Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-02-13 19:25:00 (3972): vboxwrapper version 26210
2026-02-13 19:25:00 (3972): BOINC client version: 8.2.8
2026-02-13 19:25:00 (3972): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2026-02-13 19:25:00 (3972): Successfully copied 'init_data.xml' to the shared directory.
2026-02-13 19:25:01 (3972): Create VM. (boinc_d8f710b99458ca78, slot#1)
2026-02-13 19:25:01 (3972): Setting Memory Size for VM. (4800MB)
2026-02-13 19:25:01 (3972): Setting CPU Count for VM. (8)
2026-02-13 19:25:02 (3972): Setting Chipset Options for VM.
2026-02-13 19:25:02 (3972): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-02-13 19:25:02 (3972): Setting Boot Options for VM.
2026-02-13 19:25:03 (3972): Setting Network Configuration for NAT. (Driver: virtio)
2026-02-13 19:25:03 (3972): Enabling VM Network Access.
2026-02-13 19:25:03 (3972): Disabling USB Support for VM.
2026-02-13 19:25:04 (3972): Disabling COM Port Support for VM.
2026-02-13 19:25:04 (3972): Disabling LPT Port Support for VM.
2026-02-13 19:25:04 (3972): Disabling Audio Support for VM.
2026-02-13 19:25:04 (3972): Disabling Clipboard Support for VM.
2026-02-13 19:25:05 (3972): Disabling Drag and Drop Support for VM.
2026-02-13 19:25:05 (3972): Adding storage controller(s) to VM.
2026-02-13 19:25:05 (3972): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-02-13 19:25:07 (3972): Adding VirtualBox Guest Additions to VM.
2026-02-13 19:25:07 (3972): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-02-13 19:25:08 (3972): forwarding host port 50637 to guest port 80
2026-02-13 19:25:08 (3972): Enabling remote desktop for VM.
2026-02-13 19:25:08 (3972): Required extension pack not installed, remote desktop not enabled.
2026-02-13 19:25:08 (3972): Enabling shared directory for VM.
2026-02-13 19:25:09 (3972): Starting VM using VBoxManage interface. (boinc_d8f710b99458ca78, slot#1)
2026-02-13 19:25:13 (3972): Successfully started VM. (PID = '22632')
2026-02-13 19:25:13 (3972): Reporting VM Process ID to BOINC.
2026-02-13 19:25:13 (3972): Guest Log: BIOS: VirtualBox 7.1.6
2026-02-13 19:25:13 (3972): Guest Log: CPUID EDX: 0x178bfbff
2026-02-13 19:25:13 (3972): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-02-13 19:25:13 (3972): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-02-13 19:25:13 (3972): VM state change detected. (old = 'poweredoff', new = 'running')
2026-02-13 19:25:13 (3972): Detected: Web Application Enabled (http://localhost:50637)
2026-02-13 19:25:13 (3972): Preference change detected
2026-02-13 19:25:13 (3972): Setting CPU throttle for VM. (100%)
2026-02-13 19:25:13 (3972): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-02-13 19:25:15 (3972): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-02-13 19:25:15 (3972): Guest Log: BIOS: Booting from Hard Disk...
2026-02-13 19:25:18 (3972): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-02-13 19:25:18 (3972): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-02-13 19:25:18 (3972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-02-13 19:25:24 (3972): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-02-13 19:25:24 (3972): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-02-13 19:25:27 (3972): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-02-13 19:25:27 (3972): Guest Log: 00:00:00.000064 main     Log opened 2026-02-13T19:25:25.965610000Z
2026-02-13 19:25:27 (3972): Guest Log: 00:00:00.000126 main     OS Product: Linux
2026-02-13 19:25:27 (3972): Guest Log: 00:00:00.000142 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-02-13 19:25:27 (3972): Guest Log: 00:00:00.000155 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-02-13 19:25:27 (3972): Guest Log: 00:00:00.000168 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-02-13 19:25:27 (3972): Guest Log: 00:00:00.000168 main     Process ID: 1378
2026-02-13 19:25:27 (3972): Guest Log: 00:00:00.000168 main     Package type: LINUX_64BITS_GENERIC
2026-02-13 19:25:27 (3972): Guest Log: 00:00:00.000537 main     5.2.32 r132073 started. Verbose level = 0
2026-02-13 19:25:27 (3972): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-02-13 19:25:27 (3972): Guest Log: [INFO] Mounting shared directory
2026-02-13 19:25:27 (3972): Guest Log: [INFO] Checking for init_data.xml
2026-02-13 19:25:36 (3972): Guest Log: 00:00:10.056534 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 390 981 114 000ns (GuestNow=1 770 978 334 985 852 000 ns GuestLast=1 771 010 725 966 966 000 ns fSetTimeLastLoop=true )
2026-02-13 19:25:48 (3972): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-02-13 19:25:48 (3972): Guest Log: [INFO] Detected branch: prod
2026-02-13 19:25:48 (3972): Guest Log: This is the prod version of the ATLAS job wrapper
2026-02-13 19:25:48 (3972): Guest Log: Copying input files
2026-02-13 19:25:49 (3972): Guest Log: Copied input files into RunAtlas.
