Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:59:50 (29410): wrapper (7.7.26015): starting
18:59:50 (29410): wrapper: running run_atlas (--nthreads 12)
[2026-02-11 18:59:50] Arguments: --nthreads 12
[2026-02-11 18:59:50] Threads: 12
[2026-02-11 18:59:50] Checking for CVMFS
[2026-02-11 18:59:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-11 18:59:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-11 18:59:50] Running cvmfs_config stat atlas.cern.ch
[2026-02-11 18:59:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-11 18:59:51] 2.11.2.0 2945 399253 99504 156133 1 52 17781121 20275201 1 130560 2 173268024 99.948 24160445 17848 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-11 18:59:51] CVMFS is ok
[2026-02-11 18:59:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-11 18:59:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-11 18:59:51] Further information can be found at the LHC@home message board.
[2026-02-11 18:59:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-11 18:59:51] Checking for apptainer binary...
[2026-02-11 18:59:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-11 18:59:51] Running /usr/bin/apptainer --version
[2026-02-11 18:59:51] apptainer version 1.3.2-1.el7
[2026-02-11 18:59:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-11 18:59:52] c-205-2.aglt2.org
[2026-02-11 18:59:52] apptainer works
[2026-02-11 18:59:52] Set ATHENA_PROC_NUMBER=12
[2026-02-11 18:59:52] Set ATHENA_CORE_NUMBER=12
[2026-02-11 18:59:52] Starting ATLAS job with PandaID=7012637280
[2026-02-11 18:59:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:47:39 (20939): wrapper (7.7.26015): starting
19:47:39 (20939): wrapper: running run_atlas (--nthreads 12)
[2026-02-11 19:47:39] Arguments: --nthreads 12
[2026-02-11 19:47:39] Threads: 12
[2026-02-11 19:47:39] This job has been restarted, cleaning up previous attempt
[2026-02-11 19:47:39] Checking for CVMFS
[2026-02-11 19:47:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-11 19:47:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-11 19:47:39] Running cvmfs_config stat atlas.cern.ch
[2026-02-11 19:47:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-11 19:47:39] 2.11.2.0 2945 399301 100764 156134 1 11 17862676 20275200 1 130560 2 173318770 99.948 24162221 17848 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-11 19:47:39] CVMFS is ok
[2026-02-11 19:47:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-11 19:47:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-11 19:47:39] Further information can be found at the LHC@home message board.
[2026-02-11 19:47:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-11 19:47:39] Checking for apptainer binary...
[2026-02-11 19:47:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-11 19:47:39] Running /usr/bin/apptainer --version
[2026-02-11 19:47:39] apptainer version 1.3.2-1.el7
[2026-02-11 19:47:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-11 19:47:41] c-205-2.aglt2.org
[2026-02-11 19:47:41] apptainer works
[2026-02-11 19:47:41] Set ATHENA_PROC_NUMBER=12
[2026-02-11 19:47:41] Set ATHENA_CORE_NUMBER=12
[2026-02-11 19:47:41] Starting ATLAS job with PandaID=7012637280
[2026-02-11 19:47:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-11 21:34:11]  *** The last 200 lines of the pilot log: ***
[2026-02-11 21:34:11] 2026-02-12 02:33:28,340 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7012637280/memory_monitor_summary.json (trf name=prmon)
[2026-02-11 21:34:11] 2026-02-12 02:33:28,341 | INFO     | extracted standard info from prmon json
[2026-02-11 21:34:11] 2026-02-12 02:33:28,341 | INFO     | extracted standard memory fields from prmon json
[2026-02-11 21:34:11] 2026-02-12 02:33:28,341 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-11 21:34:11] 2026-02-12 02:33:28,341 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-11 21:34:11] 2026-02-12 02:33:28,341 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-11 21:34:11] 2026-02-12 02:33:28,343 | INFO     | fitting pss+swap vs Time
[2026-02-11 21:34:11] 2026-02-12 02:33:28,343 | INFO     | sum of square deviations: 348769330.0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,344 | INFO     | sum of deviations: -4241270890.9999995
[2026-02-11 21:34:11] 2026-02-12 02:33:28,344 | INFO     | mean x: 1770860442.5
[2026-02-11 21:34:11] 2026-02-12 02:33:28,344 | INFO     | mean y: 2754556.019230769
[2026-02-11 21:34:11] 2026-02-12 02:33:28,344 | INFO     | intersect: 21537614994.575073
[2026-02-11 21:34:11] 2026-02-12 02:33:28,344 | INFO     | chi2: 2.342095648370336
[2026-02-11 21:34:11] 2026-02-12 02:33:28,345 | INFO     | sum of square deviations: 300842850.0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,345 | INFO     | sum of deviations: 3653704678.000001
[2026-02-11 21:34:11] 2026-02-12 02:33:28,345 | INFO     | mean x: 1770860290.0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,345 | INFO     | mean y: 2778739.101010101
[2026-02-11 21:34:11] 2026-02-12 02:33:28,345 | INFO     | intersect: -21504132678.795204
[2026-02-11 21:34:11] 2026-02-12 02:33:28,346 | INFO     | chi2: 1.572329155250617
[2026-02-11 21:34:11] 2026-02-12 02:33:28,346 | INFO     | current chi2=1.572329155250617 (change=32.866569461214524 %)
[2026-02-11 21:34:11] 2026-02-12 02:33:28,346 | INFO     | sum of square deviations: 257521107.5
[2026-02-11 21:34:11] 2026-02-12 02:33:28,346 | INFO     | sum of deviations: 3804296903.0000024
[2026-02-11 21:34:11] 2026-02-12 02:33:28,346 | INFO     | mean x: 1770860137.5
[2026-02-11 21:34:11] 2026-02-12 02:33:28,347 | INFO     | mean y: 2779269.744680851
[2026-02-11 21:34:11] 2026-02-12 02:33:28,347 | INFO     | intersect: -26157708319.558685
[2026-02-11 21:34:11] 2026-02-12 02:33:28,347 | INFO     | chi2: 1.5756896415117967
[2026-02-11 21:34:11] 2026-02-12 02:33:28,347 | INFO     | current chi2=1.5756896415117967 (change=-0.2137266392318573 %)
[2026-02-11 21:34:11] 2026-02-12 02:33:28,347 | INFO     | right removable region: 93
[2026-02-11 21:34:11] 2026-02-12 02:33:28,347 | INFO     | sum of square deviations: 300842850.0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,348 | INFO     | sum of deviations: -21749841823.999996
[2026-02-11 21:34:11] 2026-02-12 02:33:28,348 | INFO     | mean x: 1770860595.0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,348 | INFO     | mean y: 2809192.898989899
[2026-02-11 21:34:11] 2026-02-12 02:33:28,348 | INFO     | intersect: 128029577432.87717
[2026-02-11 21:34:11] 2026-02-12 02:33:28,348 | INFO     | chi2: 0.897197448296601
[2026-02-11 21:34:11] 2026-02-12 02:33:28,349 | INFO     | current chi2=0.897197448296601 (change=61.6925359593711 %)
[2026-02-11 21:34:11] 2026-02-12 02:33:28,349 | INFO     | sum of square deviations: 257521107.5
[2026-02-11 21:34:11] 2026-02-12 02:33:28,349 | INFO     | sum of deviations: -19951663328.0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,349 | INFO     | mean x: 1770860747.5
[2026-02-11 21:34:11] 2026-02-12 02:33:28,349 | INFO     | mean y: 2802760.276595745
[2026-02-11 21:34:11] 2026-02-12 02:33:28,350 | INFO     | intersect: 137201721240.73715
[2026-02-11 21:34:11] 2026-02-12 02:33:28,350 | INFO     | chi2: 0.8946952248049037
[2026-02-11 21:34:11] 2026-02-12 02:33:28,350 | INFO     | current chi2=0.8946952248049037 (change=0.2788932911532383 %)
[2026-02-11 21:34:11] 2026-02-12 02:33:28,350 | INFO     | left removable region: 20
[2026-02-11 21:34:11] 2026-02-12 02:33:28,350 | INFO     | sum of square deviations: 120605052.0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,350 | INFO     | sum of deviations: -6429090120.0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,351 | INFO     | mean x: 1770860717.0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,351 | INFO     | mean y: 2811801.4109589043
[2026-02-11 21:34:11] 2026-02-12 02:33:28,351 | INFO     | intersect: 94402034311.26749
[2026-02-11 21:34:11] 2026-02-12 02:33:28,351 | INFO     | chi2: 0.06546312295052313
[2026-02-11 21:34:11] 2026-02-12 02:33:28,351 | INFO     | current memory leak: -53.31 B/s (using 73 data points, chi2=0.07)
[2026-02-11 21:34:11] 2026-02-12 02:33:28,351 | INFO     | could have reported an average CPU frequency of 1773 MHz (7 samples)
[2026-02-11 21:34:11] 2026-02-12 02:33:28,352 | INFO     | ..............................
