Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:33:48 (1175769): wrapper (7.7.26015): starting
13:33:48 (1175769): wrapper: running run_atlas (--nthreads 4)
[2026-02-12 13:33:48] Arguments: --nthreads 4
[2026-02-12 13:33:48] Threads: 4
[2026-02-12 13:33:48] Checking for CVMFS
[2026-02-12 13:33:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 13:33:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 13:33:49] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 13:33:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 13:33:49] 2.9.2.0 3652207 9114 100292 156156 2 49 25079759 36864000 0 130560 0 4819531 99.987 312454 6636 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-12 13:33:49] CVMFS is ok
[2026-02-12 13:33:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 13:33:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 13:33:49] Further information can be found at the LHC@home message board.
[2026-02-12 13:33:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 13:33:49] Checking for apptainer binary...
[2026-02-12 13:33:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 13:33:49] Running /usr/bin/apptainer --version
[2026-02-12 13:33:49] apptainer version 1.4.1-1.1
[2026-02-12 13:33:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 13:33:49] magicA244a
[2026-02-12 13:33:49] apptainer works
[2026-02-12 13:33:49] Set ATHENA_PROC_NUMBER=4
[2026-02-12 13:33:49] Set ATHENA_CORE_NUMBER=4
[2026-02-12 13:33:49] Starting ATLAS job with PandaID=7012637264
[2026-02-12 13:33:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 15:05:12]  *** The last 200 lines of the pilot log: ***
[2026-02-12 15:05:12] 2026-02-12 14:04:37,078 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 15:05:12] 2026-02-12 14:04:37,078 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 15:05:12] 2026-02-12 14:04:37,078 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 15:05:12] 2026-02-12 14:04:37,078 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 15:05:12] 2026-02-12 14:04:37,078 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 15:05:12] 2026-02-12 14:04:37,078 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 15:05:12] 2026-02-12 14:04:37,078 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 15:05:12] 2026-02-12 14:04:37,079 | INFO     | job 7012637264 has completed (purged errors)
[2026-02-12 15:05:12] 2026-02-12 14:04:37,079 | INFO     | overall cleanup function is called
[2026-02-12 15:05:12] 2026-02-12 14:04:38,085 | INFO     | --- collectZombieJob: --- 10, [1184363]
[2026-02-12 15:05:12] 2026-02-12 14:04:38,086 | INFO     | zombie collector waiting for pid 1184363
[2026-02-12 15:05:12] 2026-02-12 14:04:38,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 15:05:12] 2026-02-12 14:04:38,086 | INFO     | collected zombie processes
[2026-02-12 15:05:12] 2026-02-12 14:04:38,086 | INFO     | will attempt to kill all subprocesses of pid=1184363
[2026-02-12 15:05:12] 2026-02-12 14:04:38,130 | INFO     | process IDs to be killed: [1184363] (in reverse order)
[2026-02-12 15:05:12] 2026-02-12 14:04:38,157 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 15:05:12] 2026-02-12 14:04:38,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 15:05:12] 2026-02-12 14:04:38,158 | INFO     | did not find any defunct processes belonging to 1184363
[2026-02-12 15:05:12] 2026-02-12 14:04:38,159 | INFO     | did not find any defunct processes belonging to 1184363
[2026-02-12 15:05:12] 2026-02-12 14:04:38,159 | INFO     | ready for new job
[2026-02-12 15:05:12] 2026-02-12 14:04:38,159 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 15:05:12] 2026-02-12 14:04:38,160 | INFO     | **************************************
[2026-02-12 15:05:12] 2026-02-12 14:04:38,160 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 15:05:12] 2026-02-12 14:04:38,160 | INFO     | **************************************
[2026-02-12 15:05:12] 2026-02-12 14:04:38,160 | INFO     | 
[2026-02-12 15:05:12] 2026-02-12 14:04:38,161 | INFO     | architecture information:
[2026-02-12 15:05:12] 2026-02-12 14:04:38,161 | INFO     | executing command: cat /etc/os-release
[2026-02-12 15:05:12] 2026-02-12 14:04:38,170 | INFO     | cat /etc/os-release:
[2026-02-12 15:05:12] NAME="CentOS Linux"
[2026-02-12 15:05:12] VERSION="7 (Core)"
[2026-02-12 15:05:12] ID="centos"
[2026-02-12 15:05:12] ID_LIKE="rhel fedora"
[2026-02-12 15:05:12] VERSION_ID="7"
[2026-02-12 15:05:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 15:05:12] ANSI_COLOR="0;31"
[2026-02-12 15:05:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 15:05:12] HOME_URL="https://www.centos.org/"
[2026-02-12 15:05:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 15:05:12] 
