Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:27:08 (7834): wrapper (7.7.26015): starting
04:27:08 (7834): wrapper: running run_atlas (--nthreads 8)
[2026-02-12 04:27:09] Arguments: --nthreads 8
[2026-02-12 04:27:09] Threads: 8
[2026-02-12 04:27:09] Checking for CVMFS
[2026-02-12 04:27:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 04:27:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 04:27:09] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 04:27:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 04:27:09] 2.11.0.0 4202 177865 77412 156138 3 11 2104218 4096000 1834 130560 3 6793486 99.306 11724759 490 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-12 04:27:09] CVMFS is ok
[2026-02-12 04:27:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 04:27:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 04:27:09] Further information can be found at the LHC@home message board.
[2026-02-12 04:27:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 04:27:09] Checking for apptainer binary...
[2026-02-12 04:27:09] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-12 04:27:09] apptainer is not installed, using version from CVMFS
[2026-02-12 04:27:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 04:27:09] WARNING: Environment variable TMPDIR already has value [/tmp/job_11090091/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node336
[2026-02-12 04:27:09] apptainer works
[2026-02-12 04:27:09] Set ATHENA_PROC_NUMBER=8
[2026-02-12 04:27:09] Set ATHENA_CORE_NUMBER=8
[2026-02-12 04:27:09] Starting ATLAS job with PandaID=7008683998
[2026-02-12 04:27:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11090091/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 05:35:27]  *** The last 200 lines of the pilot log: ***
[2026-02-12 05:35:27]  lfn=log.48508763._002969.job.log.tgz.1
[2026-02-12 05:35:27]  mtime=0
[2026-02-12 05:35:27]  protocol_id=None
[2026-02-12 05:35:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-12 05:35:27]  replicas=None
[2026-02-12 05:35:27]  scope=mc23_13p6TeV
[2026-02-12 05:35:27]  status=None
[2026-02-12 05:35:27]  status_code=0
[2026-02-12 05:35:27]  storage_token=
[2026-02-12 05:35:27]  surl=/tmp/job_11090091/atlas/pilot/slots/0/PanDA_Pilot-7008683998/log.48508763._002969.job.log.tgz.1
[2026-02-12 05:35:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/40/2a/log.48508763._002969.job.log.tgz.1
[2026-02-12 05:35:27]  workdir=None
[2026-02-12 05:35:27] ]
[2026-02-12 05:35:27] 2026-02-12 04:34:48,147 | INFO     | transferring file log.48508763._002969.job.log.tgz.1 from /tmp/job_11090091/atlas/pilot/slots/0/PanDA_Pilot-7008683998/log.48508763._002969.job.log.tgz.1 to /tmp/j
[2026-02-12 05:35:27] 2026-02-12 04:34:48,147 | INFO     | executing command: /usr/bin/env mv /tmp/job_11090091/atlas/pilot/slots/0/PanDA_Pilot-7008683998/log.48508763._002969.job.log.tgz.1 /tmp/job_11090091/atlas/pilot/sl
[2026-02-12 05:35:27] 2026-02-12 04:34:48,155 | INFO     | adding to output.list: log.48508763._002969.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/40/2a/log.48508763._002969.job.log.tg
[2026-02-12 05:35:27] 2026-02-12 04:34:48,155 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-12 05:35:27] 2026-02-12 04:34:48,155 | INFO     | summary of transferred files:
[2026-02-12 05:35:27] 2026-02-12 04:34:48,155 | INFO     |  -- lfn=log.48508763._002969.job.log.tgz.1, status_code=0, status=transferred
[2026-02-12 05:35:27] 2026-02-12 04:34:48,155 | INFO     | stage-out finished correctly
[2026-02-12 05:35:27] 2026-02-12 04:34:49,731 | INFO     | time since job start (4053s) is within the limit (349056.0s)
[2026-02-12 05:35:27] 2026-02-12 04:34:50,265 | INFO     | monitor loop #305: job 0:7008683998 is in state 'finished'
