Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:24:16 (646929): wrapper (7.7.26015): starting
02:24:16 (646929): wrapper: running run_atlas (--nthreads 4)
[2026-02-13 02:24:16] Arguments: --nthreads 4
[2026-02-13 02:24:16] Threads: 4
[2026-02-13 02:24:16] Checking for CVMFS
[2026-02-13 02:24:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-13 02:24:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-13 02:24:16] Running cvmfs_config stat atlas.cern.ch
[2026-02-13 02:24:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-13 02:24:16] 2.9.2.0 3088581 9654 96984 156177 0 49 18800118 36864000 0 130560 0 5020923 99.987 334307 7111 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-13 02:24:16] CVMFS is ok
[2026-02-13 02:24:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-13 02:24:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-13 02:24:16] Further information can be found at the LHC@home message board.
[2026-02-13 02:24:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-13 02:24:16] Checking for apptainer binary...
[2026-02-13 02:24:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-13 02:24:16] Running /usr/bin/apptainer --version
[2026-02-13 02:24:16] apptainer version 1.4.1-1.1
[2026-02-13 02:24:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-13 02:24:16] thA315b
[2026-02-13 02:24:16] apptainer works
[2026-02-13 02:24:16] Set ATHENA_PROC_NUMBER=4
[2026-02-13 02:24:16] Set ATHENA_CORE_NUMBER=4
[2026-02-13 02:24:16] Starting ATLAS job with PandaID=7009298865
[2026-02-13 02:24:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-13 03:50:52]  *** The last 200 lines of the pilot log: ***
[2026-02-13 03:50:52] 2026-02-13 02:50:20,703 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-13 03:50:52] 2026-02-13 02:50:20,703 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-13 03:50:52] 2026-02-13 02:50:20,703 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-13 03:50:52] 2026-02-13 02:50:20,704 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-13 03:50:52] 2026-02-13 02:50:20,704 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-13 03:50:52] 2026-02-13 02:50:20,704 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-13 03:50:52] 2026-02-13 02:50:20,704 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-13 03:50:52] 2026-02-13 02:50:20,704 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-13 03:50:52] 2026-02-13 02:50:20,704 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-13 03:50:52] 2026-02-13 02:50:20,704 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-13 03:50:52] 2026-02-13 02:50:20,704 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-13 03:50:52] 2026-02-13 02:50:20,704 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-13 03:50:52] 2026-02-13 02:50:20,704 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-13 03:50:52] 2026-02-13 02:50:20,704 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-13 03:50:52] 2026-02-13 02:50:20,704 | INFO     | job 7009298865 has completed (purged errors)
[2026-02-13 03:50:52] 2026-02-13 02:50:20,704 | INFO     | overall cleanup function is called
[2026-02-13 03:50:52] 2026-02-13 02:50:21,711 | INFO     | --- collectZombieJob: --- 10, [655537]
[2026-02-13 03:50:52] 2026-02-13 02:50:21,711 | INFO     | zombie collector waiting for pid 655537
[2026-02-13 03:50:52] 2026-02-13 02:50:21,711 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-13 03:50:52] 2026-02-13 02:50:21,711 | INFO     | collected zombie processes
[2026-02-13 03:50:52] 2026-02-13 02:50:21,711 | INFO     | will attempt to kill all subprocesses of pid=655537
[2026-02-13 03:50:52] 2026-02-13 02:50:21,756 | INFO     | process IDs to be killed: [655537] (in reverse order)
[2026-02-13 03:50:52] 2026-02-13 02:50:21,783 | WARNING  | found no corresponding commands to process id(s)