[2026-02-11 21:34:11] 2026-02-12 02:33:28,352 | INFO     | . Timing measurements:
[2026-02-11 21:34:11] 2026-02-12 02:33:28,352 | INFO     | . get job = 0 s
[2026-02-11 21:34:11] 2026-02-12 02:33:28,352 | INFO     | . initial setup = 1 s
[2026-02-11 21:34:11] 2026-02-12 02:33:28,352 | INFO     | . payload setup = 7 s
[2026-02-11 21:34:11] 2026-02-12 02:33:28,352 | INFO     | . stage-in = 0 s
[2026-02-11 21:34:11] 2026-02-12 02:33:28,352 | INFO     | . payload execution = 6305 s
[2026-02-11 21:34:11] 2026-02-12 02:33:28,352 | INFO     | . stage-out = 0 s
[2026-02-11 21:34:11] 2026-02-12 02:33:28,352 | INFO     | . log creation = 0 s
[2026-02-11 21:34:11] 2026-02-12 02:33:28,352 | INFO     | ..............................
[2026-02-11 21:34:11] 2026-02-12 02:33:28,405 | INFO     | time since job start (6332s) is within the limit (349056.0s)
[2026-02-11 21:34:11] 2026-02-12 02:33:28,429 | INFO     | 
[2026-02-11 21:34:11] 2026-02-12 02:33:28,429 | INFO     | job summary report
[2026-02-11 21:34:11] 2026-02-12 02:33:28,429 | INFO     | --------------------------------------------------
[2026-02-11 21:34:11] 2026-02-12 02:33:28,429 | INFO     | PanDA job id: 7012637280
[2026-02-11 21:34:11] 2026-02-12 02:33:28,430 | INFO     | task id: 48431096
[2026-02-11 21:34:11] 2026-02-12 02:33:28,430 | INFO     | errors: (none)
[2026-02-11 21:34:11] 2026-02-12 02:33:28,430 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-11 21:34:11] 2026-02-12 02:33:28,430 | INFO     | pilot state: finished 
[2026-02-11 21:34:11] 2026-02-12 02:33:28,430 | INFO     | transexitcode: 0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,430 | INFO     | exeerrorcode: 0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,430 | INFO     | exeerrordiag: 
[2026-02-11 21:34:11] 2026-02-12 02:33:28,430 | INFO     | exitcode: 0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,430 | INFO     | exitmsg: OK
[2026-02-11 21:34:11] 2026-02-12 02:33:28,430 | INFO     | cpuconsumptiontime: 68823 s
[2026-02-11 21:34:11] 2026-02-12 02:33:28,431 | INFO     | nevents: 400
[2026-02-11 21:34:11] 2026-02-12 02:33:28,431 | INFO     | neventsw: 0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,431 | INFO     | pid: 27427
[2026-02-11 21:34:11] 2026-02-12 02:33:28,431 | INFO     | pgrp: 27427
[2026-02-11 21:34:11] 2026-02-12 02:33:28,431 | INFO     | corecount: 12
[2026-02-11 21:34:11] 2026-02-12 02:33:28,431 | INFO     | event service: False
[2026-02-11 21:34:11] 2026-02-12 02:33:28,431 | INFO     | sizes: {0: 2282155, 1: 2282215, 11: 2282243, 6316: 2309213, 6317: 2309212, 6318: 2318266, 6319: 2318450, 6321: 2318644}
[2026-02-11 21:34:11] 2026-02-12 02:33:28,431 | INFO     | --------------------------------------------------
[2026-02-11 21:34:11] 2026-02-12 02:33:28,431 | INFO     | 
[2026-02-11 21:34:11] 2026-02-12 02:33:28,431 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-11 21:34:11] 2026-02-12 02:33:28,462 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,462 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,463 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,463 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,463 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,463 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,463 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,463 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,464 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,464 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,464 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,464 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,464 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,464 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,464 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,465 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,465 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,465 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-11 21:34:11] 2026-02-12 02:33:28,465 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,465 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-11 21:34:11] 2026-02-12 02:33:28,465 | INFO     | job 7012637280 has completed (purged errors)