2026-02-13 19:25:49 (3972): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-02-13 19:25:49 (3972): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-02-13 19:25:49 (3972): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-02-13 19:25:49 (3972): Guest Log: Further information can be found at the LHC@home message board.
2026-02-13 19:26:00 (3972): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-02-13 19:26:01 (3972): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-02-13 19:26:01 (3972): Guest Log: 2.6.3.0 1659 0 30164 156191 4 1 3117739 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-02-13 19:26:01 (3972): Guest Log: copied the webapp to /var/www
2026-02-13 19:26:01 (3972): Guest Log: ATHENA_PROC_NUMBER=8
2026-02-13 19:26:01 (3972): Guest Log: ATHENA_CORE_NUMBER=8
2026-02-13 19:26:01 (3972): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-02-13 19:26:01 (3972): Guest Log:  *** Starting ATLAS job. (PandaID=7013226511 taskID=48431096) ***
2026-02-13 20:25:21 (3972): VM state change detected. (old = 'running', new = 'paused')
2026-02-13 21:13:58 (3972): VM state change detected. (old = 'paused', new = 'running')
2026-02-13 21:14:02 (3972): Guest Log: 01:05:35.403593 timesync vgsvcTimeSyncWorker: Radical host time change: 2 920 437 000 000ns (HostNow=1 770 984 798 973 000 000 ns HostLast=1 770 981 878 536 000 000 ns)
2026-02-13 21:14:11 (3972): Guest Log: 01:05:45.410361 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 548 646 582 000ns (GuestNow=1 770 984 808 979 601 000 ns GuestLast=1 770 982 260 333 019 000 ns fSetTimeLastLoop=true )
2026-02-13 21:40:41 (3972): Guest Log:  *** Job finished ***
2026-02-13 21:40:41 (3972): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:20,008 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:20,008 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:22,211 | INFO     | [monitor] cgroup control has ended
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:22,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140410427750208)>', '<ExcThread(monitor, started 140409812522752)>']
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:23,323 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:23,323 | INFO     | [monitor] control thread has ended
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,541 | INFO     | all workflow threads have been joined
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,541 | INFO     | end of generic workflow (traces error code: 0)
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,541 | INFO     | traces error code: 0
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,542 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,644 [wrapper] ==== pilot stdout END ====
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,647 [wrapper] ==== wrapper stdout RESUME ====
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,650 [wrapper] pilotpid: 6094
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,652 [wrapper] Pilot exit status: 0
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,702 [wrapper] pandaids: 7013226511
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,722 [wrapper] cleanup supervisor_pilot 26025 6095
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,724 [wrapper] Test setup, not cleaning
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,727 [wrapper] apfmon messages muted
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,729 [wrapper] ==== wrapper stdout END ====
2026-02-13 21:40:41 (3972): Guest Log: 2026-02-13 12:42:27,732 [wrapper] ==== wrapper stderr END ====
2026-02-13 21:40:41 (3972): Guest Log:  *** Error codes and diagnostics ***
2026-02-13 21:40:41 (3972): Guest Log:     "exeErrorCode": 0,
2026-02-13 21:40:41 (3972): Guest Log:     "exeErrorDiag": "",
2026-02-13 21:40:41 (3972): Guest Log:     "pilotErrorCode": 1305,
2026-02-13 21:40:41 (3972): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
2026-02-13 21:40:41 (3972): Guest Log:  *** Listing of results directory ***
2026-02-13 21:40:41 (3972): Guest Log: total 6032