[2026-02-12 15:05:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 15:05:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 15:05:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 15:05:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 15:05:12] 
[2026-02-12 15:05:12] 2026-02-12 14:04:38,170 | INFO     | **************************************
[2026-02-12 15:05:12] 2026-02-12 14:04:38,673 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-12 15:05:12] 2026-02-12 14:04:38,686 | INFO     | sufficient remaining disk space (330404200448 B)
[2026-02-12 15:05:12] 2026-02-12 14:04:38,686 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 15:05:12] 2026-02-12 14:04:38,686 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 15:05:12] 2026-02-12 14:04:38,686 | INFO     | update_server=False
[2026-02-12 15:05:12] 2026-02-12 14:04:38,686 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 15:05:12] 2026-02-12 14:04:38,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 15:05:12] 2026-02-12 14:04:38,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 15:05:12] 2026-02-12 14:04:39,114 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-12 15:05:12] 2026-02-12 14:04:39,114 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-12 15:05:12] 2026-02-12 14:04:39,114 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 15:05:12] 2026-02-12 14:04:39,114 | INFO     | will abort loop
[2026-02-12 15:05:12] 2026-02-12 14:04:39,192 | INFO     | all job control threads have been joined
[2026-02-12 15:05:12] 2026-02-12 14:04:39,495 | INFO     | job.realtimelogging is not enabled
[2026-02-12 15:05:12] 2026-02-12 14:04:39,692 | INFO     | [job] retrieve thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:39,692 | INFO     | [job] queue monitor thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:39,779 | INFO     | all data control threads have been joined
[2026-02-12 15:05:12] 2026-02-12 14:04:39,895 | INFO     | all payload control threads have been joined
[2026-02-12 15:05:12] 2026-02-12 14:04:39,952 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 15:05:12] 2026-02-12 14:04:40,120 | INFO     | [job] job monitor thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:40,198 | INFO     | [job] control thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:40,241 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:40,247 | INFO     | [job] validate thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:40,283 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:40,284 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:40,444 | INFO     | [data] copytool_in thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:40,463 | INFO     | [payload] validate_post thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:40,501 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:40,785 | INFO     | [data] control thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:40,901 | INFO     | [payload] control thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:41,193 | INFO     | [payload] failed_post thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:41,959 | INFO     | [data] copytool_out thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:04:42,694 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 15:05:12] 2026-02-12 14:05:05,896 | INFO     | [monitor] cgroup control has ended
[2026-02-12 15:05:12] 2026-02-12 14:05:07,030 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140691237697344)>', '<ExcThread(monitor, started 140690881230592)>']
[2026-02-12 15:05:12] 2026-02-12 14:05:09,526 | INFO     | PID=1179874 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-12 15:05:12] 2026-02-12 14:05:09,526 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 15:05:12] 2026-02-12 14:05:09,526 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 15:05:12] 2026-02-12 14:05:09,526 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 15:05:12] 2026-02-12 14:05:09,526 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 15:05:12] 2026-02-12 14:05:09,526 | INFO     | [monitor] control thread has ended
[2026-02-12 15:05:12] 2026-02-12 14:05:12,056 | INFO     | all workflow threads have been joined
[2026-02-12 15:05:12] 2026-02-12 14:05:12,056 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 15:05:12] 2026-02-12 14:05:12,056 | INFO     | traces error code: 0
[2026-02-12 15:05:12] 2026-02-12 14:05:12,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 15:05:12] 2026-02-12 14:05:12,109 [wrapper] ==== pilot stdout END ====
[2026-02-12 15:05:12] 2026-02-12 14:05:12,112 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 15:05:12] 2026-02-12 14:05:12,114 [wrapper] pilotpid: 1179874
[2026-02-12 15:05:12] 2026-02-12 14:05:12,116 [wrapper] Pilot exit status: 0
[2026-02-12 15:05:12] 2026-02-12 14:05:12,124 [wrapper] pandaids: 7012637264