[2026-02-11 21:34:11] 2026-02-12 02:33:28,466 | INFO     | overall cleanup function is called
[2026-02-11 21:34:11] 2026-02-12 02:33:29,474 | INFO     | --- collectZombieJob: --- 10, [27427]
[2026-02-11 21:34:11] 2026-02-12 02:33:29,474 | INFO     | zombie collector waiting for pid 27427
[2026-02-11 21:34:11] 2026-02-12 02:33:29,475 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-11 21:34:11] 2026-02-12 02:33:29,475 | INFO     | collected zombie processes
[2026-02-11 21:34:11] 2026-02-12 02:33:29,475 | INFO     | will attempt to kill all subprocesses of pid=27427
[2026-02-11 21:34:11] 2026-02-12 02:33:29,576 | INFO     | PID=24994 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-11 21:34:11] 2026-02-12 02:33:29,615 | INFO     | process IDs to be killed: [27427] (in reverse order)
[2026-02-11 21:34:11] 2026-02-12 02:33:29,667 | WARNING  | found no corresponding commands to process id(s)
[2026-02-11 21:34:11] 2026-02-12 02:33:29,667 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-11 21:34:11] 2026-02-12 02:33:29,671 | INFO     | did not find any defunct processes belonging to 27427
[2026-02-11 21:34:11] 2026-02-12 02:33:29,673 | INFO     | did not find any defunct processes belonging to 27427
[2026-02-11 21:34:11] 2026-02-12 02:33:29,674 | INFO     | ready for new job
[2026-02-11 21:34:11] 2026-02-12 02:33:29,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-11 21:34:11] 2026-02-12 02:33:29,675 | INFO     | **************************************
[2026-02-11 21:34:11] 2026-02-12 02:33:29,675 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-11 21:34:11] 2026-02-12 02:33:29,676 | INFO     | **************************************
[2026-02-11 21:34:11] 2026-02-12 02:33:29,676 | INFO     | 
[2026-02-11 21:34:11] 2026-02-12 02:33:29,676 | INFO     | architecture information:
[2026-02-11 21:34:11] 2026-02-12 02:33:29,677 | INFO     | executing command: cat /etc/os-release
[2026-02-11 21:34:11] 2026-02-12 02:33:29,692 | INFO     | cat /etc/os-release:
[2026-02-11 21:34:11] NAME="CentOS Linux"
[2026-02-11 21:34:11] VERSION="7 (Core)"
[2026-02-11 21:34:11] ID="centos"
[2026-02-11 21:34:11] ID_LIKE="rhel fedora"
[2026-02-11 21:34:11] VERSION_ID="7"
[2026-02-11 21:34:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-11 21:34:11] ANSI_COLOR="0;31"
[2026-02-11 21:34:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-11 21:34:11] HOME_URL="https://www.centos.org/"
[2026-02-11 21:34:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-11 21:34:11] 
[2026-02-11 21:34:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-11 21:34:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-11 21:34:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-11 21:34:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-11 21:34:11] 
[2026-02-11 21:34:11] 2026-02-12 02:33:29,693 | INFO     | **************************************
[2026-02-11 21:34:11] 2026-02-12 02:33:30,196 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-11 21:34:11] 2026-02-12 02:33:30,213 | INFO     | sufficient remaining disk space (28391243776 B)
[2026-02-11 21:34:11] 2026-02-12 02:33:30,213 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-11 21:34:11] 2026-02-12 02:33:30,214 | INFO     | current server update state: UPDATING_FINAL
[2026-02-11 21:34:11] 2026-02-12 02:33:30,214 | INFO     | update_server=False
[2026-02-11 21:34:11] 2026-02-12 02:33:30,214 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-11 21:34:11] 2026-02-12 02:33:30,214 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-11 21:34:11] 2026-02-12 02:33:30,215 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-11 21:34:11] 2026-02-12 02:33:30,215 | INFO     | found 0 job(s) in 20 queues
[2026-02-11 21:34:11] 2026-02-12 02:33:30,215 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-11 21:34:11] 2026-02-12 02:33:30,216 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-11 21:34:11] 2026-02-12 02:33:30,400 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-11 21:34:11] 2026-02-12 02:33:30,400 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-11 21:34:11] 2026-02-12 02:33:30,400 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-11 21:34:11] 2026-02-12 02:33:30,400 | INFO     | will abort loop
[2026-02-11 21:34:11] 2026-02-12 02:33:30,495 | INFO     | all data control threads have been joined
[2026-02-11 21:34:11] 2026-02-12 02:33:30,554 | INFO     | all payload control threads have been joined
[2026-02-11 21:34:11] 2026-02-12 02:33:31,061 | INFO     | all job control threads have been joined
[2026-02-11 21:34:11] 2026-02-12 02:33:31,204 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-11 21:34:11] 2026-02-12 02:33:31,220 | INFO     | [job] retrieve thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:31,220 | INFO     | [job] queue monitor thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:31,406 | INFO     | [job] job monitor thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:31,500 | INFO     | [data] control thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:31,501 | INFO     | [payload] failed_post thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:31,557 | INFO     | [payload] control thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:31,771 | INFO     | [job] validate thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:31,965 | INFO     | [payload] validate_pre thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:31,998 | INFO     | [job] create_data_payload thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:32,065 | INFO     | [payload] validate_post thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:32,066 | INFO     | [job] control thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:32,170 | INFO     | [data] copytool_in thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:32,574 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-11 21:34:11] 2026-02-12 02:33:32,665 | INFO     | [payload] execute_payloads thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:33,210 | INFO     | [data] copytool_out thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:36,580 | INFO     | [data] queue_monitor thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:33:40,347 | INFO     | job.realtimelogging is not enabled
[2026-02-11 21:34:11] 2026-02-12 02:33:41,349 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-11 21:34:11] 2026-02-12 02:34:05,937 | INFO     | [monitor] cgroup control has ended
[2026-02-11 21:34:11] 2026-02-12 02:34:06,403 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140229686351680)>', '<ExcThread(monitor, started 140228635375360)>']
[2026-02-11 21:34:11] 2026-02-12 02:34:07,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-11 21:34:11] 2026-02-12 02:34:07,398 | INFO     | [monitor] control thread has ended
[2026-02-11 21:34:11] 2026-02-12 02:34:11,425 | INFO     | all workflow threads have been joined
[2026-02-11 21:34:11] 2026-02-12 02:34:11,425 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-11 21:34:11] 2026-02-12 02:34:11,425 | INFO     | traces error code: 0
[2026-02-11 21:34:11] 2026-02-12 02:34:11,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-11 21:34:11] 2026-02-12 02:34:11,512 [wrapper] ==== pilot stdout END ====
[2026-02-11 21:34:11] 2026-02-12 02:34:11,516 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-11 21:34:11] 2026-02-12 02:34:11,520 [wrapper] pilotpid: 24994
[2026-02-11 21:34:11] 2026-02-12 02:34:11,524 [wrapper] Pilot exit status: 0
[2026-02-11 21:34:11] 2026-02-12 02:34:11,540 [wrapper] pandaids: 7012637280 7012637280
[2026-02-11 21:34:11] 2026-02-12 02:34:11,581 [wrapper] cleanup supervisor_pilot 24140 24995
[2026-02-11 21:34:11] 2026-02-12 02:34:11,585 [wrapper] Test setup, not cleaning
[2026-02-11 21:34:11] 2026-02-12 02:34:11,589 [wrapper] apfmon messages muted
[2026-02-11 21:34:11] 2026-02-12 02:34:11,593 [wrapper] ==== wrapper stdout END ====
[2026-02-11 21:34:11] 2026-02-12 02:34:11,597 [wrapper] ==== wrapper stderr END ====
[2026-02-11 21:34:11]  *** Error codes and diagnostics ***
[2026-02-11 21:34:11]     "exeErrorCode": 0,
[2026-02-11 21:34:11]     "exeErrorDiag": "",
[2026-02-11 21:34:11]     "pilotErrorCode": 0,
[2026-02-11 21:34:11]     "pilotErrorDiag": "",
[2026-02-11 21:34:11]  *** Listing of results directory ***
[2026-02-11 21:34:11] total 1616304