2026-02-13 21:40:41 (3972): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Feb 12 05:11 queuedata.json
2026-02-13 21:40:41 (3972): Guest Log: -rw-r--r--. 1 atlas atlas  584627 Feb 12 05:11 pilot3.tar.gz
2026-02-13 21:40:41 (3972): Guest Log: -rwx------. 1 atlas atlas   36322 Feb 12 05:11 runpilot2-wrapper.sh
2026-02-13 21:40:41 (3972): Guest Log: -rwxr-xr-x. 1 atlas atlas   15845 Feb 13 10:25 start_atlas.sh
2026-02-13 21:40:41 (3972): Guest Log: -rwxr-xr-x. 1 atlas atlas  597966 Feb 13 10:25 input.tar.gz
2026-02-13 21:40:41 (3972): Guest Log: -rwxr-xr-x. 1 atlas atlas    8828 Feb 13 10:25 init_data.xml
2026-02-13 21:40:41 (3972): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Feb 13 10:25 EVNT.48431094._000734.pool.root.1 -> /data/./ATLAS.root_0
2026-02-13 21:40:41 (3972): Guest Log: -rw-r--r--. 1 atlas atlas    2557 Feb 13 10:26 pandaJob.out
2026-02-13 21:40:41 (3972): Guest Log: -rw-------. 1 atlas atlas 1000247 Feb 13 10:26 agis_schedconf.cvmfs.json
2026-02-13 21:40:41 (3972): Guest Log: -rw-------. 1 atlas atlas 1512955 Feb 13 10:26 agis_ddmendpoints.agis.ALL.json
2026-02-13 21:40:41 (3972): Guest Log: -rw-------. 1 atlas atlas     404 Feb 13 10:26 workernode_map.json
2026-02-13 21:40:41 (3972): Guest Log: drwx------. 5 atlas atlas    4096 Feb 13 10:26 pilot3
2026-02-13 21:40:41 (3972): Guest Log: -rw-------. 1 atlas atlas    1024 Feb 13 12:39 memory_monitor_summary.json
2026-02-13 21:40:41 (3972): Guest Log: -rw-------. 1 atlas atlas  357486 Feb 13 12:39 log.48431096._035473.job.log.tgz.1
2026-02-13 21:40:41 (3972): Guest Log: -rw-------. 1 atlas atlas      97 Feb 13 12:41 pilot_heartbeat.json
2026-02-13 21:40:41 (3972): Guest Log: -rw-------. 1 atlas atlas    7924 Feb 13 12:41 heartbeat.json
2026-02-13 21:40:41 (3972): Guest Log: -rw-------. 1 atlas atlas    4987 Feb 13 12:42 pilotlog.txt
2026-02-13 21:40:41 (3972): Guest Log: -rw-------. 1 atlas atlas  796722 Feb 13 12:42 log.48431096._035473.job.log.1
2026-02-13 21:40:41 (3972): Guest Log: -rw-------. 1 atlas atlas     188 Feb 13 12:42 output.list
2026-02-13 21:40:41 (3972): Guest Log: -rw-r--r--. 1 atlas atlas     620 Feb 13 12:42 runtime_log
2026-02-13 21:40:41 (3972): Guest Log: -rw-------. 1 atlas atlas 1177600 Feb 13 12:42 result.tar.gz
2026-02-13 21:40:41 (3972): Guest Log: -rw-r--r--. 1 atlas atlas    8565 Feb 13 12:42 runtime_log.err
2026-02-13 21:40:41 (3972): Guest Log: -rw-------. 1 atlas atlas     646 Feb 13 12:42 IteNDm49dA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmUalKDmVojCGo.diag
2026-02-13 21:40:41 (3972): Guest Log: Looking for outputfile HITS.48431096._035473.pool.root.1
2026-02-13 21:40:41 (3972): Guest Log: No HITS file was produced
2026-02-13 21:40:41 (3972): Guest Log: Successfully finished the ATLAS job!
2026-02-13 21:40:41 (3972): Guest Log: Copying the results back to the shared directory!
2026-02-13 21:40:41 (3972): Guest Log:  *** Contents of shared directory: ***
2026-02-13 21:40:41 (3972): Guest Log: total 665348
2026-02-13 21:40:41 (3972): Guest Log: -rwxrwxrwx. 1 root root 679506421 Feb 13 10:25 ATLAS.root_0
2026-02-13 21:40:41 (3972): Guest Log: -rwxrwxrwx. 1 root root      8828 Feb 13 10:25 init_data.xml
2026-02-13 21:40:41 (3972): Guest Log: -rwxrwxrwx. 1 root root    597966 Feb 12 09:47 input.tar.gz
2026-02-13 21:40:41 (3972): Guest Log: -rwxrwxrwx. 1 root root   1177600 Feb 13 12:40 result.tar.gz
2026-02-13 21:40:41 (3972): Guest Log: -rwxrwxrwx. 1 root root     15845 Feb 12 09:47 start_atlas.sh
2026-02-13 21:40:41 (3972): Guest Log:  *** Success! Shutting down the machine. ***
2026-02-13 21:40:41 (3972): VM Completion File Detected.
2026-02-13 21:40:41 (3972): Powering off VM.
2026-02-13 21:40:41 (3972): Successfully stopped VM.
2026-02-13 21:40:41 (3972): Deregistering VM. (boinc_d8f710b99458ca78, slot#1)
2026-02-13 21:40:41 (3972): Removing network bandwidth throttle group from VM.
2026-02-13 21:40:42 (3972): Removing VM from VirtualBox.
2026-02-13 21:40:47 (3972): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN