Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2026-02-12 12:13:54 (5080): vboxwrapper version 26210
2026-02-12 12:13:54 (5080): BOINC client version: 8.2.4
2026-02-12 12:13:54 (5080): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2026-02-12 12:13:55 (5080): Successfully copied 'init_data.xml' to the shared directory.
2026-02-12 12:13:55 (5080): Create VM. (boinc_d916f961a9f68015, slot#1)
2026-02-12 12:13:56 (5080): Setting Memory Size for VM. (4800MB)
2026-02-12 12:13:56 (5080): Setting CPU Count for VM. (8)
2026-02-12 12:13:56 (5080): Setting Chipset Options for VM.
2026-02-12 12:13:57 (5080): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-02-12 12:13:57 (5080): Setting Boot Options for VM.
2026-02-12 12:13:57 (5080): Setting Network Configuration for NAT. (Driver: virtio)
2026-02-12 12:13:58 (5080): Enabling VM Network Access.
2026-02-12 12:13:58 (5080): Disabling USB Support for VM.
2026-02-12 12:13:58 (5080): Disabling COM Port Support for VM.
2026-02-12 12:13:58 (5080): Disabling LPT Port Support for VM.
2026-02-12 12:13:59 (5080): Disabling Audio Support for VM.
2026-02-12 12:13:59 (5080): Disabling Clipboard Support for VM.
2026-02-12 12:13:59 (5080): Disabling Drag and Drop Support for VM.
2026-02-12 12:13:59 (5080): Adding storage controller(s) to VM.
2026-02-12 12:14:00 (5080): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-02-12 12:14:00 (5080): Adding VirtualBox Guest Additions to VM.
2026-02-12 12:14:00 (5080): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-02-12 12:14:01 (5080): forwarding host port 54488 to guest port 80
2026-02-12 12:14:01 (5080): Enabling remote desktop for VM.
2026-02-12 12:14:01 (5080): Required extension pack not installed, remote desktop not enabled.
2026-02-12 12:14:01 (5080): Enabling shared directory for VM.
2026-02-12 12:14:02 (5080): Starting VM using VBoxManage interface. (boinc_d916f961a9f68015, slot#1)
2026-02-12 12:14:10 (5080): Successfully started VM. (PID = '11548')
2026-02-12 12:14:10 (5080): Reporting VM Process ID to BOINC.
2026-02-12 12:14:10 (5080): Guest Log: BIOS: VirtualBox 7.1.4
2026-02-12 12:14:10 (5080): Guest Log: CPUID EDX: 0x178bfbff
2026-02-12 12:14:10 (5080): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-02-12 12:14:10 (5080): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-02-12 12:14:10 (5080): VM state change detected. (old = 'poweredoff', new = 'running')
2026-02-12 12:14:10 (5080): Detected: Web Application Enabled (http://localhost:54488)
2026-02-12 12:14:10 (5080): Preference change detected
2026-02-12 12:14:10 (5080): Setting CPU throttle for VM. (100%)
2026-02-12 12:14:10 (5080): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2026-02-12 12:14:12 (5080): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-02-12 12:14:12 (5080): Guest Log: BIOS: Booting from Hard Disk...
2026-02-12 12:14:16 (5080): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-02-12 12:14:16 (5080): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-02-12 12:14:16 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-02-12 12:14:25 (5080): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-02-12 12:14:25 (5080): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-02-12 12:14:42 (5080): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-02-12 12:14:42 (5080): Guest Log: 00:00:00.000322 main     Log opened 2026-02-12T12:14:40.320607000Z
2026-02-12 12:14:42 (5080): Guest Log: 00:00:00.000525 main     OS Product: Linux
2026-02-12 12:14:42 (5080): Guest Log: 00:00:00.000603 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-02-12 12:14:42 (5080): Guest Log: 00:00:00.000672 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-02-12 12:14:42 (5080): Guest Log: 00:00:00.000740 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-02-12 12:14:42 (5080): Guest Log: 00:00:00.000742 main     Process ID: 1383
2026-02-12 12:14:42 (5080): Guest Log: 00:00:00.000744 main     Package type: LINUX_64BITS_GENERIC
2026-02-12 12:14:42 (5080): Guest Log: 00:00:00.003459 main     5.2.32 r132073 started. Verbose level = 0
2026-02-12 12:14:42 (5080): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-02-12 12:14:42 (5080): Guest Log: [INFO] Mounting shared directory
2026-02-12 12:14:42 (5080): Guest Log: [INFO] Checking for init_data.xml
2026-02-12 12:14:52 (5080): Guest Log: 00:00:10.012977 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 684 378 000ns (GuestNow=1 770 894 891 642 412 000 ns GuestLast=1 770 898 480 326 790 000 ns fSetTimeLastLoop=true )
2026-02-12 12:14:58 (5080): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-02-12 12:14:58 (5080): Guest Log: [INFO] Detected branch: prod
2026-02-12 12:14:59 (5080): Guest Log: This is the prod version of the ATLAS job wrapper
2026-02-12 12:14:59 (5080): Guest Log: Copying input files
2026-02-12 12:15:06 (5080): Guest Log: Copied input files into RunAtlas.
