Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:43:37 (30513): wrapper (7.7.26015): starting
08:43:37 (30513): wrapper: running run_atlas (--nthreads 8)
[2026-02-12 08:43:37] Arguments: --nthreads 8
[2026-02-12 08:43:37] Threads: 8
[2026-02-12 08:43:37] Checking for CVMFS
[2026-02-12 08:43:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 08:43:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 08:43:42] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 08:43:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 08:43:43] 2.11.2.0 15872 48213 108412 156144 3 53 19261097 25165824 4784 130560 0 16352641 99.862 10357621 3076 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-12 08:43:43] CVMFS is ok
[2026-02-12 08:43:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 08:43:43] Checking for apptainer binary...
[2026-02-12 08:43:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 08:43:43] Running /usr/bin/apptainer --version
[2026-02-12 08:43:43] apptainer version 1.3.2-1.el7
[2026-02-12 08:43:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 08:43:46] cg-vwn496.simple-grid.lan
[2026-02-12 08:43:46] apptainer works
[2026-02-12 08:43:46] Set ATHENA_PROC_NUMBER=8
[2026-02-12 08:43:46] Set ATHENA_CORE_NUMBER=8
[2026-02-12 08:43:46] Starting ATLAS job with PandaID=7008552648
[2026-02-12 08:43:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 12:48:30]  *** The last 200 lines of the pilot log: ***
[2026-02-12 12:48:30] 2026-02-12 11:47:51,696 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-12 12:48:30] 2026-02-12 11:47:51,696 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-12 12:48:30] 2026-02-12 11:47:51,701 | INFO     | fitting pss+swap vs Time
[2026-02-12 12:48:30] 2026-02-12 11:47:51,701 | INFO     | sum of square deviations: 3822136780.0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,703 | INFO     | sum of deviations: 108410000807.99998
[2026-02-12 12:48:30] 2026-02-12 11:47:51,703 | INFO     | mean x: 1770889802.0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,703 | INFO     | mean y: 2436700.6926406925
[2026-02-12 12:48:30] 2026-02-12 11:47:51,703 | INFO     | intersect: -50226578092.885445
[2026-02-12 12:48:30] 2026-02-12 11:47:51,704 | INFO     | chi2: 5.0984208667792315
[2026-02-12 12:48:30] 2026-02-12 11:47:51,704 | INFO     | sum of square deviations: 3579276412.5
[2026-02-12 12:48:30] 2026-02-12 11:47:51,706 | INFO     | sum of deviations: 105857860055.0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,706 | INFO     | mean x: 1770889649.5
[2026-02-12 12:48:30] 2026-02-12 11:47:51,706 | INFO     | mean y: 2435097.8761061947
[2026-02-12 12:48:30] 2026-02-12 11:47:51,707 | INFO     | intersect: -52372002381.98394
[2026-02-12 12:48:30] 2026-02-12 11:47:51,707 | INFO     | chi2: 5.1044706628927115
[2026-02-12 12:48:30] 2026-02-12 11:47:51,707 | INFO     | current chi2=5.1044706628927115 (change=-0.1186601944319628 %)
[2026-02-12 12:48:30] 2026-02-12 11:47:51,707 | INFO     | right removable region: 225
[2026-02-12 12:48:30] 2026-02-12 11:47:51,708 | INFO     | sum of square deviations: 3579276412.5
[2026-02-12 12:48:30] 2026-02-12 11:47:51,709 | INFO     | sum of deviations: 32019733229.5
[2026-02-12 12:48:30] 2026-02-12 11:47:51,710 | INFO     | mean x: 1770889954.5
[2026-02-12 12:48:30] 2026-02-12 11:47:51,710 | INFO     | mean y: 2484613.792035398
[2026-02-12 12:48:30] 2026-02-12 11:47:51,710 | INFO     | intersect: -15839662621.292843
[2026-02-12 12:48:30] 2026-02-12 11:47:51,710 | INFO     | chi2: 0.7549237437901288
[2026-02-12 12:48:30] 2026-02-12 11:47:51,711 | INFO     | current chi2=0.7549237437901288 (change=85.19298889761863 %)
[2026-02-12 12:48:30] 2026-02-12 11:47:51,711 | INFO     | sum of square deviations: 3346927870.0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,713 | INFO     | sum of deviations: 3026537631.0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,713 | INFO     | mean x: 1770890107.0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,713 | INFO     | mean y: 2503519.923076923
[2026-02-12 12:48:30] 2026-02-12 11:47:51,714 | INFO     | intersect: -1598865185.1638112
[2026-02-12 12:48:30] 2026-02-12 11:47:51,714 | INFO     | chi2: 0.02044610258433324
[2026-02-12 12:48:30] 2026-02-12 11:47:51,714 | INFO     | current chi2=0.02044610258433324 (change=97.29163339310503 %)
[2026-02-12 12:48:30] 2026-02-12 11:47:51,714 | INFO     | sum of square deviations: 3124858590.0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,716 | INFO     | sum of deviations: 616227672.9999998
[2026-02-12 12:48:30] 2026-02-12 11:47:51,716 | INFO     | mean x: 1770890259.5
[2026-02-12 12:48:30] 2026-02-12 11:47:51,716 | INFO     | mean y: 2505148.388888889
[2026-02-12 12:48:30] 2026-02-12 11:47:51,717 | INFO     | intersect: -346717561.15780157
[2026-02-12 12:48:30] 2026-02-12 11:47:51,717 | INFO     | chi2: 0.005762658633069832
[2026-02-12 12:48:30] 2026-02-12 11:47:51,717 | INFO     | current chi2=0.005762658633069832 (change=71.81536867820739 %)
[2026-02-12 12:48:30] 2026-02-12 11:47:51,718 | INFO     | sum of square deviations: 2912836010.0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,719 | INFO     | sum of deviations: 1115218042.999999
[2026-02-12 12:48:30] 2026-02-12 11:47:51,719 | INFO     | mean x: 1770890412.0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,719 | INFO     | mean y: 2504786.355450237
[2026-02-12 12:48:30] 2026-02-12 11:47:51,720 | INFO     | intersect: -675504182.5181878
[2026-02-12 12:48:30] 2026-02-12 11:47:51,720 | INFO     | chi2: 0.0054450528344970614
[2026-02-12 12:48:30] 2026-02-12 11:47:51,720 | INFO     | current chi2=0.0054450528344970614 (change=5.51144565027928 %)
[2026-02-12 12:48:30] 2026-02-12 11:47:51,720 | INFO     | left removable region: 40
[2026-02-12 12:48:30] 2026-02-12 11:47:51,721 | INFO     | sum of square deviations: 1963274020.0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,722 | INFO     | sum of deviations: 2831056542.9999995
[2026-02-12 12:48:30] 2026-02-12 11:47:51,722 | INFO     | mean x: 1770890839.0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,722 | INFO     | mean y: 2503197.5135135134
[2026-02-12 12:48:30] 2026-02-12 11:47:51,722 | INFO     | intersect: -2551135288.8194885
[2026-02-12 12:48:30] 2026-02-12 11:47:51,723 | INFO     | chi2: 0.00012752330990482974
[2026-02-12 12:48:30] 2026-02-12 11:47:51,723 | INFO     | current memory leak: 1.44 B/s (using 185 data points, chi2=0.00)
[2026-02-12 12:48:30] 2026-02-12 11:47:51,723 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2026-02-12 12:48:30] 2026-02-12 11:47:51,723 | INFO     | ..............................
[2026-02-12 12:48:30] 2026-02-12 11:47:51,724 | INFO     | . Timing measurements:
[2026-02-12 12:48:30] 2026-02-12 11:47:51,724 | INFO     | . get job = 0 s
[2026-02-12 12:48:30] 2026-02-12 11:47:51,724 | INFO     | . initial setup = 96 s
[2026-02-12 12:48:30] 2026-02-12 11:47:51,724 | INFO     | . payload setup = 130 s
[2026-02-12 12:48:30] 2026-02-12 11:47:51,724 | INFO     | . stage-in = 0 s
[2026-02-12 12:48:30] 2026-02-12 11:47:51,724 | INFO     | . payload execution = 14193 s
[2026-02-12 12:48:30] 2026-02-12 11:47:51,724 | INFO     | . stage-out = 3 s
[2026-02-12 12:48:30] 2026-02-12 11:47:51,724 | INFO     | . log creation = 0 s
[2026-02-12 12:48:30] 2026-02-12 11:47:51,724 | INFO     | ..............................
[2026-02-12 12:48:30] 2026-02-12 11:47:51,850 | INFO     | 
[2026-02-12 12:48:30] 2026-02-12 11:47:51,850 | INFO     | job summary report
[2026-02-12 12:48:30] 2026-02-12 11:47:51,850 | INFO     | --------------------------------------------------
[2026-02-12 12:48:30] 2026-02-12 11:47:51,850 | INFO     | PanDA job id: 7008552648
[2026-02-12 12:48:30] 2026-02-12 11:47:51,851 | INFO     | task id: 48318034
[2026-02-12 12:48:30] 2026-02-12 11:47:51,851 | INFO     | errors: (none)
[2026-02-12 12:48:30] 2026-02-12 11:47:51,851 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-12 12:48:30] 2026-02-12 11:47:51,851 | INFO     | pilot state: finished 
[2026-02-12 12:48:30] 2026-02-12 11:47:51,851 | INFO     | transexitcode: 0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,851 | INFO     | exeerrorcode: 0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,851 | INFO     | exeerrordiag: 
[2026-02-12 12:48:30] 2026-02-12 11:47:51,851 | INFO     | exitcode: 0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,851 | INFO     | exitmsg: OK
[2026-02-12 12:48:30] 2026-02-12 11:47:51,851 | INFO     | cpuconsumptiontime: 55393 s
[2026-02-12 12:48:30] 2026-02-12 11:47:51,851 | INFO     | nevents: 400
[2026-02-12 12:48:30] 2026-02-12 11:47:51,852 | INFO     | neventsw: 0
[2026-02-12 12:48:30] 2026-02-12 11:47:51,852 | INFO     | pid: 6699
[2026-02-12 12:48:30] 2026-02-12 11:47:51,852 | INFO     | pgrp: 6699
[2026-02-12 12:48:30] 2026-02-12 11:47:51,852 | INFO     | corecount: 8
[2026-02-12 12:48:30] 2026-02-12 11:47:51,852 | INFO     | event service: False
[2026-02-12 12:48:30] 2026-02-12 11:47:51,852 | INFO     | sizes: {0: 2281751, 1: 2282212, 2: 2282212, 14327: 2312658, 14330: 2321658, 14331: 2322036}
[2026-02-12 12:48:30] 2026-02-12 11:47:51,852 | INFO     | --------------------------------------------------
[2026-02-12 12:48:30] 2026-02-12 11:47:51,852 | INFO     | 
[2026-02-12 12:48:30] 2026-02-12 11:47:51,852 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-02-12 12:48:30] 2026-02-12 11:47:51,900 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,900 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,900 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,901 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,901 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,901 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,901 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,901 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,901 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,901 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,901 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,901 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,902 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,902 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,902 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,902 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,902 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,902 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 12:48:30] 2026-02-12 11:47:51,902 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,902 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 12:48:30] 2026-02-12 11:47:51,902 | INFO     | job 7008552648 has completed (purged errors)
