20:02,606 | INFO     | mean y: 2534634.097826087
[2026-02-13 04:21:11] 2026-02-13 03:20:02,606 | INFO     | intersect: -4733996935.158861
[2026-02-13 04:21:11] 2026-02-13 03:20:02,606 | INFO     | chi2: 3.025726816361426
[2026-02-13 04:21:11] 2026-02-13 03:20:02,607 | INFO     | sum of square deviations: 14831839022.0
[2026-02-13 04:21:11] 2026-02-13 03:20:02,611 | INFO     | sum of deviations: 90876541387.0
[2026-02-13 04:21:11] 2026-02-13 03:20:02,612 | INFO     | mean x: 1770941442.0
[2026-02-13 04:21:11] 2026-02-13 03:20:02,612 | INFO     | mean y: 2546692.7052341597
[2026-02-13 04:21:11] 2026-02-13 03:20:02,612 | INFO     | intersect: -10848234050.609825
[2026-02-13 04:21:11] 2026-02-13 03:20:02,613 | INFO     | chi2: 1.4547609224692406
[2026-02-13 04:21:11] 2026-02-13 03:20:02,613 | INFO     | current chi2=1.4547609224692406 (change=51.920281943408995 %)
[2026-02-13 04:21:11] 2026-02-13 03:20:02,613 | INFO     | sum of square deviations: 14227353269.5
[2026-02-13 04:21:11] 2026-02-13 03:20:02,618 | INFO     | sum of deviations: 89495773233.5
[2026-02-13 04:21:11] 2026-02-13 03:20:02,618 | INFO     | mean x: 1770941289.5
[2026-02-13 04:21:11] 2026-02-13 03:20:02,618 | INFO     | mean y: 2546344.120111732
[2026-02-13 04:21:11] 2026-02-13 03:20:02,618 | INFO     | intersect: -11137386505.843067
[2026-02-13 04:21:11] 2026-02-13 03:20:02,619 | INFO     | chi2: 1.4546105282649093
[2026-02-13 04:21:11] 2026-02-13 03:20:02,619 | INFO     | current chi2=1.4546105282649093 (change=0.010338070126052083 %)
[2026-02-13 04:21:11] 2026-02-13 03:20:02,619 | INFO     | right removable region: 357
[2026-02-13 04:21:11] 2026-02-13 03:20:02,620 | INFO     | sum of square deviations: 14831839022.0
[2026-02-13 04:21:11] 2026-02-13 03:20:02,635 | INFO     | sum of deviations: -16191072375.999996
[2026-02-13 04:21:11] 2026-02-13 03:20:02,635 | INFO     | mean x: 1770941747.0
[2026-02-13 04:21:11] 2026-02-13 03:20:02,635 | INFO     | mean y: 2548665.1460055094
[2026-02-13 04:21:11] 2026-02-13 03:20:02,635 | INFO     | intersect: 1935784722.8476617
[2026-02-13 04:21:11] 2026-02-13 03:20:02,636 | INFO     | chi2: 1.6259150295264644
[2026-02-13 04:21:11] 2026-02-13 03:20:02,636 | INFO     | current chi2=1.6259150295264644 (change=46.26365405051005 %)
[2026-02-13 04:21:11] 2026-02-13 03:20:02,637 | INFO     | sum of square deviations: 14227353269.5
[2026-02-13 04:21:11] 2026-02-13 03:20:02,641 | INFO     | sum of deviations: -16546751633.499989
[2026-02-13 04:21:11] 2026-02-13 03:20:02,641 | INFO     | mean x: 1770941899.5
[2026-02-13 04:21:11] 2026-02-13 03:20:02,641 | INFO     | mean y: 2548741.0195530728
[2026-02-13 04:21:11] 2026-02-13 03:20:02,641 | INFO     | intersect: 2062196464.1982877
[2026-02-13 04:21:11] 2026-02-13 03:20:02,642 | INFO     | chi2: 1.6101439034194973
[2026-02-13 04:21:11] 2026-02-13 03:20:02,642 | INFO     | current chi2=1.6101439034194973 (change=0.9699846437584314 %)
[2026-02-13 04:21:11] 2026-02-13 03:20:02,642 | INFO     | left removable region: 20
[2026-02-13 04:21:11] 2026-02-13 03:20:02,643 | INFO     | sum of square deviations: 11867638328.0
[2026-02-13 04:21:11] 2026-02-13 03:20:02,646 | INFO     | sum of deviations: 24951486421.000004
[2026-02-13 04:21:11] 2026-02-13 03:20:02,647 | INFO     | mean x: 1770941869.0
[2026-02-13 04:21:11] 2026-02-13 03:20:02,647 | INFO     | mean y: 2563063.8605341245
[2026-02-13 04:21:11] 2026-02-13 03:20:02,647 | INFO     | intersect: -3720808914.242257
[2026-02-13 04:21:11] 2026-02-13 03:20:02,647 | INFO     | chi2: 0.004435135871237603
[2026-02-13 04:21:11] 2026-02-13 03:20:02,648 | INFO     | current memory leak: 2.10 B/s (using 337 data points, chi2=0.00)
[2026-02-13 04:21:11] 2026-02-13 03:20:02,648 | INFO     | could have reported an average CPU frequency of 1999 MHz (16 samples)
[2026-02-13 04:21:11] 2026-02-13 03:20:02,649 | INFO     | ..............................
