Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:14:12 (22094): wrapper (7.7.26015): starting
06:14:12 (22094): wrapper: running run_atlas (--nthreads 8)
[2026-02-12 06:14:12] Arguments: --nthreads 8
[2026-02-12 06:14:12] Threads: 8
[2026-02-12 06:14:12] Checking for CVMFS
[2026-02-12 06:14:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 06:14:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 06:14:15] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 06:14:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 06:14:17] 2.11.2.0 20801 83924 110204 156140 2 54 12682824 25165825 4784 130560 0 41012807 99.865 26650280 3283 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-12 06:14:17] CVMFS is ok
[2026-02-12 06:14:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 06:14:17] Checking for apptainer binary...
[2026-02-12 06:14:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 06:14:17] Running /usr/bin/apptainer --version
[2026-02-12 06:14:17] apptainer version 1.3.2-1.el7
[2026-02-12 06:14:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 06:14:21] cg-vwn472.simple-grid.lan
[2026-02-12 06:14:21] apptainer works
[2026-02-12 06:14:21] Set ATHENA_PROC_NUMBER=8
[2026-02-12 06:14:21] Set ATHENA_CORE_NUMBER=8
[2026-02-12 06:14:21] Starting ATLAS job with PandaID=7008682383
[2026-02-12 06:14:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 10:06:30]  *** The last 200 lines of the pilot log: ***
[2026-02-12 10:06:30] 2026-02-12 09:05:17,824 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-12 10:06:30] 2026-02-12 09:05:17,824 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-12 10:06:30] 2026-02-12 09:05:17,829 | INFO     | fitting pss+swap vs Time
[2026-02-12 10:06:30] 2026-02-12 09:05:17,829 | INFO     | sum of square deviations: 3212467674.5
[2026-02-12 10:06:30] 2026-02-12 09:05:17,831 | INFO     | sum of deviations: 28806526418.0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,831 | INFO     | mean x: 1770880486.5
[2026-02-12 10:06:30] 2026-02-12 09:05:17,831 | INFO     | mean y: 2479335.0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,831 | INFO     | intersect: -15877187228.624731
[2026-02-12 10:06:30] 2026-02-12 09:05:17,832 | INFO     | chi2: 5.8686168544351105
[2026-02-12 10:06:30] 2026-02-12 09:05:17,832 | INFO     | sum of square deviations: 2996454322.0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,834 | INFO     | sum of deviations: 42610102713.99998
[2026-02-12 10:06:30] 2026-02-12 09:05:17,834 | INFO     | mean x: 1770880334.0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,834 | INFO     | mean y: 2488890.6244131457
[2026-02-12 10:06:30] 2026-02-12 09:05:17,834 | INFO     | intersect: -25179738107.442467
[2026-02-12 10:06:30] 2026-02-12 09:05:17,835 | INFO     | chi2: 5.151732481491721
[2026-02-12 10:06:30] 2026-02-12 09:05:17,835 | INFO     | current chi2=5.151732481491721 (change=12.215559317041047 %)
[2026-02-12 10:06:30] 2026-02-12 09:05:17,835 | INFO     | right removable region: 212
[2026-02-12 10:06:30] 2026-02-12 09:05:17,835 | INFO     | sum of square deviations: 2996454322.0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,837 | INFO     | sum of deviations: -44115776511.00001
[2026-02-12 10:06:30] 2026-02-12 09:05:17,837 | INFO     | mean x: 1770880639.0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,837 | INFO     | mean y: 2530757.8497652584
[2026-02-12 10:06:30] 2026-02-12 09:05:17,838 | INFO     | intersect: 26074603315.136986
[2026-02-12 10:06:30] 2026-02-12 09:05:17,838 | INFO     | chi2: 1.524289806593324
[2026-02-12 10:06:30] 2026-02-12 09:05:17,838 | INFO     | current chi2=1.524289806593324 (change=74.0264214822379 %)
[2026-02-12 10:06:30] 2026-02-12 09:05:17,839 | INFO     | sum of square deviations: 2790348132.0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,840 | INFO     | sum of deviations: -62562541961.999985