[2026-02-12 12:48:30] 2026-02-12 11:47:51,903 | INFO     | overall cleanup function is called
[2026-02-12 12:48:30] 2026-02-12 11:47:52,912 | INFO     | --- collectZombieJob: --- 10, [6699]
[2026-02-12 12:48:30] 2026-02-12 11:47:52,912 | INFO     | zombie collector waiting for pid 6699
[2026-02-12 12:48:30] 2026-02-12 11:47:52,912 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 12:48:30] 2026-02-12 11:47:52,912 | INFO     | collected zombie processes
[2026-02-12 12:48:30] 2026-02-12 11:47:52,912 | INFO     | will attempt to kill all subprocesses of pid=6699
[2026-02-12 12:48:30] 2026-02-12 11:47:53,006 | INFO     | process IDs to be killed: [6699] (in reverse order)
[2026-02-12 12:48:30] 2026-02-12 11:47:53,070 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 12:48:30] 2026-02-12 11:47:53,070 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 12:48:30] 2026-02-12 11:47:53,073 | INFO     | did not find any defunct processes belonging to 6699
[2026-02-12 12:48:30] 2026-02-12 11:47:53,076 | INFO     | did not find any defunct processes belonging to 6699
[2026-02-12 12:48:30] 2026-02-12 11:47:53,077 | INFO     | ready for new job
[2026-02-12 12:48:30] 2026-02-12 11:47:53,077 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 12:48:30] 2026-02-12 11:47:53,079 | INFO     | **************************************
[2026-02-12 12:48:30] 2026-02-12 11:47:53,079 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 12:48:30] 2026-02-12 11:47:53,079 | INFO     | **************************************
[2026-02-12 12:48:30] 2026-02-12 11:47:53,079 | INFO     | 
[2026-02-12 12:48:30] 2026-02-12 11:47:53,080 | INFO     | pilot is running in a VM
[2026-02-12 12:48:30] 2026-02-12 11:47:53,080 | INFO     | architecture information:
[2026-02-12 12:48:30] 2026-02-12 11:47:53,080 | INFO     | executing command: cat /etc/os-release
[2026-02-12 12:48:30] 2026-02-12 11:47:53,316 | INFO     | cat /etc/os-release:
[2026-02-12 12:48:30] NAME="CentOS Linux"
[2026-02-12 12:48:30] VERSION="7 (Core)"
[2026-02-12 12:48:30] ID="centos"
[2026-02-12 12:48:30] ID_LIKE="rhel fedora"
[2026-02-12 12:48:30] VERSION_ID="7"
[2026-02-12 12:48:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 12:48:30] ANSI_COLOR="0;31"
[2026-02-12 12:48:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 12:48:30] HOME_URL="https://www.centos.org/"
[2026-02-12 12:48:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 12:48:30] 
[2026-02-12 12:48:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 12:48:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 12:48:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 12:48:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 12:48:30] 
[2026-02-12 12:48:30] 2026-02-12 11:47:53,316 | INFO     | **************************************
[2026-02-12 12:48:30] 2026-02-12 11:47:53,820 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-02-12 12:48:30] 2026-02-12 11:47:53,917 | INFO     | sufficient remaining disk space (495457402880 B)
[2026-02-12 12:48:30] 2026-02-12 11:47:53,918 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 12:48:30] 2026-02-12 11:47:53,918 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 12:48:30] 2026-02-12 11:47:53,918 | INFO     | update_server=False
[2026-02-12 12:48:30] 2026-02-12 11:47:53,918 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 12:48:30] 2026-02-12 11:47:53,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 12:48:30] 2026-02-12 11:47:53,921 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 12:48:30] 2026-02-12 11:47:53,921 | INFO     | aborting loop
[2026-02-12 12:48:30] 2026-02-12 11:47:53,942 | INFO     | all payload control threads have been joined
[2026-02-12 12:48:30] 2026-02-12 11:47:54,178 | INFO     | all data control threads have been joined
[2026-02-12 12:48:30] 2026-02-12 11:47:54,924 | INFO     | [job] retrieve thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:54,926 | INFO     | [job] job monitor thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:54,948 | INFO     | [payload] control thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:54,989 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:55,184 | INFO     | [data] control thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:55,337 | INFO     | all job control threads have been joined
[2026-02-12 12:48:30] 2026-02-12 11:47:55,384 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:55,503 | INFO     | [job] validate thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:55,648 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:55,755 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:55,926 | INFO     | [data] copytool_out thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:56,039 | INFO     | [data] copytool_in thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:56,329 | INFO     | [payload] failed_post thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:56,329 | INFO     | [payload] validate_post thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:56,342 | INFO     | [job] control thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:47:56,871 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 12:48:30] 2026-02-12 11:47:57,394 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 12:48:30] 2026-02-12 11:47:57,877 | INFO     | [job] queue monitor thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:48:01,403 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 12:48:30] 2026-02-12 11:48:22,641 | INFO     | [monitor] cgroup control has ended
[2026-02-12 12:48:30] 2026-02-12 11:48:24,453 | INFO     | PID=2221 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-12 12:48:30] 2026-02-12 11:48:24,453 | INFO     | .. there are 9 such processes running
[2026-02-12 12:48:30] 2026-02-12 11:48:24,453 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 12:48:30] 2026-02-12 11:48:24,453 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 12:48:30] 2026-02-12 11:48:24,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 12:48:30] 2026-02-12 11:48:24,733 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140438101292864)>', '<ExcThread(monitor, started 140437436229376)>']
[2026-02-12 12:48:30] 2026-02-12 11:48:25,459 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 12:48:30] 2026-02-12 11:48:25,459 | INFO     | [monitor] control thread has ended
[2026-02-12 12:48:30] 2026-02-12 11:48:29,759 | INFO     | all workflow threads have been joined
[2026-02-12 12:48:30] 2026-02-12 11:48:29,759 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 12:48:30] 2026-02-12 11:48:29,760 | INFO     | traces error code: 0
[2026-02-12 12:48:30] 2026-02-12 11:48:29,760 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 12:48:30] 2026-02-12 11:48:29,963 [wrapper] ==== pilot stdout END ====
[2026-02-12 12:48:30] 2026-02-12 11:48:29,991 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 12:48:30] 2026-02-12 11:48:30,062 [wrapper] pilotpid: 2221
[2026-02-12 12:48:30] 2026-02-12 11:48:30,083 [wrapper] Pilot exit status: 0
[2026-02-12 12:48:30] 2026-02-12 11:48:30,121 [wrapper] pandaids: 7008552648
[2026-02-12 12:48:30] 2026-02-12 11:48:30,155 [wrapper] cleanup supervisor_pilot 15059 2222
[2026-02-12 12:48:30] 2026-02-12 11:48:30,169 [wrapper] Test setup, not cleaning
[2026-02-12 12:48:30] 2026-02-12 11:48:30,173 [wrapper] apfmon messages muted
[2026-02-12 12:48:30] 2026-02-12 11:48:30,178 [wrapper] ==== wrapper stdout END ====
[2026-02-12 12:48:30] 2026-02-12 11:48:30,182 [wrapper] ==== wrapper stderr END ====
[2026-02-12 12:48:30]  *** Error codes and diagnostics ***
[2026-02-12 12:48:30]     "exeErrorCode": 0,
[2026-02-12 12:48:30]     "exeErrorDiag": "",
[2026-02-12 12:48:30]     "pilotErrorCode": 0,
[2026-02-12 12:48:30]     "pilotErrorDiag": "",
[2026-02-12 12:48:30]  *** Listing of results directory ***
[2026-02-12 12:48:30] total 669800