[2026-02-11 21:34:11] drwx------ 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-02-11 21:34:11] -rw-r--r-- 1 boincer umatlas    584627 Feb 11 12:45 pilot3.tar.gz
[2026-02-11 21:34:11] -rwx------ 1 boincer umatlas     36322 Feb 11 12:46 runpilot2-wrapper.sh
[2026-02-11 21:34:11] -rw-r--r-- 1 boincer umatlas      5111 Feb 11 12:48 queuedata.json
[2026-02-11 21:34:11] -rw-r--r-- 1 boincer umatlas       100 Feb 11 18:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-11 21:34:11] -rwxr-xr-x 1 boincer umatlas      7986 Feb 11 18:59 run_atlas
[2026-02-11 21:34:11] -rw-r--r-- 1 boincer umatlas       105 Feb 11 18:59 job.xml
[2026-02-11 21:34:11] -rw-r--r-- 3 boincer umatlas 683613159 Feb 11 18:59 EVNT.48431094._000071.pool.root.1
[2026-02-11 21:34:11] -rw-r--r-- 3 boincer umatlas 683613159 Feb 11 18:59 ATLAS.root_0
[2026-02-11 21:34:11] -rw-r--r-- 2 boincer umatlas     15845 Feb 11 18:59 start_atlas.sh
[2026-02-11 21:34:11] drwxrwx--x 2 boincer umatlas      4096 Feb 11 18:59 shared
[2026-02-11 21:34:11] -rw-r--r-- 2 boincer umatlas    597954 Feb 11 18:59 input.tar.gz
[2026-02-11 21:34:11] -rw-r--r-- 1 boincer umatlas         0 Feb 11 18:59 boinc_lockfile
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas   1512955 Feb 11 19:00 agis_ddmendpoints.agis.ALL.json
[2026-02-11 21:34:11] -rw-r--r-- 1 boincer umatlas      2556 Feb 11 19:47 pandaJob.out
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas        57 Feb 11 19:47 setup.sh.local
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas   1005057 Feb 11 19:47 agis_schedconf.cvmfs.json
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas       444 Feb 11 19:47 workernode_map.json
[2026-02-11 21:34:11] -rw-r--r-- 1 boincer umatlas      5952 Feb 11 21:30 init_data.xml
[2026-02-11 21:34:11] -rw-r--r-- 1 boincer umatlas       530 Feb 11 21:32 boinc_task_state.xml
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas 281256422 Feb 11 21:32 HITS.48431096._033604.pool.root.1
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas      1047 Feb 11 21:33 memory_monitor_summary.json
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas        96 Feb 11 21:33 pilot_heartbeat.json
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas    429635 Feb 11 21:33 log.48431096._033604.job.log.tgz.1
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas      6421 Feb 11 21:33 heartbeat.json
[2026-02-11 21:34:11] -rw-r--r-- 1 boincer umatlas      8192 Feb 11 21:34 boinc_mmap_file
[2026-02-11 21:34:11] -rw-r--r-- 1 boincer umatlas        27 Feb 11 21:34 wrapper_checkpoint.txt
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas      4806 Feb 11 21:34 pilotlog.txt
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas    902525 Feb 11 21:34 log.48431096._033604.job.log.1
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas       357 Feb 11 21:34 output.list
[2026-02-11 21:34:11] -rw-r--r-- 1 boincer umatlas       620 Feb 11 21:34 runtime_log
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas   1351680 Feb 11 21:34 result.tar.gz
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas       784 Feb 11 21:34 SUfLDmiTTA9n9Rq4apOajLDm4fhM0noT9bVooX4SDmZsjKDmH9ILCo.diag
[2026-02-11 21:34:11] -rw-r--r-- 1 boincer umatlas      9423 Feb 11 21:34 runtime_log.err
[2026-02-11 21:34:11] -rw-r--r-- 1 boincer umatlas     23241 Feb 11 21:34 stderr.txt
[2026-02-11 21:34:11] HITS file was successfully produced:
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas 281256422 Feb 11 21:32 shared/HITS.pool.root.1
[2026-02-11 21:34:11]  *** Contents of shared directory: ***
[2026-02-11 21:34:11] total 944188
[2026-02-11 21:34:11] -rw-r--r-- 3 boincer umatlas 683613159 Feb 11 18:59 ATLAS.root_0
[2026-02-11 21:34:11] -rw-r--r-- 2 boincer umatlas     15845 Feb 11 18:59 start_atlas.sh
[2026-02-11 21:34:11] -rw-r--r-- 2 boincer umatlas    597954 Feb 11 18:59 input.tar.gz
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas 281256422 Feb 11 21:32 HITS.pool.root.1
[2026-02-11 21:34:11] -rw------- 1 boincer umatlas   1351680 Feb 11 21:34 result.tar.gz
21:34:12 (20939): run_atlas exited; CPU time 68806.973417
21:34:12 (20939): called boinc_finish(0)

</stderr_txt>
]]>

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