Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:16:21 (473425): wrapper (7.7.26015): starting
18:16:21 (473425): wrapper: running run_atlas (--nthreads 3)
[2026-02-12 18:16:21] Arguments: --nthreads 3
[2026-02-12 18:16:21] Threads: 3
[2026-02-12 18:16:21] Checking for CVMFS
[2026-02-12 18:16:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 18:16:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 18:16:22] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 18:16:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 18:16:22] 2.9.2.0 3416042 9120 85824 156162 3 50 21178420 36864001 0 130560 0 3583189 99.983 318364 4320 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-12 18:16:22] CVMFS is ok
[2026-02-12 18:16:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 18:16:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 18:16:22] Further information can be found at the LHC@home message board.
[2026-02-12 18:16:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 18:16:22] Checking for apptainer binary...
[2026-02-12 18:16:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 18:16:22] Running /usr/bin/apptainer --version
[2026-02-12 18:16:22] apptainer version 1.4.1-1.1
[2026-02-12 18:16:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 18:16:22] thA331a
[2026-02-12 18:16:22] apptainer works
[2026-02-12 18:16:22] Set ATHENA_PROC_NUMBER=3
[2026-02-12 18:16:22] Set ATHENA_CORE_NUMBER=3
[2026-02-12 18:16:22] Starting ATLAS job with PandaID=7012283976
[2026-02-12 18:16:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 20:18:45]  *** The last 200 lines of the pilot log: ***
[2026-02-12 20:18:45] 2026-02-12 19:17:40,215 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-12 20:18:45] 2026-02-12 19:17:40,215 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 20:18:45] 2026-02-12 19:17:40,215 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 20:18:45] 2026-02-12 19:17:40,215 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 20:18:45] 2026-02-12 19:17:40,215 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 20:18:45] 2026-02-12 19:17:40,215 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 20:18:45] 2026-02-12 19:17:40,215 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 20:18:45] 2026-02-12 19:17:40,215 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 20:18:45] 2026-02-12 19:17:40,215 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 20:18:45] 2026-02-12 19:17:40,215 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 20:18:45] 2026-02-12 19:17:40,215 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 20:18:45] 2026-02-12 19:17:40,215 | INFO     | job 7012283976 has completed (purged errors)
[2026-02-12 20:18:45] 2026-02-12 19:17:40,216 | INFO     | overall cleanup function is called
[2026-02-12 20:18:45] 2026-02-12 19:17:40,804 | WARNING  | process 481892 can no longer be monitored (due to stat problems) - aborting
[2026-02-12 20:18:45] 2026-02-12 19:17:40,832 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 20:18:45] 2026-02-12 19:17:40,867 | INFO     | number of running child processes to parent process 481892: 1
[2026-02-12 20:18:45] 2026-02-12 19:17:40,867 | INFO     | maximum number of monitored processes: 6
[2026-02-12 20:18:45] 2026-02-12 19:17:40,867 | INFO     | aborting job monitoring since job object (job id=7012283976) has expired
[2026-02-12 20:18:45] 2026-02-12 19:17:41,219 | INFO     | --- collectZombieJob: --- 10, [481892]
[2026-02-12 20:18:45] 2026-02-12 19:17:41,220 | INFO     | zombie collector waiting for pid 481892
[2026-02-12 20:18:45] 2026-02-12 19:17:41,220 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 20:18:45] 2026-02-12 19:17:41,220 | INFO     | collected zombie processes
[2026-02-12 20:18:45] 2026-02-12 19:17:41,220 | INFO     | will attempt to kill all subprocesses of pid=481892
[2026-02-12 20:18:45] 2026-02-12 19:17:41,259 | INFO     | process IDs to be killed: [481892] (in reverse order)
[2026-02-12 20:18:45] 2026-02-12 19:17:41,282 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 20:18:45] 2026-02-12 19:17:41,282 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 20:18:45] 2026-02-12 19:17:41,284 | INFO     | did not find any defunct processes belonging to 481892
[2026-02-12 20:18:45] 2026-02-12 19:17:41,285 | INFO     | did not find any defunct processes belonging to 481892
[2026-02-12 20:18:45] 2026-02-12 19:17:41,285 | INFO     | ready for new job
[2026-02-12 20:18:45] 2026-02-12 19:17:41,285 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 20:18:45] 2026-02-12 19:17:41,286 | INFO     | **************************************
[2026-02-12 20:18:45] 2026-02-12 19:17:41,286 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 20:18:45] 2026-02-12 19:17:41,286 | INFO     | **************************************
[2026-02-12 20:18:45] 2026-02-12 19:17:41,286 | INFO     | 
[2026-02-12 20:18:45] 2026-02-12 19:17:41,286 | INFO     | architecture information:
[2026-02-12 20:18:45] 2026-02-12 19:17:41,286 | INFO     | executing command: cat /etc/os-release
[2026-02-12 20:18:45] 2026-02-12 19:17:41,294 | INFO     | cat /etc/os-release:
[2026-02-12 20:18:45] NAME="CentOS Linux"
[2026-02-12 20:18:45] VERSION="7 (Core)"
[2026-02-12 20:18:45] ID="centos"
[2026-02-12 20:18:45] ID_LIKE="rhel fedora"
[2026-02-12 20:18:45] VERSION_ID="7"
[2026-02-12 20:18:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 20:18:45] ANSI_COLOR="0;31"
[2026-02-12 20:18:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 20:18:45] HOME_URL="https://www.centos.org/"
[2026-02-12 20:18:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 20:18:45] 
[2026-02-12 20:18:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 20:18:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 20:18:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 20:18:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 20:18:45] 
[2026-02-12 20:18:45] 2026-02-12 19:17:41,295 | INFO     | **************************************
[2026-02-12 20:18:45] 2026-02-12 19:17:41,798 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-12 20:18:45] 2026-02-12 19:17:41,810 | INFO     | sufficient remaining disk space (334343700480 B)
[2026-02-12 20:18:45] 2026-02-12 19:17:41,811 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 20:18:45] 2026-02-12 19:17:41,811 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 20:18:45] 2026-02-12 19:17:41,811 | INFO     | update_server=False
[2026-02-12 20:18:45] 2026-02-12 19:17:41,811 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 20:18:45] 2026-02-12 19:17:41,811 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 20:18:45] 2026-02-12 19:17:41,811 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-12 20:18:45] 2026-02-12 19:17:41,811 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 20:18:45] 2026-02-12 19:17:41,811 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 20:18:45] 2026-02-12 19:17:41,811 | INFO     | will abort loop
[2026-02-12 20:18:45] 2026-02-12 19:17:41,811 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 20:18:45] 2026-02-12 19:17:41,812 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 20:18:45] 2026-02-12 19:17:42,378 | INFO     | all job control threads have been joined
[2026-02-12 20:18:45] 2026-02-12 19:17:42,445 | INFO     | all payload control threads have been joined
[2026-02-12 20:18:45] 2026-02-12 19:17:42,774 | INFO     | all data control threads have been joined
[2026-02-12 20:18:45] 2026-02-12 19:17:42,816 | INFO     | [job] retrieve thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:42,817 | INFO     | [job] job monitor thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:42,838 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:42,993 | INFO     | [data] copytool_in thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:43,032 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:43,313 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 20:18:45] 2026-02-12 19:17:43,384 | INFO     | [job] control thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:43,450 | INFO     | [payload] control thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:43,549 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:43,780 | INFO     | [data] control thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:43,816 | INFO     | [data] copytool_out thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:44,073 | INFO     | [payload] validate_post thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:44,215 | INFO     | [job] validate thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:44,217 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:44,272 | INFO     | [payload] failed_post thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:44,745 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 20:18:45] 2026-02-12 19:17:45,751 | INFO     | [job] queue monitor thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:17:47,320 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 20:18:45] 2026-02-12 19:18:40,178 | INFO     | [monitor] cgroup control has ended
[2026-02-12 20:18:45] 2026-02-12 19:18:40,303 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140119666710336)>', '<ExcThread(monitor, started 140118736234240)>']
[2026-02-12 20:18:45] 2026-02-12 19:18:41,103 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 20:18:45] 2026-02-12 19:18:41,103 | INFO     | [monitor] control thread has ended
[2026-02-12 20:18:45] 2026-02-12 19:18:45,305 | INFO     | all workflow threads have been joined
[2026-02-12 20:18:45] 2026-02-12 19:18:45,306 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 20:18:45] 2026-02-12 19:18:45,307 | INFO     | traces error code: 0
[2026-02-12 20:18:45] 2026-02-12 19:18:45,307 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 20:18:45] 2026-02-12 19:18:45,355 [wrapper] ==== pilot stdout END ====
[2026-02-12 20:18:45] 2026-02-12 19:18:45,358 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 20:18:45] 2026-02-12 19:18:45,360 [wrapper] pilotpid: 477471