[2026-02-12 15:05:12] 2026-02-12 14:05:12,142 [wrapper] cleanup supervisor_pilot 1189714 1179875
[2026-02-12 15:05:12] 2026-02-12 14:05:12,144 [wrapper] Test setup, not cleaning
[2026-02-12 15:05:12] 2026-02-12 14:05:12,147 [wrapper] apfmon messages muted
[2026-02-12 15:05:12] 2026-02-12 14:05:12,149 [wrapper] ==== wrapper stdout END ====
[2026-02-12 15:05:12] 2026-02-12 14:05:12,152 [wrapper] ==== wrapper stderr END ====
[2026-02-12 15:05:12]  *** Error codes and diagnostics ***
[2026-02-12 15:05:12]     "exeErrorCode": 0,
[2026-02-12 15:05:12]     "exeErrorDiag": "",
[2026-02-12 15:05:12]     "pilotErrorCode": 0,
[2026-02-12 15:05:12]     "pilotErrorDiag": "",
[2026-02-12 15:05:12]  *** Listing of results directory ***
[2026-02-12 15:05:12] total 948064
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc    584627 Feb 11 18:45 pilot3.tar.gz
[2026-02-12 15:05:12] -rwx------ 1 boinc boinc     36322 Feb 11 18:46 runpilot2-wrapper.sh
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc      5111 Feb 11 18:48 queuedata.json
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc       100 Feb 12 13:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 15:05:12] -rwxr-xr-x 1 boinc boinc      7986 Feb 12 13:33 run_atlas
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc       105 Feb 12 13:33 job.xml
[2026-02-12 15:05:12] -rw-r--r-- 2 boinc boinc 683613159 Feb 12 13:33 EVNT.48431094._000071.pool.root.1
[2026-02-12 15:05:12] -rw-r--r-- 2 boinc boinc    597948 Feb 12 13:33 input.tar.gz
[2026-02-12 15:05:12] -rw-r--r-- 2 boinc boinc     15845 Feb 12 13:33 start_atlas.sh
[2026-02-12 15:05:12] drwxrwx--x 2 boinc boinc      4096 Feb 12 13:33 shared
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc         0 Feb 12 13:33 boinc_setup_complete
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc      6438 Feb 12 13:33 init_data.xml
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc         0 Feb 12 13:33 boinc_lockfile
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc      2555 Feb 12 13:33 pandaJob.out
[2026-02-12 15:05:12] -rw------- 1 boinc boinc   1000167 Feb 12 13:33 agis_schedconf.cvmfs.json
[2026-02-12 15:05:12] -rw------- 1 boinc boinc   1512955 Feb 12 13:33 agis_ddmendpoints.agis.ALL.json
[2026-02-12 15:05:12] -rw------- 1 boinc boinc       419 Feb 12 13:33 workernode_map.json
[2026-02-12 15:05:12] drwx------ 5 boinc boinc      4096 Feb 12 13:33 pilot3
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc       530 Feb 12 15:04 boinc_task_state.xml
[2026-02-12 15:05:12] -rw------- 1 boinc boinc 281145782 Feb 12 15:04 HITS.48431096._033588.pool.root.1
[2026-02-12 15:05:12] -rw------- 1 boinc boinc        95 Feb 12 15:04 pilot_heartbeat.json
[2026-02-12 15:05:12] -rw------- 1 boinc boinc      1020 Feb 12 15:04 memory_monitor_summary.json
[2026-02-12 15:05:12] -rw------- 1 boinc boinc    275752 Feb 12 15:04 log.48431096._033588.job.log.tgz.1
[2026-02-12 15:05:12] -rw------- 1 boinc boinc      6307 Feb 12 15:04 heartbeat.json
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc      8192 Feb 12 15:05 boinc_mmap_file
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc        27 Feb 12 15:05 wrapper_checkpoint.txt
[2026-02-12 15:05:12] -rw------- 1 boinc boinc      5006 Feb 12 15:05 pilotlog.txt
[2026-02-12 15:05:12] -rw------- 1 boinc boinc    793748 Feb 12 15:05 log.48431096._033588.job.log.1
[2026-02-12 15:05:12] -rw------- 1 boinc boinc       357 Feb 12 15:05 output.list
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc       620 Feb 12 15:05 runtime_log
[2026-02-12 15:05:12] -rw------- 1 boinc boinc   1085440 Feb 12 15:05 result.tar.gz
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc      8916 Feb 12 15:05 runtime_log.err
[2026-02-12 15:05:12] -rw------- 1 boinc boinc       661 Feb 12 15:05 HBTLDmiTTA9n9Rq4apOajLDm4fhM0noT9bVooX4SDmTsjKDmV7CbZm.diag
[2026-02-12 15:05:12] -rw-r--r-- 1 boinc boinc     11846 Feb 12 15:05 stderr.txt
[2026-02-12 15:05:12] HITS file was successfully produced:
[2026-02-12 15:05:12] -rw------- 1 boinc boinc 281145782 Feb 12 15:04 shared/HITS.pool.root.1
[2026-02-12 15:05:12]  *** Contents of shared directory: ***
[2026-02-12 15:05:12] total 943820
[2026-02-12 15:05:12] -rw-r--r-- 2 boinc boinc 683613159 Feb 12 13:33 ATLAS.root_0
[2026-02-12 15:05:12] -rw-r--r-- 2 boinc boinc    597948 Feb 12 13:33 input.tar.gz
[2026-02-12 15:05:12] -rw-r--r-- 2 boinc boinc     15845 Feb 12 13:33 start_atlas.sh
[2026-02-12 15:05:12] -rw------- 1 boinc boinc 281145782 Feb 12 15:04 HITS.pool.root.1
[2026-02-12 15:05:12] -rw------- 1 boinc boinc   1085440 Feb 12 15:05 result.tar.gz
15:05:13 (1175769): run_atlas exited; CPU time 20726.856154
15:05:13 (1175769): called boinc_finish(0)

</stderr_txt>
]]>

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