[2026-02-13 03:50:52] 2026-02-13 02:50:21,783 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-13 03:50:52] 2026-02-13 02:50:21,785 | INFO     | did not find any defunct processes belonging to 655537
[2026-02-13 03:50:52] 2026-02-13 02:50:21,786 | INFO     | did not find any defunct processes belonging to 655537
[2026-02-13 03:50:52] 2026-02-13 02:50:21,786 | INFO     | ready for new job
[2026-02-13 03:50:52] 2026-02-13 02:50:21,786 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-13 03:50:52] 2026-02-13 02:50:21,787 | INFO     | **************************************
[2026-02-13 03:50:52] 2026-02-13 02:50:21,787 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-13 03:50:52] 2026-02-13 02:50:21,787 | INFO     | **************************************
[2026-02-13 03:50:52] 2026-02-13 02:50:21,787 | INFO     | 
[2026-02-13 03:50:52] 2026-02-13 02:50:21,787 | INFO     | architecture information:
[2026-02-13 03:50:52] 2026-02-13 02:50:21,788 | INFO     | executing command: cat /etc/os-release
[2026-02-13 03:50:52] 2026-02-13 02:50:21,797 | INFO     | cat /etc/os-release:
[2026-02-13 03:50:52] NAME="CentOS Linux"
[2026-02-13 03:50:52] VERSION="7 (Core)"
[2026-02-13 03:50:52] ID="centos"
[2026-02-13 03:50:52] ID_LIKE="rhel fedora"
[2026-02-13 03:50:52] VERSION_ID="7"
[2026-02-13 03:50:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-13 03:50:52] ANSI_COLOR="0;31"
[2026-02-13 03:50:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-13 03:50:52] HOME_URL="https://www.centos.org/"
[2026-02-13 03:50:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-13 03:50:52] 
[2026-02-13 03:50:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-13 03:50:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-13 03:50:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-13 03:50:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-13 03:50:52] 
[2026-02-13 03:50:52] 2026-02-13 02:50:21,797 | INFO     | **************************************
[2026-02-13 03:50:52] 2026-02-13 02:50:22,300 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-13 03:50:52] 2026-02-13 02:50:22,314 | INFO     | sufficient remaining disk space (335121743872 B)
[2026-02-13 03:50:52] 2026-02-13 02:50:22,314 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-13 03:50:52] 2026-02-13 02:50:22,315 | INFO     | current server update state: UPDATING_FINAL
[2026-02-13 03:50:52] 2026-02-13 02:50:22,315 | INFO     | update_server=False
[2026-02-13 03:50:52] 2026-02-13 02:50:22,315 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-13 03:50:52] 2026-02-13 02:50:22,315 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-13 03:50:52] 2026-02-13 02:50:22,315 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-13 03:50:52] 2026-02-13 02:50:22,631 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-13 03:50:52] 2026-02-13 02:50:22,631 | INFO     | aborting loop
[2026-02-13 03:50:52] 2026-02-13 02:50:22,686 | INFO     | all data control threads have been joined
[2026-02-13 03:50:52] 2026-02-13 02:50:22,804 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-13 03:50:52] 2026-02-13 02:50:23,058 | INFO     | all payload control threads have been joined
[2026-02-13 03:50:52] 2026-02-13 02:50:23,320 | INFO     | [job] queue monitor thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:23,321 | INFO     | [job] retrieve thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:23,525 | INFO     | [payload] failed_post thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:23,636 | INFO     | [job] job monitor thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:23,692 | INFO     | [data] control thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:23,695 | INFO     | all job control threads have been joined