[2026-02-13 04:21:11] 2026-02-13 03:20:02,649 | INFO     | . Timing measurements:
[2026-02-13 04:21:11] 2026-02-13 03:20:02,649 | INFO     | . get job = 0 s
[2026-02-13 04:21:11] 2026-02-13 03:20:02,649 | INFO     | . initial setup = 8 s
[2026-02-13 04:21:11] 2026-02-13 03:20:02,649 | INFO     | . payload setup = 9 s
[2026-02-13 04:21:11] 2026-02-13 03:20:02,649 | INFO     | . stage-in = 0 s
[2026-02-13 04:21:11] 2026-02-13 03:20:02,649 | INFO     | . payload execution = 22398 s
[2026-02-13 04:21:11] 2026-02-13 03:20:02,649 | INFO     | . stage-out = 4 s
[2026-02-13 04:21:11] 2026-02-13 03:20:02,649 | INFO     | . log creation = 1 s
[2026-02-13 04:21:11] 2026-02-13 03:20:02,649 | INFO     | ..............................
[2026-02-13 04:21:11] 2026-02-13 03:20:02,795 | INFO     | 
[2026-02-13 04:21:11] 2026-02-13 03:20:02,795 | INFO     | job summary report
[2026-02-13 04:21:11] 2026-02-13 03:20:02,795 | INFO     | --------------------------------------------------
[2026-02-13 04:21:11] 2026-02-13 03:20:02,795 | INFO     | PanDA job id: 7013229236
[2026-02-13 04:21:11] 2026-02-13 03:20:02,795 | INFO     | task id: 48431096
[2026-02-13 04:21:11] 2026-02-13 03:20:02,795 | INFO     | errors: (none)
[2026-02-13 04:21:11] 2026-02-13 03:20:02,795 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-13 04:21:11] 2026-02-13 03:20:02,796 | INFO     | pilot state: finished 
[2026-02-13 04:21:11] 2026-02-13 03:20:02,796 | INFO     | transexitcode: 0
[2026-02-13 04:21:11] 2026-02-13 03:20:02,796 | INFO     | exeerrorcode: 0
[2026-02-13 04:21:11] 2026-02-13 03:20:02,796 | INFO     | exeerrordiag: 
[2026-02-13 04:21:11] 2026-02-13 03:20:02,796 | INFO     | exitcode: 0
[2026-02-13 04:21:11] 2026-02-13 03:20:02,796 | INFO     | exitmsg: OK
[2026-02-13 04:21:11] 2026-02-13 03:20:02,796 | INFO     | cpuconsumptiontime: 87317 s
[2026-02-13 04:21:11] 2026-02-13 03:20:02,796 | INFO     | nevents: 400
[2026-02-13 04:21:11] 2026-02-13 03:20:02,796 | INFO     | neventsw: 0
[2026-02-13 04:21:11] 2026-02-13 03:20:02,796 | INFO     | pid: 25451
[2026-02-13 04:21:11] 2026-02-13 03:20:02,797 | INFO     | pgrp: 25451
[2026-02-13 04:21:11] 2026-02-13 03:20:02,797 | INFO     | corecount: 8
[2026-02-13 04:21:11] 2026-02-13 03:20:02,797 | INFO     | event service: False
[2026-02-13 04:21:11] 2026-02-13 03:20:02,797 | INFO     | sizes: {0: 2281125, 1: 2282243, 2: 2282243, 22411: 2316669, 22412: 2316668, 22417: 2325722, 22418: 2325906, 22419: 2326100}
[2026-02-13 04:21:11] 2026-02-13 03:20:02,797 | INFO     | --------------------------------------------------
[2026-02-13 04:21:11] 2026-02-13 03:20:02,797 | INFO     | 
[2026-02-13 04:21:11] 2026-02-13 03:20:02,797 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-02-13 04:21:11] 2026-02-13 03:20:03,123 | INFO     | time since job start (22421s) is within the limit (349056.0s)
[2026-02-13 04:21:11] 2026-02-13 03:20:03,343 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,343 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,343 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,343 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,343 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,344 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,344 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,344 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,344 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,344 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,344 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,344 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,344 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,344 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,345 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,345 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,345 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,345 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-13 04:21:11] 2026-02-13 03:20:03,345 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,345 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-13 04:21:11] 2026-02-13 03:20:03,345 | INFO     | job 7013229236 has completed (purged errors)