2026-02-12 12:15:06 (5080): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-02-12 12:15:06 (5080): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-02-12 12:15:06 (5080): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-02-12 12:15:06 (5080): Guest Log: Further information can be found at the LHC@home message board.
2026-02-12 12:15:29 (5080): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-02-12 12:15:30 (5080): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-02-12 12:15:30 (5080): Guest Log: 2.6.3.0 1662 0 32196 156154 2 1 3117739 4096000 0 65024 1 0 n/a 1 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-02-12 12:15:32 (5080): Guest Log: copied the webapp to /var/www
2026-02-12 12:15:32 (5080): Guest Log: ATHENA_PROC_NUMBER=8
2026-02-12 12:15:32 (5080): Guest Log: ATHENA_CORE_NUMBER=8
2026-02-12 12:15:34 (5080): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-02-12 12:15:34 (5080): Guest Log:  *** Starting ATLAS job. (PandaID=7009069451 taskID=48442031) ***
2026-02-12 13:54:15 (5080): Status Report: Elapsed Time: '6000.000000'
2026-02-12 13:54:15 (5080): Status Report: CPU Time: '34636.718750'
2026-02-12 15:34:21 (5080): Status Report: Elapsed Time: '12000.000000'
2026-02-12 15:34:21 (5080): Status Report: CPU Time: '79715.515625'
2026-02-12 17:14:27 (5080): Status Report: Elapsed Time: '18000.000000'
2026-02-12 17:14:27 (5080): Status Report: CPU Time: '123355.468750'
2026-02-12 17:17:41 (5080): Guest Log:  *** Job finished ***
2026-02-12 17:17:41 (5080): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:22,672 | INFO     | end of generic workflow (traces error code: 0)
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:22,672 | INFO     | traces error code: 0
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:22,672 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,310 | INFO     | PID=6146 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,311 | INFO     | found 0 job(s) in 20 queues
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,311 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,312 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,312 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,312 | CRITICAL | thread 'MainThread' is not alive
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,313 | INFO     | [monitor] control thread has ended
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,505 [wrapper] ==== pilot stdout END ====
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,517 [wrapper] ==== wrapper stdout RESUME ====
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,530 [wrapper] pilotpid: 6146
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,543 [wrapper] Pilot exit status: 0
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,677 [wrapper] pandaids: 7009069451
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,767 [wrapper] cleanup supervisor_pilot 29434 6147
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,780 [wrapper] Test setup, not cleaning
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,798 [wrapper] apfmon messages muted
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,810 [wrapper] ==== wrapper stdout END ====
2026-02-12 17:17:41 (5080): Guest Log: 2026-02-12 16:17:40,822 [wrapper] ==== wrapper stderr END ====
2026-02-12 17:17:41 (5080): Guest Log:  *** Error codes and diagnostics ***
2026-02-12 17:17:41 (5080): Guest Log:     "exeErrorCode": 0,
2026-02-12 17:17:41 (5080): Guest Log:     "exeErrorDiag": "",
2026-02-12 17:17:41 (5080): Guest Log:     "pilotErrorCode": 0,
2026-02-12 17:17:41 (5080): Guest Log:     "pilotErrorDiag": "",
2026-02-12 17:17:41 (5080): Guest Log:  *** Listing of results directory ***
2026-02-12 17:17:41 (5080): Guest Log: total 188484
2026-02-12 17:17:41 (5080): Guest Log: -rw-r--r--. 1 atlas atlas    584627 Feb 12 03:03 pilot3.tar.gz
2026-02-12 17:17:41 (5080): Guest Log: -rwx------. 1 atlas atlas     36322 Feb 12 03:04 runpilot2-wrapper.sh
2026-02-12 17:17:41 (5080): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Feb 12 03:05 queuedata.json