[2026-02-13 03:50:52] 2026-02-13 02:50:23,868 | INFO     | [job] validate thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:23,938 | INFO     | [payload] execute_payloads thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:23,962 | INFO     | [job] create_data_payload thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:23,962 | INFO     | [payload] validate_pre thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:24,064 | INFO     | [payload] control thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:24,132 | INFO     | [data] copytool_in thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:24,368 | INFO     | [payload] validate_post thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:24,700 | INFO     | [job] control thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:24,810 | INFO     | [data] copytool_out thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:26,322 | INFO     | [data] queue_monitor thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:32,718 | INFO     | job.realtimelogging is not enabled
[2026-02-13 03:50:52] 2026-02-13 02:50:33,429 | INFO     | [monitor] cgroup control has ended
[2026-02-13 03:50:52] 2026-02-13 02:50:33,723 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-13 03:50:52] 2026-02-13 02:50:33,745 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140703891547968)>', '<ExcThread(monitor, started 140703103436544)>']
[2026-02-13 03:50:52] 2026-02-13 02:50:38,771 | INFO     | all workflow threads have been joined
[2026-02-13 03:50:52] 2026-02-13 02:50:38,771 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-13 03:50:52] 2026-02-13 02:50:38,771 | INFO     | traces error code: 0
[2026-02-13 03:50:52] 2026-02-13 02:50:38,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-13 03:50:52] 2026-02-13 02:50:52,095 | INFO     | PID=651025 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-13 03:50:52] 2026-02-13 02:50:52,095 | INFO     | found 0 job(s) in 20 queues
[2026-02-13 03:50:52] 2026-02-13 02:50:52,095 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-13 03:50:52] 2026-02-13 02:50:52,095 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-13 03:50:52] 2026-02-13 02:50:52,095 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-13 03:50:52] 2026-02-13 02:50:52,095 | INFO     | [monitor] control thread has ended
[2026-02-13 03:50:52] 2026-02-13 02:50:52,146 [wrapper] ==== pilot stdout END ====
[2026-02-13 03:50:52] 2026-02-13 02:50:52,149 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-13 03:50:52] 2026-02-13 02:50:52,151 [wrapper] pilotpid: 651025
[2026-02-13 03:50:52] 2026-02-13 02:50:52,154 [wrapper] Pilot exit status: 0
[2026-02-13 03:50:52] 2026-02-13 02:50:52,162 [wrapper] pandaids: 7009298865
[2026-02-13 03:50:52] 2026-02-13 02:50:52,180 [wrapper] cleanup supervisor_pilot  660375 651026
[2026-02-13 03:50:52] 2026-02-13 02:50:52,182 [wrapper] Test setup, not cleaning
[2026-02-13 03:50:52] 2026-02-13 02:50:52,185 [wrapper] apfmon messages muted
[2026-02-13 03:50:52] 2026-02-13 02:50:52,187 [wrapper] ==== wrapper stdout END ====
[2026-02-13 03:50:52] 2026-02-13 02:50:52,190 [wrapper] ==== wrapper stderr END ====
[2026-02-13 03:50:52]  *** Error codes and diagnostics ***
[2026-02-13 03:50:52]     "exeErrorCode": 0,
[2026-02-13 03:50:52]     "exeErrorDiag": "",
[2026-02-13 03:50:52]     "pilotErrorCode": 0,
[2026-02-13 03:50:52]     "pilotErrorDiag": "",
[2026-02-13 03:50:52]  *** Listing of results directory ***
[2026-02-13 03:50:52] total 891604
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc    584627 Feb 12 10:23 pilot3.tar.gz
[2026-02-13 03:50:52] -rwx------ 1 boinc boinc     36322 Feb 12 10:25 runpilot2-wrapper.sh
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc      5111 Feb 12 10:26 queuedata.json