[2026-02-12 20:18:45] 2026-02-12 19:18:45,362 [wrapper] Pilot exit status: 0
[2026-02-12 20:18:45] 2026-02-12 19:18:45,369 [wrapper] pandaids: 7012283976
[2026-02-12 20:18:45] 2026-02-12 19:18:45,385 [wrapper] cleanup supervisor_pilot  487582 477472
[2026-02-12 20:18:45] 2026-02-12 19:18:45,387 [wrapper] Test setup, not cleaning
[2026-02-12 20:18:45] 2026-02-12 19:18:45,389 [wrapper] apfmon messages muted
[2026-02-12 20:18:45] 2026-02-12 19:18:45,392 [wrapper] ==== wrapper stdout END ====
[2026-02-12 20:18:45] 2026-02-12 19:18:45,394 [wrapper] ==== wrapper stderr END ====
[2026-02-12 20:18:45]  *** Error codes and diagnostics ***
[2026-02-12 20:18:45]     "exeErrorCode": 0,
[2026-02-12 20:18:45]     "exeErrorDiag": "",
[2026-02-12 20:18:45]     "pilotErrorCode": 0,
[2026-02-12 20:18:45]     "pilotErrorDiag": "",
[2026-02-12 20:18:45]  *** Listing of results directory ***
[2026-02-12 20:18:45] total 943984
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc      5111 Feb 11 16:25 queuedata.json
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc    584627 Feb 11 16:25 pilot3.tar.gz
[2026-02-12 20:18:45] -rwx------ 1 boinc boinc     36322 Feb 11 16:25 runpilot2-wrapper.sh
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc       100 Feb 12 18:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 20:18:45] -rwxr-xr-x 1 boinc boinc      7986 Feb 12 18:16 run_atlas
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc       105 Feb 12 18:16 job.xml
[2026-02-12 20:18:45] -rw-r--r-- 2 boinc boinc 676299414 Feb 12 18:16 EVNT.48431094._000735.pool.root.1
[2026-02-12 20:18:45] -rw-r--r-- 2 boinc boinc    597964 Feb 12 18:16 input.tar.gz
[2026-02-12 20:18:45] -rw-r--r-- 2 boinc boinc     15845 Feb 12 18:16 start_atlas.sh
[2026-02-12 20:18:45] drwxrwx--x 2 boinc boinc      4096 Feb 12 18:16 shared
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc         0 Feb 12 18:16 boinc_setup_complete
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc      6441 Feb 12 18:16 init_data.xml
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc         0 Feb 12 18:16 boinc_lockfile
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc      2553 Feb 12 18:16 pandaJob.out
[2026-02-12 20:18:45] -rw------- 1 boinc boinc    999474 Feb 12 18:16 agis_schedconf.cvmfs.json
[2026-02-12 20:18:45] -rw------- 1 boinc boinc   1512955 Feb 12 18:16 agis_ddmendpoints.agis.ALL.json
[2026-02-12 20:18:45] -rw------- 1 boinc boinc       428 Feb 12 18:16 workernode_map.json
[2026-02-12 20:18:45] drwx------ 5 boinc boinc      4096 Feb 12 18:16 pilot3
[2026-02-12 20:18:45] -rw------- 1 boinc boinc        95 Feb 12 20:17 pilot_heartbeat.json
[2026-02-12 20:18:45] -rw------- 1 boinc boinc 283767994 Feb 12 20:17 HITS.48431096._031408.pool.root.1
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc       530 Feb 12 20:17 boinc_task_state.xml
[2026-02-12 20:18:45] -rw------- 1 boinc boinc      1022 Feb 12 20:17 memory_monitor_summary.json
[2026-02-12 20:18:45] -rw------- 1 boinc boinc    272953 Feb 12 20:17 log.48431096._031408.job.log.tgz.1
[2026-02-12 20:18:45] -rw------- 1 boinc boinc      6307 Feb 12 20:17 heartbeat.json
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc        27 Feb 12 20:18 wrapper_checkpoint.txt
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc      8192 Feb 12 20:18 boinc_mmap_file
[2026-02-12 20:18:45] -rw------- 1 boinc boinc      4554 Feb 12 20:18 pilotlog.txt
[2026-02-12 20:18:45] -rw------- 1 boinc boinc   1047135 Feb 12 20:18 log.48431096._031408.job.log.1
[2026-02-12 20:18:45] -rw------- 1 boinc boinc       357 Feb 12 20:18 output.list
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc       620 Feb 12 20:18 runtime_log
[2026-02-12 20:18:45] -rw------- 1 boinc boinc   1341440 Feb 12 20:18 result.tar.gz
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc      8901 Feb 12 20:18 runtime_log.err
[2026-02-12 20:18:45] -rw------- 1 boinc boinc       658 Feb 12 20:18 oKBMDmgGRA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmoQkKDmkwCdHn.diag
[2026-02-12 20:18:45] -rw-r--r-- 1 boinc boinc     12475 Feb 12 20:18 stderr.txt
[2026-02-12 20:18:45] HITS file was successfully produced:
[2026-02-12 20:18:45] -rw------- 1 boinc boinc 283767994 Feb 12 20:17 shared/HITS.pool.root.1
[2026-02-12 20:18:45]  *** Contents of shared directory: ***
[2026-02-12 20:18:45] total 939492
[2026-02-12 20:18:45] -rw-r--r-- 2 boinc boinc 676299414 Feb 12 18:16 ATLAS.root_0
[2026-02-12 20:18:45] -rw-r--r-- 2 boinc boinc    597964 Feb 12 18:16 input.tar.gz
[2026-02-12 20:18:45] -rw-r--r-- 2 boinc boinc     15845 Feb 12 18:16 start_atlas.sh
[2026-02-12 20:18:45] -rw------- 1 boinc boinc 283767994 Feb 12 20:17 HITS.pool.root.1
[2026-02-12 20:18:45] -rw------- 1 boinc boinc   1341440 Feb 12 20:18 result.tar.gz
20:18:47 (473425): run_atlas exited; CPU time 21052.436117
20:18:47 (473425): called boinc_finish(0)

</stderr_txt>
]]>

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