[2026-02-12 05:35:27] 2026-02-12 04:34:50,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-12 05:35:27] 2026-02-12 04:34:51,591 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-12 05:35:27] 2026-02-12 04:34:51,736 | INFO     | time since job start (4055s) is within the limit (349056.0s)
[2026-02-12 05:35:27] 2026-02-12 04:34:52,714 | INFO     | job 7008683998 has state=finished
[2026-02-12 05:35:27] 2026-02-12 04:34:52,714 | INFO     | preparing for final server update for job 7008683998 in state='finished'
[2026-02-12 05:35:27] 2026-02-12 04:34:52,768 | INFO     | monitor loop #306: job 0:7008683998 is in state 'finished'
[2026-02-12 05:35:27] 2026-02-12 04:34:52,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-12 05:35:27] 2026-02-12 04:34:53,272 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-02-12 05:35:27] 2026-02-12 04:34:53,272 | INFO     | reading metadata from: /tmp/job_11090091/atlas/pilot/slots/0/PanDA_Pilot-7008683998/jobReport.json
[2026-02-12 05:35:27] 2026-02-12 04:34:53,273 | INFO     | added worker_node to metadata from /tmp/job_11090091/atlas/pilot/slots/0/workernode_map.json
[2026-02-12 05:35:27] 2026-02-12 04:34:53,273 | INFO     | this job has now completed (state=finished)
[2026-02-12 05:35:27] 2026-02-12 04:34:53,273 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-12 05:35:27] 2026-02-12 04:34:53,273 | INFO     | log transfer has been attempted: DONE
[2026-02-12 05:35:27] 2026-02-12 04:34:53,273 | INFO     | job 7008683998 has finished - writing final server update
[2026-02-12 05:35:27] 2026-02-12 04:34:53,274 | INFO     | total number of processed events: 400 (read)
[2026-02-12 05:35:27] 2026-02-12 04:34:53,290 | INFO     | using path: /tmp/job_11090091/atlas/pilot/slots/0/PanDA_Pilot-7008683998/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 05:35:27] 2026-02-12 04:34:53,290 | INFO     | extracted standard info from prmon json
[2026-02-12 05:35:27] 2026-02-12 04:34:53,290 | INFO     | extracted standard memory fields from prmon json
[2026-02-12 05:35:27] 2026-02-12 04:34:53,290 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-12 05:35:27] 2026-02-12 04:34:53,290 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-12 05:35:27] 2026-02-12 04:34:53,291 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-12 05:35:27] 2026-02-12 04:34:53,291 | INFO     | fitting pss+swap vs Time
[2026-02-12 05:35:27] 2026-02-12 04:34:53,291 | INFO     | sum of square deviations: 66959395.0
[2026-02-12 05:35:27] 2026-02-12 04:34:53,291 | INFO     | sum of deviations: -2748893020.0
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | mean x: 1770868956.5
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | mean y: 2677053.1666666665
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | intersect: 72702397739.97296
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | chi2: 0.015456637407996915
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | current memory leak: -41.05 B/s (using 60 data points, chi2=0.02)
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | could have reported an average CPU frequency of 2581 MHz (6 samples)
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | ..............................
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | . Timing measurements:
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | . get job = 0 s
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | . initial setup = 2 s
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | . payload setup = 2 s
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | . stage-in = 0 s
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | . payload execution = 4033 s
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | . stage-out = 0 s
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | . log creation = 0 s
[2026-02-12 05:35:27] 2026-02-12 04:34:53,292 | INFO     | ..............................
[2026-02-12 05:35:27] 2026-02-12 04:34:53,339 | INFO     | 
[2026-02-12 05:35:27] 2026-02-12 04:34:53,339 | INFO     | job summary report
[2026-02-12 05:35:27] 2026-02-12 04:34:53,339 | INFO     | --------------------------------------------------
[2026-02-12 05:35:27] 2026-02-12 04:34:53,339 | INFO     | PanDA job id: 7008683998
[2026-02-12 05:35:27] 2026-02-12 04:34:53,339 | INFO     | task id: 48508763
[2026-02-12 05:35:27] 2026-02-12 04:34:53,339 | INFO     | errors: (none)
[2026-02-12 05:35:27] 2026-02-12 04:34:53,339 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-12 05:35:27] 2026-02-12 04:34:53,339 | INFO     | pilot state: finished 
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | transexitcode: 0
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | exeerrorcode: 0
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | exeerrordiag: 
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | exitcode: 0
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | exitmsg: OK
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | cpuconsumptiontime: 29417 s
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | nevents: 400
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | neventsw: 0
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | pid: 16303
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | pgrp: 16303
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | corecount: 8
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | event service: False
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | sizes: {0: 2282380, 10: 2282380, 4040: 2308392, 4041: 2317503, 4045: 2317503, 4046: 2317697}
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | --------------------------------------------------
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | 
[2026-02-12 05:35:27] 2026-02-12 04:34:53,340 | INFO     | executing command: ls -lF /tmp/job_11090091/atlas/pilot/slots/0
[2026-02-12 05:35:27] 2026-02-12 04:34:53,349 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,349 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,349 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,349 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,349 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,349 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,349 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,349 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,349 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,349 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,350 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,350 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,350 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,350 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,350 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,350 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,350 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,350 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 05:35:27] 2026-02-12 04:34:53,350 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,350 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 05:35:27] 2026-02-12 04:34:53,350 | INFO     | job 7008683998 has completed (purged errors)
[2026-02-12 05:35:27] 2026-02-12 04:34:53,350 | INFO     | overall cleanup function is called
[2026-02-12 05:35:27] 2026-02-12 04:34:54,356 | INFO     | --- collectZombieJob: --- 10, [16303]
[2026-02-12 05:35:27] 2026-02-12 04:34:54,356 | INFO     | zombie collector waiting for pid 16303
[2026-02-12 05:35:27] 2026-02-12 04:34:54,356 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 05:35:27] 2026-02-12 04:34:54,356 | INFO     | collected zombie processes
[2026-02-12 05:35:27] 2026-02-12 04:34:54,356 | INFO     | will attempt to kill all subprocesses of pid=16303
[2026-02-12 05:35:27] 2026-02-12 04:34:54,453 | INFO     | process IDs to be killed: [16303] (in reverse order)
[2026-02-12 05:35:27] 2026-02-12 04:34:54,487 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 05:35:27] 2026-02-12 04:34:54,488 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 05:35:27] 2026-02-12 04:34:54,491 | INFO     | did not find any defunct processes belonging to 16303
[2026-02-12 05:35:27] 2026-02-12 04:34:54,494 | INFO     | did not find any defunct processes belonging to 16303
[2026-02-12 05:35:27] 2026-02-12 04:34:54,494 | INFO     | ready for new job
[2026-02-12 05:35:27] 2026-02-12 04:34:54,494 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 05:35:27] 2026-02-12 04:34:54,495 | INFO     | **************************************
[2026-02-12 05:35:27] 2026-02-12 04:34:54,495 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 05:35:27] 2026-02-12 04:34:54,495 | INFO     | **************************************
[2026-02-12 05:35:27] 2026-02-12 04:34:54,495 | INFO     | 
[2026-02-12 05:35:27] 2026-02-12 04:34:54,510 | INFO     | architecture information:
[2026-02-12 05:35:27] 2026-02-12 04:34:54,510 | INFO     | executing command: cat /etc/os-release
[2026-02-12 05:35:27] 2026-02-12 04:34:54,516 | INFO     | cat /etc/os-release:
[2026-02-12 05:35:27] NAME="CentOS Linux"