2026-02-12 17:17:41 (5080): Guest Log: -rwxr-xr-x. 1 atlas atlas      5954 Feb 12 11:15 init_data.xml
2026-02-12 17:17:41 (5080): Guest Log: -rwxr-xr-x. 1 atlas atlas    597953 Feb 12 11:15 input.tar.gz
2026-02-12 17:17:41 (5080): Guest Log: -rwxr-xr-x. 1 atlas atlas     15845 Feb 12 11:15 start_atlas.sh
2026-02-12 17:17:41 (5080): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 12 11:15 EVNT.48442027._000204.pool.root.1 -> /data/./ATLAS.root_0
2026-02-12 17:17:41 (5080): Guest Log: -rw-r--r--. 1 atlas atlas      2530 Feb 12 11:15 pandaJob.out
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas   1000167 Feb 12 11:18 agis_schedconf.cvmfs.json
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas       411 Feb 12 11:18 workernode_map.json
2026-02-12 17:17:41 (5080): Guest Log: drwx------. 5 atlas atlas      4096 Feb 12 11:19 pilot3
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas 183227853 Feb 12 16:15 HITS.48442031._010574.pool.root.1
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas        95 Feb 12 16:16 pilot_heartbeat.json
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas      1046 Feb 12 16:16 memory_monitor_summary.json
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas   1512955 Feb 12 16:16 agis_ddmendpoints.agis.ALL.json
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas    515460 Feb 12 16:17 log.48442031._010574.job.log.tgz.1
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas      6338 Feb 12 16:17 heartbeat.json
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas       814 Feb 12 16:17 pilotlog.txt
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas   2445448 Feb 12 16:17 log.48442031._010574.job.log.1
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas       357 Feb 12 16:17 output.list
2026-02-12 17:17:41 (5080): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 12 16:17 runtime_log
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas   2979840 Feb 12 16:17 result.tar.gz
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas       677 Feb 12 16:17 trNKDmUBcA9n9Rq4apOajLDm4fhM0noT9bVooX4SDmjYkKDmssEhNm.diag
2026-02-12 17:17:41 (5080): Guest Log: -rw-r--r--. 1 atlas atlas      8802 Feb 12 16:17 runtime_log.err
2026-02-12 17:17:41 (5080): Guest Log: Looking for outputfile HITS.48442031._010574.pool.root.1
2026-02-12 17:17:41 (5080): Guest Log: HITS file was successfully produced
2026-02-12 17:17:41 (5080): Guest Log: -rw-------. 1 atlas atlas 183227853 Feb 12 16:15 /home/atlas/RunAtlas/HITS.48442031._010574.pool.root.1
2026-02-12 17:17:44 (5080): Guest Log: Successfully finished the ATLAS job!
2026-02-12 17:17:44 (5080): Guest Log: Copying the results back to the shared directory!
2026-02-12 17:17:44 (5080): Guest Log:  *** Contents of shared directory: ***
2026-02-12 17:17:44 (5080): Guest Log: total 665956
2026-02-12 17:17:44 (5080): Guest Log: -rwxrwxrwx. 1 root root 495103721 Feb 12 11:13 ATLAS.root_0
2026-02-12 17:17:44 (5080): Guest Log: -rwxrwxrwx. 1 root root 183227853 Feb 12 16:17 HITS.pool.root.1
2026-02-12 17:17:44 (5080): Guest Log: -rwxrwxrwx. 1 root root      5954 Feb 12 11:13 init_data.xml
2026-02-12 17:17:44 (5080): Guest Log: -rwxrwxrwx. 1 root root    597953 Feb 12 09:24 input.tar.gz
2026-02-12 17:17:44 (5080): Guest Log: -rwxrwxrwx. 1 root root   2979840 Feb 12 16:17 result.tar.gz
2026-02-12 17:17:44 (5080): Guest Log: -rwxrwxrwx. 1 root root     15845 Feb 12 09:24 start_atlas.sh
2026-02-12 17:17:44 (5080): Guest Log:  *** Success! Shutting down the machine. ***
2026-02-12 17:17:44 (5080): VM Completion File Detected.
2026-02-12 17:17:44 (5080): Powering off VM.
2026-02-12 17:17:45 (5080): Successfully stopped VM.
2026-02-12 17:17:45 (5080): Deregistering VM. (boinc_d916f961a9f68015, slot#1)
2026-02-12 17:17:45 (5080): Removing network bandwidth throttle group from VM.
2026-02-12 17:17:45 (5080): Removing VM from VirtualBox.
2026-02-12 17:17:51 (5080): called boinc_finish(0)

</stderr_txt>
]]>

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