Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:01:14 (1161140): wrapper (7.7.26015): starting
12:01:14 (1161140): wrapper: running run_atlas (--nthreads 4)
[2026-02-12 12:01:14] Arguments: --nthreads 4
[2026-02-12 12:01:14] Threads: 4
[2026-02-12 12:01:14] Checking for CVMFS
[2026-02-12 12:01:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 12:01:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 12:01:14] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 12:01:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 12:01:14] 2.9.2.0 3652207 9021 99160 156152 2 50 25044092 36864000 0 130560 0 4779449 99.988 306729 6560 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-12 12:01:14] CVMFS is ok
[2026-02-12 12:01:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 12:01:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 12:01:14] Further information can be found at the LHC@home message board.
[2026-02-12 12:01:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 12:01:14] Checking for apptainer binary...
[2026-02-12 12:01:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 12:01:14] Running /usr/bin/apptainer --version
[2026-02-12 12:01:14] apptainer version 1.4.1-1.1
[2026-02-12 12:01:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 12:01:14] magicA244a
[2026-02-12 12:01:14] apptainer works
[2026-02-12 12:01:14] Set ATHENA_PROC_NUMBER=4
[2026-02-12 12:01:14] Set ATHENA_CORE_NUMBER=4
[2026-02-12 12:01:14] Starting ATLAS job with PandaID=7012473655
[2026-02-12 12:01:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 13:33:43]  *** The last 200 lines of the pilot log: ***
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | job 7012473655 has completed (purged errors)
[2026-02-12 13:33:43] 2026-02-12 12:33:10,812 | INFO     | overall cleanup function is called
[2026-02-12 13:33:43] 2026-02-12 12:33:11,222 | INFO     | PID=1165239 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-12 13:33:43] 2026-02-12 12:33:11,819 | INFO     | --- collectZombieJob: --- 10, [1169749]
[2026-02-12 13:33:43] 2026-02-12 12:33:11,819 | INFO     | zombie collector waiting for pid 1169749
[2026-02-12 13:33:43] 2026-02-12 12:33:11,819 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 13:33:43] 2026-02-12 12:33:11,819 | INFO     | collected zombie processes
[2026-02-12 13:33:43] 2026-02-12 12:33:11,819 | INFO     | will attempt to kill all subprocesses of pid=1169749
[2026-02-12 13:33:43] 2026-02-12 12:33:11,862 | INFO     | process IDs to be killed: [1169749] (in reverse order)
[2026-02-12 13:33:43] 2026-02-12 12:33:11,889 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 13:33:43] 2026-02-12 12:33:11,890 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 13:33:43] 2026-02-12 12:33:11,891 | INFO     | did not find any defunct processes belonging to 1169749
[2026-02-12 13:33:43] 2026-02-12 12:33:11,892 | INFO     | did not find any defunct processes belonging to 1169749
[2026-02-12 13:33:43] 2026-02-12 12:33:11,892 | INFO     | ready for new job
[2026-02-12 13:33:43] 2026-02-12 12:33:11,892 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 13:33:43] 2026-02-12 12:33:11,893 | INFO     | **************************************
[2026-02-12 13:33:43] 2026-02-12 12:33:11,893 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 13:33:43] 2026-02-12 12:33:11,893 | INFO     | **************************************
[2026-02-12 13:33:43] 2026-02-12 12:33:11,893 | INFO     | 
[2026-02-12 13:33:43] 2026-02-12 12:33:11,893 | INFO     | architecture information:
[2026-02-12 13:33:43] 2026-02-12 12:33:11,893 | INFO     | executing command: cat /etc/os-release
[2026-02-12 13:33:43] 2026-02-12 12:33:11,903 | INFO     | cat /etc/os-release:
[2026-02-12 13:33:43] NAME="CentOS Linux"
[2026-02-12 13:33:43] VERSION="7 (Core)"
[2026-02-12 13:33:43] ID="centos"
[2026-02-12 13:33:43] ID_LIKE="rhel fedora"
[2026-02-12 13:33:43] VERSION_ID="7"
[2026-02-12 13:33:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 13:33:43] ANSI_COLOR="0;31"
[2026-02-12 13:33:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 13:33:43] HOME_URL="https://www.centos.org/"
[2026-02-12 13:33:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 13:33:43] 
[2026-02-12 13:33:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 13:33:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 13:33:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 13:33:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 13:33:43] 
[2026-02-12 13:33:43] 2026-02-12 12:33:11,903 | INFO     | **************************************
[2026-02-12 13:33:43] 2026-02-12 12:33:12,406 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-12 13:33:43] 2026-02-12 12:33:12,420 | INFO     | sufficient remaining disk space (330419929088 B)
[2026-02-12 13:33:43] 2026-02-12 12:33:12,420 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 13:33:43] 2026-02-12 12:33:12,420 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 13:33:43] 2026-02-12 12:33:12,420 | INFO     | update_server=False
[2026-02-12 13:33:43] 2026-02-12 12:33:12,420 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 13:33:43] 2026-02-12 12:33:12,421 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 13:33:43] 2026-02-12 12:33:12,421 | INFO     | aborting loop
[2026-02-12 13:33:43] 2026-02-12 12:33:12,421 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 13:33:43] 2026-02-12 12:33:12,719 | INFO     | all data control threads have been joined
[2026-02-12 13:33:43] 2026-02-12 12:33:12,966 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 13:33:43] 2026-02-12 12:33:13,030 | INFO     | all job control threads have been joined
[2026-02-12 13:33:43] 2026-02-12 12:33:13,132 | INFO     | all payload control threads have been joined
[2026-02-12 13:33:43] 2026-02-12 12:33:13,426 | INFO     | [job] queue monitor thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:13,426 | INFO     | [job] retrieve thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:13,427 | INFO     | [job] job monitor thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:13,508 | INFO     | [data] copytool_in thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:13,725 | INFO     | [data] control thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:13,877 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:13,992 | INFO     | [payload] failed_post thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:14,036 | INFO     | [job] control thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:14,138 | INFO     | [payload] control thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:14,517 | INFO     | [payload] validate_post thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:14,823 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:14,826 | INFO     | [job] validate thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:14,910 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:14,973 | INFO     | [data] copytool_out thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:15,819 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 13:33:43] 2026-02-12 12:33:19,826 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:22,824 | INFO     | job.realtimelogging is not enabled
[2026-02-12 13:33:43] 2026-02-12 12:33:23,830 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 13:33:43] 2026-02-12 12:33:31,215 | INFO     | [monitor] cgroup control has ended
[2026-02-12 13:33:43] 2026-02-12 12:33:31,801 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140241027036992)>', '<ExcThread(monitor, started 140240396211968)>']
[2026-02-12 13:33:43] 2026-02-12 12:33:36,827 | INFO     | all workflow threads have been joined
[2026-02-12 13:33:43] 2026-02-12 12:33:36,828 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 13:33:43] 2026-02-12 12:33:36,829 | INFO     | traces error code: 0
[2026-02-12 13:33:43] 2026-02-12 12:33:36,829 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 13:33:43] 2026-02-12 12:33:43,363 | INFO     | PID=1165239 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-12 13:33:43] 2026-02-12 12:33:43,364 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 13:33:43] 2026-02-12 12:33:43,364 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 13:33:43] 2026-02-12 12:33:43,364 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 13:33:43] 2026-02-12 12:33:43,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 13:33:43] 2026-02-12 12:33:43,364 | INFO     | [monitor] control thread has ended
[2026-02-12 13:33:43] 2026-02-12 12:33:43,415 [wrapper] ==== pilot stdout END ====
[2026-02-12 13:33:43] 2026-02-12 12:33:43,417 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 13:33:43] 2026-02-12 12:33:43,420 [wrapper] pilotpid: 1165239
[2026-02-12 13:33:43] 2026-02-12 12:33:43,422 [wrapper] Pilot exit status: 0
[2026-02-12 13:33:43] 2026-02-12 12:33:43,430 [wrapper] pandaids: 7012473655
[2026-02-12 13:33:43] 2026-02-12 12:33:43,447 [wrapper] cleanup supervisor_pilot 1175519 1165240
[2026-02-12 13:33:43] 2026-02-12 12:33:43,449 [wrapper] Test setup, not cleaning
[2026-02-12 13:33:43] 2026-02-12 12:33:43,452 [wrapper] apfmon messages muted
[2026-02-12 13:33:43] 2026-02-12 12:33:43,454 [wrapper] ==== wrapper stdout END ====
[2026-02-12 13:33:43] 2026-02-12 12:33:43,457 [wrapper] ==== wrapper stderr END ====
[2026-02-12 13:33:43]  *** Error codes and diagnostics ***
[2026-02-12 13:33:43]     "exeErrorCode": 0,
[2026-02-12 13:33:43]     "exeErrorDiag": "",
[2026-02-12 13:33:43]     "pilotErrorCode": 0,
[2026-02-12 13:33:43]     "pilotErrorDiag": "",
[2026-02-12 13:33:43]  *** Listing of results directory ***
[2026-02-12 13:33:43] total 949156
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc    584627 Feb 11 16:25 pilot3.tar.gz
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc      5111 Feb 11 16:28 queuedata.json
[2026-02-12 13:33:43] -rwx------ 1 boinc boinc     36322 Feb 11 16:28 runpilot2-wrapper.sh
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc       100 Feb 12 12:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 13:33:43] -rwxr-xr-x 1 boinc boinc      7986 Feb 12 12:01 run_atlas
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc       105 Feb 12 12:01 job.xml
[2026-02-12 13:33:43] -rw-r--r-- 2 boinc boinc 680258336 Feb 12 12:01 EVNT.48431094._000744.pool.root.1
[2026-02-12 13:33:43] drwxrwx--x 2 boinc boinc      4096 Feb 12 12:01 shared
[2026-02-12 13:33:43] -rw-r--r-- 2 boinc boinc    597950 Feb 12 12:01 input.tar.gz
[2026-02-12 13:33:43] -rw-r--r-- 2 boinc boinc     15845 Feb 12 12:01 start_atlas.sh
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc         0 Feb 12 12:01 boinc_setup_complete
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc      6438 Feb 12 12:01 init_data.xml
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc         0 Feb 12 12:01 boinc_lockfile
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc      2557 Feb 12 12:01 pandaJob.out
[2026-02-12 13:33:43] -rw------- 1 boinc boinc   1000188 Feb 12 12:01 agis_schedconf.cvmfs.json
[2026-02-12 13:33:43] -rw------- 1 boinc boinc   1512955 Feb 12 12:01 agis_ddmendpoints.agis.ALL.json
[2026-02-12 13:33:43] -rw------- 1 boinc boinc       427 Feb 12 12:01 workernode_map.json
[2026-02-12 13:33:43] drwx------ 5 boinc boinc      4096 Feb 12 12:01 pilot3
[2026-02-12 13:33:43] -rw------- 1 boinc boinc 285558331 Feb 12 13:32 HITS.48431096._031938.pool.root.1
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc       530 Feb 12 13:32 boinc_task_state.xml
[2026-02-12 13:33:43] -rw------- 1 boinc boinc        95 Feb 12 13:32 pilot_heartbeat.json
[2026-02-12 13:33:43] -rw------- 1 boinc boinc      1019 Feb 12 13:33 memory_monitor_summary.json
[2026-02-12 13:33:43] -rw------- 1 boinc boinc    298570 Feb 12 13:33 log.48431096._031938.job.log.tgz.1
[2026-02-12 13:33:43] -rw------- 1 boinc boinc      6306 Feb 12 13:33 heartbeat.json
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc      8192 Feb 12 13:33 boinc_mmap_file
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc        27 Feb 12 13:33 wrapper_checkpoint.txt
[2026-02-12 13:33:43] -rw------- 1 boinc boinc       747 Feb 12 13:33 pilotlog.txt
[2026-02-12 13:33:43] -rw------- 1 boinc boinc    801670 Feb 12 13:33 log.48431096._031938.job.log.1
[2026-02-12 13:33:43] -rw------- 1 boinc boinc       357 Feb 12 13:33 output.list
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc       620 Feb 12 13:33 runtime_log
[2026-02-12 13:33:43] -rw------- 1 boinc boinc   1116160 Feb 12 13:33 result.tar.gz
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc      8916 Feb 12 13:33 runtime_log.err
[2026-02-12 13:33:43] -rw------- 1 boinc boinc       661 Feb 12 13:33 7QPKDmqJRA9n9Rq4apOajLDm4fhM0noT9bVooX4SDmHjjKDmrFbyBn.diag
[2026-02-12 13:33:43] -rw-r--r-- 1 boinc boinc     12564 Feb 12 13:33 stderr.txt
[2026-02-12 13:33:43] HITS file was successfully produced:
[2026-02-12 13:33:43] -rw------- 1 boinc boinc 285558331 Feb 12 13:32 shared/HITS.pool.root.1
[2026-02-12 13:33:43]  *** Contents of shared directory: ***
[2026-02-12 13:33:43] total 944884
[2026-02-12 13:33:43] -rw-r--r-- 2 boinc boinc 680258336 Feb 12 12:01 ATLAS.root_0
[2026-02-12 13:33:43] -rw-r--r-- 2 boinc boinc    597950 Feb 12 12:01 input.tar.gz
[2026-02-12 13:33:43] -rw-r--r-- 2 boinc boinc     15845 Feb 12 12:01 start_atlas.sh
[2026-02-12 13:33:43] -rw------- 1 boinc boinc 285558331 Feb 12 13:32 HITS.pool.root.1
[2026-02-12 13:33:43] -rw------- 1 boinc boinc   1116160 Feb 12 13:33 result.tar.gz
13:33:45 (1161140): run_atlas exited; CPU time 20927.929743
13:33:45 (1161140): called boinc_finish(0)

</stderr_txt>
]]>

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