[2026-02-12 05:35:27] VERSION="7 (Core)"
[2026-02-12 05:35:27] ID="centos"
[2026-02-12 05:35:27] ID_LIKE="rhel fedora"
[2026-02-12 05:35:27] VERSION_ID="7"
[2026-02-12 05:35:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 05:35:27] ANSI_COLOR="0;31"
[2026-02-12 05:35:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 05:35:27] HOME_URL="https://www.centos.org/"
[2026-02-12 05:35:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 05:35:27] 
[2026-02-12 05:35:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 05:35:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 05:35:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 05:35:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 05:35:27] 
[2026-02-12 05:35:27] 2026-02-12 04:34:54,517 | INFO     | **************************************
[2026-02-12 05:35:27] 2026-02-12 04:34:55,019 | INFO     | executing command: df -mP /tmp/job_11090091/atlas/pilot/slots/0
[2026-02-12 05:35:27] 2026-02-12 04:34:55,025 | INFO     | sufficient remaining disk space (220119171072 B)
[2026-02-12 05:35:27] 2026-02-12 04:34:55,025 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 05:35:27] 2026-02-12 04:34:55,025 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 05:35:27] 2026-02-12 04:34:55,025 | INFO     | update_server=False
[2026-02-12 05:35:27] 2026-02-12 04:34:55,025 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 05:35:27] 2026-02-12 04:34:55,025 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 05:35:27] 2026-02-12 04:34:55,264 | INFO     | all data control threads have been joined
[2026-02-12 05:35:27] 2026-02-12 04:34:55,270 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-12 05:35:27] 2026-02-12 04:34:55,271 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-12 05:35:27] 2026-02-12 04:34:55,271 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 05:35:27] 2026-02-12 04:34:55,271 | INFO     | will abort loop
[2026-02-12 05:35:27] 2026-02-12 04:34:56,030 | INFO     | [job] retrieve thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:34:56,030 | INFO     | [job] queue monitor thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:34:56,215 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 05:35:27] 2026-02-12 04:34:56,269 | INFO     | [data] control thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:34:56,276 | INFO     | [job] job monitor thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:34:56,327 | INFO     | all payload control threads have been joined
[2026-02-12 05:35:27] 2026-02-12 04:34:56,471 | INFO     | all job control threads have been joined
[2026-02-12 05:35:27] 2026-02-12 04:34:56,536 | INFO     | [job] validate thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:34:56,586 | INFO     | [payload] failed_post thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:34:56,705 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:34:56,723 | INFO     | [payload] validate_post thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:34:56,762 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:34:57,004 | INFO     | [data] copytool_in thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:34:57,138 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:34:57,332 | INFO     | [payload] control thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:34:57,476 | INFO     | [job] control thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:34:57,642 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 05:35:27] 2026-02-12 04:34:58,220 | INFO     | [data] copytool_out thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:35:01,647 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:35:05,476 | INFO     | job.realtimelogging is not enabled
[2026-02-12 05:35:27] 2026-02-12 04:35:06,481 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 05:35:27] 2026-02-12 04:35:22,598 | INFO     | [monitor] cgroup control has ended
[2026-02-12 05:35:27] 2026-02-12 04:35:22,755 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-02-12 05:35:27] 2026-02-12 04:35:24,920 | INFO     | PID=11805 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-12 05:35:27] 2026-02-12 04:35:24,920 | INFO     | .. there are 3 such processes running
[2026-02-12 05:35:27] 2026-02-12 04:35:24,920 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 05:35:27] 2026-02-12 04:35:24,921 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 05:35:27] 2026-02-12 04:35:24,921 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 05:35:27] 2026-02-12 04:35:24,921 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 05:35:27] 2026-02-12 04:35:24,921 | INFO     | [monitor] control thread has ended
[2026-02-12 05:35:27] 2026-02-12 04:35:27,780 | INFO     | all workflow threads have been joined
[2026-02-12 05:35:27] 2026-02-12 04:35:27,780 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 05:35:27] 2026-02-12 04:35:27,780 | INFO     | traces error code: 0
[2026-02-12 05:35:27] 2026-02-12 04:35:27,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 05:35:27] 2026-02-12 04:35:27,832 [wrapper] ==== pilot stdout END ====