[2026-02-13 04:21:11] 2026-02-13 03:20:03,345 | INFO     | overall cleanup function is called
[2026-02-13 04:21:11] 2026-02-13 03:20:04,354 | INFO     | --- collectZombieJob: --- 10, [25451]
[2026-02-13 04:21:11] 2026-02-13 03:20:04,354 | INFO     | zombie collector waiting for pid 25451
[2026-02-13 04:21:11] 2026-02-13 03:20:04,355 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-13 04:21:11] 2026-02-13 03:20:04,355 | INFO     | collected zombie processes
[2026-02-13 04:21:11] 2026-02-13 03:20:04,355 | INFO     | will attempt to kill all subprocesses of pid=25451
[2026-02-13 04:21:11] 2026-02-13 03:20:04,442 | INFO     | process IDs to be killed: [25451] (in reverse order)
[2026-02-13 04:21:11] 2026-02-13 03:20:05,373 | WARNING  | found no corresponding commands to process id(s)
[2026-02-13 04:21:11] 2026-02-13 03:20:05,373 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-13 04:21:11] 2026-02-13 03:20:05,375 | INFO     | did not find any defunct processes belonging to 25451
[2026-02-13 04:21:11] 2026-02-13 03:20:05,377 | INFO     | did not find any defunct processes belonging to 25451
[2026-02-13 04:21:11] 2026-02-13 03:20:05,377 | INFO     | ready for new job
[2026-02-13 04:21:11] 2026-02-13 03:20:05,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-13 04:21:11] 2026-02-13 03:20:05,380 | INFO     | **************************************
[2026-02-13 04:21:11] 2026-02-13 03:20:05,380 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-13 04:21:11] 2026-02-13 03:20:05,380 | INFO     | **************************************
[2026-02-13 04:21:11] 2026-02-13 03:20:05,380 | INFO     | 
[2026-02-13 04:21:11] 2026-02-13 03:20:05,381 | INFO     | pilot is running in a VM
[2026-02-13 04:21:11] 2026-02-13 03:20:05,381 | INFO     | architecture information:
[2026-02-13 04:21:11] 2026-02-13 03:20:05,392 | INFO     | executing command: cat /etc/os-release
[2026-02-13 04:21:11] 2026-02-13 03:20:05,658 | INFO     | cat /etc/os-release:
[2026-02-13 04:21:11] NAME="CentOS Linux"
[2026-02-13 04:21:11] VERSION="7 (Core)"
[2026-02-13 04:21:11] ID="centos"
[2026-02-13 04:21:11] ID_LIKE="rhel fedora"
[2026-02-13 04:21:11] VERSION_ID="7"
[2026-02-13 04:21:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-13 04:21:11] ANSI_COLOR="0;31"
[2026-02-13 04:21:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-13 04:21:11] HOME_URL="https://www.centos.org/"
[2026-02-13 04:21:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-13 04:21:11] 
[2026-02-13 04:21:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-13 04:21:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-13 04:21:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-13 04:21:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-13 04:21:11] 
[2026-02-13 04:21:11] 2026-02-13 03:20:05,658 | INFO     | **************************************
[2026-02-13 04:21:11] 2026-02-13 03:20:06,161 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-02-13 04:21:11] 2026-02-13 03:20:06,393 | INFO     | sufficient remaining disk space (494490615808 B)
[2026-02-13 04:21:11] 2026-02-13 03:20:06,393 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-13 04:21:11] 2026-02-13 03:20:06,393 | INFO     | current server update state: UPDATING_FINAL
[2026-02-13 04:21:11] 2026-02-13 03:20:06,393 | INFO     | update_server=False
[2026-02-13 04:21:11] 2026-02-13 03:20:06,393 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-13 04:21:11] 2026-02-13 03:20:06,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-13 04:21:11] 2026-02-13 03:20:06,394 | INFO     | aborting loop
[2026-02-13 04:21:11] 2026-02-13 03:20:06,525 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-13 04:21:11] 2026-02-13 03:20:06,573 | INFO     | all job control threads have been joined
[2026-02-13 04:21:11] 2026-02-13 03:20:06,863 | INFO     | all data control threads have been joined
[2026-02-13 04:21:11] 2026-02-13 03:20:07,399 | INFO     | [job] retrieve thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:07,400 | INFO     | [job] job monitor thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:07,537 | INFO     | [job] validate thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:07,579 | INFO     | [job] control thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:07,655 | INFO     | [payload] failed_post thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:07,695 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:07,817 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-13 04:21:11] 2026-02-13 03:20:07,830 | INFO     | all payload control threads have been joined
[2026-02-13 04:21:11] 2026-02-13 03:20:07,869 | INFO     | [data] control thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:08,142 | INFO     | [payload] validate_post thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:08,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-13 04:21:11] 2026-02-13 03:20:08,392 | INFO     | [data] copytool_in thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:08,393 | INFO     | [payload] execute_payloads thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:08,418 | INFO     | [payload] validate_pre thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:08,534 | INFO     | [data] copytool_out thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:08,658 | INFO     | [job] create_data_payload thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:08,823 | INFO     | [job] queue monitor thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:08,836 | INFO     | [payload] control thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:12,161 | INFO     | [data] queue_monitor thread has finished
[2026-02-13 04:21:11] 2026-02-13 03:20:36,246 | INFO     | PID=20993 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-13 04:21:11] 2026-02-13 03:20:36,246 | INFO     | .. there are 2 such processes running
[2026-02-13 04:21:11] 2026-02-13 03:20:36,246 | INFO     | found 0 job(s) in 20 queues
[2026-02-13 04:21:11] 2026-02-13 03:20:36,247 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-13 04:21:11] 2026-02-13 03:20:36,247 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-13 04:21:11] 2026-02-13 03:21:00,567 | INFO     | [monitor] cgroup control has ended
[2026-02-13 04:21:11] 2026-02-13 03:21:01,344 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139827496208192)>', '<ExcThread(monitor, started 139827072718592)>']
[2026-02-13 04:21:11] 2026-02-13 03:21:01,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-13 04:21:11] 2026-02-13 03:21:01,396 | INFO     | [monitor] control thread has ended
[2026-02-13 04:21:11] 2026-02-13 03:21:06,370 | INFO     | all workflow threads have been joined
[2026-02-13 04:21:11] 2026-02-13 03:21:06,370 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-13 04:21:11] 2026-02-13 03:21:06,371 | INFO     | traces error code: 0
[2026-02-13 04:21:11] 2026-02-13 03:21:06,371 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-13 04:21:11] 2026-02-13 03:21:06,772 [wrapper] ==== pilot stdout END ====
[2026-02-13 04:21:11] 2026-02-13 03:21:06,892 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-13 04:21:11] 2026-02-13 03:21:06,977 [wrapper] pilotpid: 20993
[2026-02-13 04:21:11] 2026-02-13 03:21:07,096 [wrapper] Pilot exit status: 0
[2026-02-13 04:21:11] 2026-02-13 03:21:07,592 [wrapper] pandaids: 7013229236
[2026-02-13 04:21:11] 2026-02-13 03:21:08,612 [wrapper] cleanup supervisor_pilot  7303 20994
[2026-02-13 04:21:11] 2026-02-13 03:21:08,739 [wrapper] Test setup, not cleaning
[2026-02-13 04:21:11] 2026-02-13 03:21:08,851 [wrapper] apfmon messages muted
[2026-02-13 04:21:11] 2026-02-13 03:21:08,951 [wrapper] ==== wrapper stdout END ====
[2026-02-13 04:21:11] 2026-02-13 03:21:09,055 [wrapper] ==== wrapper stderr END ====
[2026-02-13 04:21:11]  *** Error codes and diagnostics ***
[2026-02-13 04:21:11]     "exeErrorCode": 0,
[2026-02-13 04:21:11]     "exeErrorDiag": "",
[2026-02-13 04:21:11]     "pilotErrorCode": 0,
[2026-02-13 04:21:11]     "pilotErrorDiag": "",
[2026-02-13 04:21:11]  *** Listing of results directory ***
[2026-02-13 04:21:11] total 947812
[2026-02-13 04:21:11] -rw-r--r--. 1 boinc boinc      5111 Feb 12 06:11 queuedata.json
[2026-02-13 04:21:11] -rw-r--r--. 1 boinc boinc    584627 Feb 12 06:11 pilot3.tar.gz
[2026-02-13 04:21:11] -rwx------. 1 boinc boinc     36322 Feb 12 06:11 runpilot2-wrapper.sh
[2026-02-13 04:21:11] -rw-r--r--. 1 boinc boinc       100 Feb 12 22:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-13 04:21:11] -rwxr-xr-x. 1 boinc boinc      7986 Feb 12 22:05 run_atlas
[2026-02-13 04:21:11] -rw-r--r--. 1 boinc boinc       105 Feb 12 22:05 job.xml
[2026-02-13 04:21:11] -rw-r--r--. 1 boinc boinc      6391 Feb 12 22:05 init_data.xml
[2026-02-13 04:21:11] -rw-r--r--. 2 boinc boinc 676412007 Feb 12 22:05 EVNT.48431094._000175.pool.root.1
[2026-02-13 04:21:11] -rw-r--r--. 2 boinc boinc     15845 Feb 12 22:05 start_atlas.sh
[2026-02-13 04:21:11] drwxrwx--x. 2 boinc boinc        68 Feb 12 22:05 shared
[2026-02-13 04:21:11] -rw-r--r--. 2 boinc boinc    597964 Feb 12 22:05 input.tar.gz
[2026-02-13 04:21:11] -rw-r--r--. 1 boinc boinc         0 Feb 12 22:05 boinc_lockfile
[2026-02-13 04:21:11] -rw-r--r--. 1 boinc boinc      2556 Feb 12 22:05 pandaJob.out
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc   1000246 Feb 12 22:06 agis_schedconf.cvmfs.json
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc       415 Feb 12 22:06 workernode_map.json
[2026-02-13 04:21:11] drwx------. 5 boinc boinc      4096 Feb 12 22:06 pilot3
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc 282711060 Feb 13 04:18 HITS.48431096._035800.pool.root.1
[2026-02-13 04:21:11] -rw-r--r--. 1 boinc boinc       531 Feb 13 04:18 boinc_task_state.xml
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc      1017 Feb 13 04:19 memory_monitor_summary.json
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc   1512955 Feb 13 04:19 agis_ddmendpoints.agis.ALL.json
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc    604288 Feb 13 04:20 log.48431096._035800.job.log.tgz.1
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc        95 Feb 13 04:20 pilot_heartbeat.json
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc      6316 Feb 13 04:20 heartbeat.json
[2026-02-13 04:21:11] -rw-r--r--. 1 boinc boinc        28 Feb 13 04:21 wrapper_checkpoint.txt
[2026-02-13 04:21:11] -rw-r--r--. 1 boinc boinc      8192 Feb 13 04:21 boinc_mmap_file
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc      4880 Feb 13 04:21 pilotlog.txt
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc   3152740 Feb 13 04:21 log.48431096._035800.job.log.1
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc       357 Feb 13 04:21 output.list
[2026-02-13 04:21:11] -rw-r--r--. 1 boinc boinc       620 Feb 13 04:21 runtime_log
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc   3778560 Feb 13 04:21 result.tar.gz
[2026-02-13 04:21:11] -rw-r--r--. 1 boinc boinc      8816 Feb 13 04:21 runtime_log.err
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc       656 Feb 13 04:21 0BJNDmGAeA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmUblKDmRC5rXm.diag
[2026-02-13 04:21:11] -rw-r--r--. 1 boinc boinc     20746 Feb 13 04:21 stderr.txt
[2026-02-13 04:21:11] HITS file was successfully produced:
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc 282711060 Feb 13 04:18 shared/HITS.pool.root.1
[2026-02-13 04:21:11]  *** Contents of shared directory: ***
[2026-02-13 04:21:11] total 940940
[2026-02-13 04:21:11] -rw-r--r--. 2 boinc boinc 676412007 Feb 12 22:05 ATLAS.root_0
[2026-02-13 04:21:11] -rw-r--r--. 2 boinc boinc     15845 Feb 12 22:05 start_atlas.sh
[2026-02-13 04:21:11] -rw-r--r--. 2 boinc boinc    597964 Feb 12 22:05 input.tar.gz
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc 282711060 Feb 13 04:18 HITS.pool.root.1
[2026-02-13 04:21:11] -rw-------. 1 boinc boinc   3778560 Feb 13 04:21 result.tar.gz
04:21:13 (17063): run_atlas exited; CPU time 87547.573280
04:21:13 (17063): called boinc_finish(0)

</stderr_txt>
]]>

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