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc       100 Feb 13 02:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-13 03:50:52] -rwxr-xr-x 1 boinc boinc      7986 Feb 13 02:24 run_atlas
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc       105 Feb 13 02:24 job.xml
[2026-02-13 03:50:52] -rw-r--r-- 2 boinc boinc 649410836 Feb 13 02:24 EVNT.48431111._000241.pool.root.1
[2026-02-13 03:50:52] drwxrwx--x 2 boinc boinc      4096 Feb 13 02:24 shared
[2026-02-13 03:50:52] -rw-r--r-- 2 boinc boinc    597957 Feb 13 02:24 input.tar.gz
[2026-02-13 03:50:52] -rw-r--r-- 2 boinc boinc     15845 Feb 13 02:24 start_atlas.sh
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc         0 Feb 13 02:24 boinc_setup_complete
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc      6443 Feb 13 02:24 init_data.xml
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc         0 Feb 13 02:24 boinc_lockfile
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc      2547 Feb 13 02:24 pandaJob.out
[2026-02-13 03:50:52] -rw------- 1 boinc boinc   1000262 Feb 13 02:24 agis_schedconf.cvmfs.json
[2026-02-13 03:50:52] -rw------- 1 boinc boinc   1512955 Feb 13 02:24 agis_ddmendpoints.agis.ALL.json
[2026-02-13 03:50:52] -rw------- 1 boinc boinc       418 Feb 13 02:24 workernode_map.json
[2026-02-13 03:50:52] drwx------ 5 boinc boinc      4096 Feb 13 02:24 pilot3
[2026-02-13 03:50:52] -rw------- 1 boinc boinc 257575879 Feb 13 03:49 HITS.48431113._012484.pool.root.1
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc       530 Feb 13 03:50 boinc_task_state.xml
[2026-02-13 03:50:52] -rw------- 1 boinc boinc      1015 Feb 13 03:50 memory_monitor_summary.json
[2026-02-13 03:50:52] -rw------- 1 boinc boinc    295781 Feb 13 03:50 log.48431113._012484.job.log.tgz.1
[2026-02-13 03:50:52] -rw------- 1 boinc boinc      6296 Feb 13 03:50 heartbeat.json
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc        27 Feb 13 03:50 wrapper_checkpoint.txt
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc      8192 Feb 13 03:50 boinc_mmap_file
[2026-02-13 03:50:52] -rw------- 1 boinc boinc       746 Feb 13 03:50 pilotlog.txt
[2026-02-13 03:50:52] -rw------- 1 boinc boinc        95 Feb 13 03:50 pilot_heartbeat.json
[2026-02-13 03:50:52] -rw------- 1 boinc boinc    752300 Feb 13 03:50 log.48431113._012484.job.log.1
[2026-02-13 03:50:52] -rw------- 1 boinc boinc       357 Feb 13 03:50 output.list
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc       620 Feb 13 03:50 runtime_log
[2026-02-13 03:50:52] -rw------- 1 boinc boinc   1064960 Feb 13 03:50 result.tar.gz
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc      8901 Feb 13 03:50 runtime_log.err
[2026-02-13 03:50:52] -rw------- 1 boinc boinc       658 Feb 13 03:50 XazNDmI8hA9n9Rq4apOajLDm4fhM0noT9bVooX4SDmm2kKDmDzjoBo.diag
[2026-02-13 03:50:52] -rw-r--r-- 1 boinc boinc     12328 Feb 13 03:50 stderr.txt
[2026-02-13 03:50:52] HITS file was successfully produced:
[2026-02-13 03:50:52] -rw------- 1 boinc boinc 257575879 Feb 13 03:49 shared/HITS.pool.root.1
[2026-02-13 03:50:52]  *** Contents of shared directory: ***
[2026-02-13 03:50:52] total 887380
[2026-02-13 03:50:52] -rw-r--r-- 2 boinc boinc 649410836 Feb 13 02:24 ATLAS.root_0
[2026-02-13 03:50:52] -rw-r--r-- 2 boinc boinc    597957 Feb 13 02:24 input.tar.gz
[2026-02-13 03:50:52] -rw-r--r-- 2 boinc boinc     15845 Feb 13 02:24 start_atlas.sh
[2026-02-13 03:50:52] -rw------- 1 boinc boinc 257575879 Feb 13 03:49 HITS.pool.root.1
[2026-02-13 03:50:52] -rw------- 1 boinc boinc   1064960 Feb 13 03:50 result.tar.gz
03:50:53 (646929): run_atlas exited; CPU time 19539.253612
03:50:53 (646929): called boinc_finish(0)

</stderr_txt>
]]>

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