[2026-02-12 05:35:27] 2026-02-12 04:35:27,833 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 05:35:27] 2026-02-12 04:35:27,834 [wrapper] pilotpid: 11805
[2026-02-12 05:35:27] 2026-02-12 04:35:27,836 [wrapper] Pilot exit status: 0
[2026-02-12 05:35:27] 2026-02-12 04:35:27,840 [wrapper] pandaids: 7008683998
[2026-02-12 05:35:27] 2026-02-12 04:35:27,860 [wrapper] cleanup supervisor_pilot 28388 11806
[2026-02-12 05:35:27] 2026-02-12 04:35:27,861 [wrapper] Test setup, not cleaning
[2026-02-12 05:35:27] 2026-02-12 04:35:27,862 [wrapper] apfmon messages muted
[2026-02-12 05:35:27] 2026-02-12 04:35:27,863 [wrapper] ==== wrapper stdout END ====
[2026-02-12 05:35:27] 2026-02-12 04:35:27,864 [wrapper] ==== wrapper stderr END ====
[2026-02-12 05:35:27]  *** Error codes and diagnostics ***
[2026-02-12 05:35:27]     "exeErrorCode": 0,
[2026-02-12 05:35:27]     "exeErrorDiag": "",
[2026-02-12 05:35:27]     "pilotErrorCode": 0,
[2026-02-12 05:35:27]     "pilotErrorDiag": "",
[2026-02-12 05:35:27]  *** Listing of results directory ***
[2026-02-12 05:35:28] total 946224
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user    584627 Feb 11 16:25 pilot3.tar.gz
[2026-02-12 05:35:28] -rwx------ 1 mf493845 unix-user     36322 Feb 11 16:27 runpilot2-wrapper.sh
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user      5111 Feb 11 16:28 queuedata.json
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user       100 Feb 12 02:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 05:35:28] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb 12 02:21 run_atlas
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user       105 Feb 12 02:21 job.xml
[2026-02-12 05:35:28] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 12 04:27 start_atlas.sh
[2026-02-12 05:35:28] drwxrwx--x 2 mf493845 unix-user       100 Feb 12 04:27 shared
[2026-02-12 05:35:28] -rw-r--r-- 2 mf493845 unix-user    597952 Feb 12 04:27 input.tar.gz
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user      6390 Feb 12 04:27 init_data.xml
[2026-02-12 05:35:28] -rw-r--r-- 2 mf493845 unix-user 680499891 Feb 12 04:27 EVNT.48508760._000058.pool.root.1
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user         0 Feb 12 04:27 boinc_setup_complete
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user      8192 Feb 12 04:27 boinc_mmap_file
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user         0 Feb 12 04:27 boinc_lockfile
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user      2548 Feb 12 04:27 pandaJob.out
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user   1005065 Feb 12 04:27 agis_schedconf.cvmfs.json
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user   1512955 Feb 12 04:27 agis_ddmendpoints.agis.ALL.json
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user       416 Feb 12 04:27 workernode_map.json
[2026-02-12 05:35:28] drwx------ 5 mf493845 unix-user       440 Feb 12 04:27 pilot3
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user 282618156 Feb 12 05:34 HITS.48508763._002969.pool.root.1
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user      1022 Feb 12 05:34 memory_monitor_summary.json
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user    330053 Feb 12 05:34 log.48508763._002969.job.log.tgz.1
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user      6316 Feb 12 05:34 heartbeat.json
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user        95 Feb 12 05:35 pilot_heartbeat.json
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user      5089 Feb 12 05:35 pilotlog.txt
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user    620377 Feb 12 05:35 log.48508763._002969.job.log.1
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user       357 Feb 12 05:35 output.list
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user       620 Feb 12 05:35 runtime_log
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user    972800 Feb 12 05:35 result.tar.gz
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user      9219 Feb 12 05:35 runtime_log.err
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user       644 Feb 12 05:35 gu3NDmQIRA9n9Rq4apOajLDm4fhM0noT9bVooX4SDm5fjKDmFgWtPm.diag
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user     22123 Feb 12 05:35 stderr.txt
[2026-02-12 05:35:28] HITS file was successfully produced:
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user 282618156 Feb 12 05:34 shared/HITS.pool.root.1
[2026-02-12 05:35:28]  *** Contents of shared directory: ***
[2026-02-12 05:35:28] total 942100
[2026-02-12 05:35:28] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 12 04:27 start_atlas.sh
[2026-02-12 05:35:28] -rw-r--r-- 2 mf493845 unix-user    597952 Feb 12 04:27 input.tar.gz
[2026-02-12 05:35:28] -rw-r--r-- 2 mf493845 unix-user 680499891 Feb 12 04:27 ATLAS.root_0
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user 282618156 Feb 12 05:34 HITS.pool.root.1
[2026-02-12 05:35:28] -rw------- 1 mf493845 unix-user    972800 Feb 12 05:35 result.tar.gz
05:35:29 (7834): run_atlas exited; CPU time 29468.871756
05:35:29 (7834): called boinc_finish(0)

</stderr_txt>
]]>

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