Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:30:10 (2554980): wrapper (7.7.26015): starting
14:30:10 (2554980): wrapper: running run_atlas (--nthreads 2)
[2026-02-12 14:30:10] Arguments: --nthreads 2
[2026-02-12 14:30:10] Threads: 2
[2026-02-12 14:30:10] Checking for CVMFS
[2026-02-12 14:30:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 14:30:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 14:30:10] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 14:30:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 14:30:10] 2.9.2.0 1716568 9040 62148 156157 3 50 23900762 36864000 0 130560 0 2500015 99.976 312543 5606 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-12 14:30:10] CVMFS is ok
[2026-02-12 14:30:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 14:30:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 14:30:10] Further information can be found at the LHC@home message board.
[2026-02-12 14:30:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 14:30:10] Checking for apptainer binary...
[2026-02-12 14:30:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 14:30:10] Running /usr/bin/apptainer --version
[2026-02-12 14:30:10] apptainer version 1.4.1-1.1
[2026-02-12 14:30:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 14:30:10] madmaxA275
[2026-02-12 14:30:10] apptainer works
[2026-02-12 14:30:10] Set ATHENA_PROC_NUMBER=2
[2026-02-12 14:30:10] Set ATHENA_CORE_NUMBER=2
[2026-02-12 14:30:11] Starting ATLAS job with PandaID=7000313859
[2026-02-12 14:30:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 16:38:50]  *** The last 200 lines of the pilot log: ***
[2026-02-12 16:38:50] 2026-02-12 15:37:57,850 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 16:38:50] 2026-02-12 15:37:57,851 | INFO     | collected zombie processes
[2026-02-12 16:38:50] 2026-02-12 15:37:57,851 | INFO     | will attempt to kill all subprocesses of pid=2563416
[2026-02-12 16:38:50] 2026-02-12 15:37:57,884 | INFO     | process IDs to be killed: [2563416] (in reverse order)
[2026-02-12 16:38:50] 2026-02-12 15:37:57,904 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 16:38:50] 2026-02-12 15:37:57,904 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 16:38:50] 2026-02-12 15:37:57,905 | INFO     | did not find any defunct processes belonging to 2563416
[2026-02-12 16:38:50] 2026-02-12 15:37:57,906 | INFO     | did not find any defunct processes belonging to 2563416
[2026-02-12 16:38:50] 2026-02-12 15:37:57,906 | INFO     | ready for new job
[2026-02-12 16:38:50] 2026-02-12 15:37:57,906 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 16:38:50] 2026-02-12 15:37:57,906 | INFO     | **************************************
[2026-02-12 16:38:50] 2026-02-12 15:37:57,906 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-12 16:38:50] 2026-02-12 15:37:57,906 | INFO     | **************************************
[2026-02-12 16:38:50] 2026-02-12 15:37:57,906 | INFO     | 
[2026-02-12 16:38:50] 2026-02-12 15:37:57,907 | INFO     | architecture information:
[2026-02-12 16:38:50] 2026-02-12 15:37:57,907 | INFO     | executing command: cat /etc/os-release
[2026-02-12 16:38:50] 2026-02-12 15:37:57,915 | INFO     | cat /etc/os-release:
[2026-02-12 16:38:50] NAME="CentOS Linux"
[2026-02-12 16:38:50] VERSION="7 (Core)"
[2026-02-12 16:38:50] ID="centos"
[2026-02-12 16:38:50] ID_LIKE="rhel fedora"
[2026-02-12 16:38:50] VERSION_ID="7"
[2026-02-12 16:38:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 16:38:50] ANSI_COLOR="0;31"
[2026-02-12 16:38:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 16:38:50] HOME_URL="https://www.centos.org/"
[2026-02-12 16:38:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 16:38:50] 
[2026-02-12 16:38:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 16:38:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 16:38:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 16:38:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 16:38:50] 
[2026-02-12 16:38:50] 2026-02-12 15:37:57,915 | INFO     | **************************************
[2026-02-12 16:38:50] 2026-02-12 15:37:58,418 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-12 16:38:50] 2026-02-12 15:37:58,430 | INFO     | sufficient remaining disk space (258562064384 B)