[2026-02-12 12:48:30] -rw-r--r--. 1 boinc boinc    584627 Feb 11 11:53 pilot3.tar.gz
[2026-02-12 12:48:30] -rwx------. 1 boinc boinc     36322 Feb 11 11:56 runpilot2-wrapper.sh
[2026-02-12 12:48:30] -rw-r--r--. 1 boinc boinc      5111 Feb 11 11:56 queuedata.json
[2026-02-12 12:48:30] -rw-r--r--. 1 boinc boinc       100 Feb 12 08:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 12:48:30] -rwxr-xr-x. 1 boinc boinc      7986 Feb 12 08:43 run_atlas
[2026-02-12 12:48:30] -rw-r--r--. 1 boinc boinc       105 Feb 12 08:43 job.xml
[2026-02-12 12:48:30] -rw-r--r--. 1 boinc boinc      6392 Feb 12 08:43 init_data.xml
[2026-02-12 12:48:30] -rw-r--r--. 2 boinc boinc 492465323 Feb 12 08:43 EVNT.48318032._000307.pool.root.1
[2026-02-12 12:48:30] -rw-r--r--. 2 boinc boinc     15845 Feb 12 08:43 start_atlas.sh
[2026-02-12 12:48:30] drwxrwx--x. 2 boinc boinc        68 Feb 12 08:43 shared
[2026-02-12 12:48:30] -rw-r--r--. 2 boinc boinc    597961 Feb 12 08:43 input.tar.gz
[2026-02-12 12:48:30] -rw-r--r--. 1 boinc boinc         0 Feb 12 08:43 boinc_lockfile
[2026-02-12 12:48:30] -rw-r--r--. 1 boinc boinc      2537 Feb 12 08:43 pandaJob.out
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc       415 Feb 12 08:48 workernode_map.json
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc   1004342 Feb 12 08:48 agis_schedconf.cvmfs.json
[2026-02-12 12:48:30] drwx------. 5 boinc boinc      4096 Feb 12 08:48 pilot3
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc 184567594 Feb 12 12:47 HITS.48318034._016618.pool.root.1
[2026-02-12 12:48:30] -rw-r--r--. 1 boinc boinc       532 Feb 12 12:47 boinc_task_state.xml
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc      1012 Feb 12 12:47 memory_monitor_summary.json
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc        95 Feb 12 12:47 pilot_heartbeat.json
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc   1512955 Feb 12 12:47 agis_ddmendpoints.agis.ALL.json
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc    461506 Feb 12 12:47 log.48318034._016618.job.log.tgz.1
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc      6319 Feb 12 12:47 heartbeat.json
[2026-02-12 12:48:30] -rw-r--r--. 1 boinc boinc      8192 Feb 12 12:48 boinc_mmap_file
[2026-02-12 12:48:30] -rw-r--r--. 1 boinc boinc        28 Feb 12 12:48 wrapper_checkpoint.txt
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc      4880 Feb 12 12:48 pilotlog.txt
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc   2002046 Feb 12 12:48 log.48318034._016618.job.log.1
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc       357 Feb 12 12:48 output.list
[2026-02-12 12:48:30] -rw-r--r--. 1 boinc boinc       620 Feb 12 12:48 runtime_log
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc   2478080 Feb 12 12:48 result.tar.gz
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc       656 Feb 12 12:48 sfPKDme4MA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmFBkKDmHaAbkm.diag
[2026-02-12 12:48:30] -rw-r--r--. 1 boinc boinc      8832 Feb 12 12:48 runtime_log.err
[2026-02-12 12:48:30] -rw-r--r--. 1 boinc boinc     20553 Feb 12 12:48 stderr.txt
[2026-02-12 12:48:30] HITS file was successfully produced:
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc 184567594 Feb 12 12:47 shared/HITS.pool.root.1
[2026-02-12 12:48:30]  *** Contents of shared directory: ***
[2026-02-12 12:48:30] total 664188
[2026-02-12 12:48:30] -rw-r--r--. 2 boinc boinc 492465323 Feb 12 08:43 ATLAS.root_0
[2026-02-12 12:48:30] -rw-r--r--. 2 boinc boinc     15845 Feb 12 08:43 start_atlas.sh
[2026-02-12 12:48:30] -rw-r--r--. 2 boinc boinc    597961 Feb 12 08:43 input.tar.gz
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc 184567594 Feb 12 12:47 HITS.pool.root.1
[2026-02-12 12:48:30] -rw-------. 1 boinc boinc   2478080 Feb 12 12:48 result.tar.gz
12:48:31 (30513): run_atlas exited; CPU time 55599.216443
12:48:31 (30513): called boinc_finish(0)

</stderr_txt>
]]>

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