[2026-02-12 16:38:50] 2026-02-12 15:37:58,431 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 16:38:50] 2026-02-12 15:37:58,431 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 16:38:50] 2026-02-12 15:37:58,431 | INFO     | update_server=False
[2026-02-12 16:38:50] 2026-02-12 15:37:58,431 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 16:38:50] 2026-02-12 15:37:58,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 16:38:50] 2026-02-12 15:37:58,431 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 16:38:50] 2026-02-12 15:37:58,440 | INFO     | all data control threads have been joined
[2026-02-12 16:38:50] 2026-02-12 15:37:58,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 16:38:50] 2026-02-12 15:37:58,775 | INFO     | aborting loop
[2026-02-12 16:38:50] 2026-02-12 15:37:59,078 | INFO     | all payload control threads have been joined
[2026-02-12 16:38:50] 2026-02-12 15:37:59,436 | INFO     | [job] retrieve thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:37:59,437 | INFO     | [job] queue monitor thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:37:59,445 | INFO     | [data] control thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:37:59,767 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 16:38:50] 2026-02-12 15:37:59,779 | INFO     | [payload] failed_post thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:37:59,780 | INFO     | [job] job monitor thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:37:59,904 | INFO     | all job control threads have been joined
[2026-02-12 16:38:50] 2026-02-12 15:37:59,906 | INFO     | [job] validate thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:38:00,044 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:38:00,084 | INFO     | [payload] control thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:38:00,114 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:38:00,152 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:38:00,264 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:38:00,340 | INFO     | [data] copytool_in thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:38:00,578 | INFO     | [payload] validate_post thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:38:00,911 | INFO     | [job] control thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:38:01,773 | INFO     | [data] copytool_out thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:38:02,438 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 16:38:50] 2026-02-12 15:38:28,045 | INFO     | PID=2559009 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-12 16:38:50] 2026-02-12 15:38:28,045 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 16:38:50] 2026-02-12 15:38:28,045 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 16:38:50] 2026-02-12 15:38:28,045 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 16:38:50] 2026-02-12 15:38:43,760 | INFO     | [monitor] cgroup control has ended
[2026-02-12 16:38:50] 2026-02-12 15:38:44,141 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139723900438336)>', '<ExcThread(monitor, started 139723112695552)>']
[2026-02-12 16:38:50] 2026-02-12 15:38:45,130 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 16:38:50] 2026-02-12 15:38:45,130 | INFO     | [monitor] control thread has ended
[2026-02-12 16:38:50] 2026-02-12 15:38:49,161 | INFO     | all workflow threads have been joined
[2026-02-12 16:38:50] 2026-02-12 15:38:49,162 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 16:38:50] 2026-02-12 15:38:49,163 | INFO     | traces error code: 0
[2026-02-12 16:38:50] 2026-02-12 15:38:49,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 16:38:50] 2026-02-12 15:38:49,207 [wrapper] ==== pilot stdout END ====
[2026-02-12 16:38:50] 2026-02-12 15:38:49,210 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 16:38:50] 2026-02-12 15:38:49,212 [wrapper] pilotpid: 2559009
[2026-02-12 16:38:50] 2026-02-12 15:38:49,214 [wrapper] Pilot exit status: 0
[2026-02-12 16:38:50] 2026-02-12 15:38:49,220 [wrapper] pandaids: 7000313859
[2026-02-12 16:38:50] 2026-02-12 15:38:49,231 [wrapper] cleanup supervisor_pilot 2568283 2559010
[2026-02-12 16:38:50] 2026-02-12 15:38:49,233 [wrapper] Test setup, not cleaning
[2026-02-12 16:38:50] 2026-02-12 15:38:49,235 [wrapper] apfmon messages muted
[2026-02-12 16:38:50] 2026-02-12 15:38:49,237 [wrapper] ==== wrapper stdout END ====
[2026-02-12 16:38:50] 2026-02-12 15:38:49,238 [wrapper] ==== wrapper stderr END ====
[2026-02-12 16:38:50]  *** Error codes and diagnostics ***
[2026-02-12 16:38:50]     "exeErrorCode": 0,
[2026-02-12 16:38:50]     "exeErrorDiag": "",
[2026-02-12 16:38:50]     "pilotErrorCode": 0,
[2026-02-12 16:38:50]     "pilotErrorDiag": "",
[2026-02-12 16:38:50]  *** Listing of results directory ***
[2026-02-12 16:38:50] total 665496
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc      5111 Feb  3 22:56 queuedata.json
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc    584422 Feb  3 22:56 pilot3.tar.gz
[2026-02-12 16:38:50] -rwx------ 1 boinc boinc     36322 Feb  3 22:56 runpilot2-wrapper.sh
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc       100 Feb 12 14:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 16:38:50] -rwxr-xr-x 1 boinc boinc      7986 Feb 12 14:30 run_atlas
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc       105 Feb 12 14:30 job.xml
[2026-02-12 16:38:50] -rw-r--r-- 2 boinc boinc 493760363 Feb 12 14:30 EVNT.48317929._000300.pool.root.1
[2026-02-12 16:38:50] drwxrwx--x 2 boinc boinc      4096 Feb 12 14:30 shared
[2026-02-12 16:38:50] -rw-r--r-- 2 boinc boinc    597759 Feb 12 14:30 input.tar.gz
[2026-02-12 16:38:50] -rw-r--r-- 2 boinc boinc     15845 Feb 12 14:30 start_atlas.sh
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc         0 Feb 12 14:30 boinc_setup_complete
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc      6208 Feb 12 14:30 init_data.xml
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc         0 Feb 12 14:30 boinc_lockfile
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc      2512 Feb 12 14:30 pandaJob.out
[2026-02-12 16:38:50] -rw------- 1 boinc boinc   1000167 Feb 12 14:30 agis_schedconf.cvmfs.json
[2026-02-12 16:38:50] -rw------- 1 boinc boinc   1512955 Feb 12 14:30 agis_ddmendpoints.agis.ALL.json
[2026-02-12 16:38:50] -rw------- 1 boinc boinc       423 Feb 12 14:30 workernode_map.json
[2026-02-12 16:38:50] drwx------ 5 boinc boinc      4096 Feb 12 14:30 pilot3
[2026-02-12 16:38:50] -rw------- 1 boinc boinc 181043017 Feb 12 16:37 HITS.48317931._016481.pool.root.1
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc       530 Feb 12 16:37 boinc_task_state.xml
[2026-02-12 16:38:50] -rw------- 1 boinc boinc      1015 Feb 12 16:37 memory_monitor_summary.json
[2026-02-12 16:38:50] -rw------- 1 boinc boinc    273862 Feb 12 16:37 log.48317931._016481.job.log.tgz.1
[2026-02-12 16:38:50] -rw------- 1 boinc boinc      6308 Feb 12 16:37 heartbeat.json
[2026-02-12 16:38:50] -rw------- 1 boinc boinc        95 Feb 12 16:38 pilot_heartbeat.json
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc      8192 Feb 12 16:38 boinc_mmap_file
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc        27 Feb 12 16:38 wrapper_checkpoint.txt
[2026-02-12 16:38:50] -rw------- 1 boinc boinc      4748 Feb 12 16:38 pilotlog.txt
[2026-02-12 16:38:50] -rw------- 1 boinc boinc   1097897 Feb 12 16:38 log.48317931._016481.job.log.1
[2026-02-12 16:38:50] -rw------- 1 boinc boinc       357 Feb 12 16:38 output.list
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc       620 Feb 12 16:38 runtime_log
[2026-02-12 16:38:50] -rw------- 1 boinc boinc   1392640 Feb 12 16:38 result.tar.gz
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc      8916 Feb 12 16:38 runtime_log.err
[2026-02-12 16:38:50] -rw------- 1 boinc boinc       661 Feb 12 16:38 412KDmzYd78n9Rq4apOajLDm4fhM0noT9bVooX4SDmAUVKDmNpbrZn.diag
[2026-02-12 16:38:50] -rw-r--r-- 1 boinc boinc     10415 Feb 12 16:38 stderr.txt
[2026-02-12 16:38:50] HITS file was successfully produced:
[2026-02-12 16:38:50] -rw------- 1 boinc boinc 181043017 Feb 12 16:37 shared/HITS.pool.root.1
[2026-02-12 16:38:50]  *** Contents of shared directory: ***
[2026-02-12 16:38:50] total 660956
[2026-02-12 16:38:50] -rw-r--r-- 2 boinc boinc 493760363 Feb 12 14:30 ATLAS.root_0
[2026-02-12 16:38:50] -rw-r--r-- 2 boinc boinc    597759 Feb 12 14:30 input.tar.gz
[2026-02-12 16:38:50] -rw-r--r-- 2 boinc boinc     15845 Feb 12 14:30 start_atlas.sh
[2026-02-12 16:38:50] -rw------- 1 boinc boinc 181043017 Feb 12 16:37 HITS.pool.root.1
[2026-02-12 16:38:50] -rw------- 1 boinc boinc   1392640 Feb 12 16:38 result.tar.gz
16:38:51 (2554980): run_atlas exited; CPU time 14848.954737
16:38:51 (2554980): called boinc_finish(0)

</stderr_txt>
]]>

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