[2026-02-12 10:06:30] 2026-02-12 09:05:17,841 | INFO     | mean x: 1770880791.5
[2026-02-12 10:06:30] 2026-02-12 09:05:17,841 | INFO     | mean y: 2544258.1826923075
[2026-02-12 10:06:30] 2026-02-12 09:05:17,841 | INFO     | intersect: 39707555456.37626
[2026-02-12 10:06:30] 2026-02-12 09:05:17,841 | INFO     | chi2: 0.9877961603161818
[2026-02-12 10:06:30] 2026-02-12 09:05:17,841 | INFO     | current chi2=0.9877961603161818 (change=35.19630217013431 %)
[2026-02-12 10:06:30] 2026-02-12 09:05:17,842 | INFO     | sum of square deviations: 2593916542.0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,843 | INFO     | sum of deviations: -57032380476.99998
[2026-02-12 10:06:30] 2026-02-12 09:05:17,843 | INFO     | mean x: 1770880944.0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,843 | INFO     | mean y: 2539958.9261083743
[2026-02-12 10:06:30] 2026-02-12 09:05:17,844 | INFO     | intersect: 38938856583.74868
[2026-02-12 10:06:30] 2026-02-12 09:05:17,844 | INFO     | chi2: 0.9855539124503883
[2026-02-12 10:06:30] 2026-02-12 09:05:17,844 | INFO     | current chi2=0.9855539124503883 (change=0.22699499713339705 %)
[2026-02-12 10:06:30] 2026-02-12 09:05:17,844 | INFO     | left removable region: 30
[2026-02-12 10:06:30] 2026-02-12 09:05:17,845 | INFO     | sum of square deviations: 1869302025.5
[2026-02-12 10:06:30] 2026-02-12 09:05:17,846 | INFO     | sum of deviations: -22789698332.0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,846 | INFO     | mean x: 1770881218.5
[2026-02-12 10:06:30] 2026-02-12 09:05:17,846 | INFO     | mean y: 2534290.967032967
[2026-02-12 10:06:30] 2026-02-12 09:05:17,846 | INFO     | intersect: 21592329947.784275
[2026-02-12 10:06:30] 2026-02-12 09:05:17,847 | INFO     | chi2: 0.15312444083305676
[2026-02-12 10:06:30] 2026-02-12 09:05:17,847 | INFO     | current memory leak: -12.19 B/s (using 182 data points, chi2=0.15)
[2026-02-12 10:06:30] 2026-02-12 09:05:17,850 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2026-02-12 10:06:30] 2026-02-12 09:05:17,851 | INFO     | ..............................
[2026-02-12 10:06:30] 2026-02-12 09:05:17,851 | INFO     | . Timing measurements:
[2026-02-12 10:06:30] 2026-02-12 09:05:17,851 | INFO     | . get job = 0 s
[2026-02-12 10:06:30] 2026-02-12 09:05:17,851 | INFO     | . initial setup = 103 s
[2026-02-12 10:06:30] 2026-02-12 09:05:17,851 | INFO     | . payload setup = 138 s
[2026-02-12 10:06:30] 2026-02-12 09:05:17,851 | INFO     | . stage-in = 0 s
[2026-02-12 10:06:30] 2026-02-12 09:05:17,851 | INFO     | . payload execution = 13362 s
[2026-02-12 10:06:30] 2026-02-12 09:05:17,851 | INFO     | . stage-out = 2 s
[2026-02-12 10:06:30] 2026-02-12 09:05:17,852 | INFO     | . log creation = 1 s
[2026-02-12 10:06:30] 2026-02-12 09:05:17,852 | INFO     | ..............................
[2026-02-12 10:06:30] 2026-02-12 09:05:17,960 | INFO     | 
[2026-02-12 10:06:30] 2026-02-12 09:05:17,961 | INFO     | job summary report
[2026-02-12 10:06:30] 2026-02-12 09:05:17,961 | INFO     | --------------------------------------------------
[2026-02-12 10:06:30] 2026-02-12 09:05:17,961 | INFO     | PanDA job id: 7008682383
[2026-02-12 10:06:30] 2026-02-12 09:05:17,961 | INFO     | task id: 48442098
[2026-02-12 10:06:30] 2026-02-12 09:05:17,961 | INFO     | errors: (none)
[2026-02-12 10:06:30] 2026-02-12 09:05:17,961 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-12 10:06:30] 2026-02-12 09:05:17,961 | INFO     | pilot state: finished 
[2026-02-12 10:06:30] 2026-02-12 09:05:17,961 | INFO     | transexitcode: 0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,962 | INFO     | exeerrorcode: 0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,962 | INFO     | exeerrordiag: 
[2026-02-12 10:06:30] 2026-02-12 09:05:17,962 | INFO     | exitcode: 0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,962 | INFO     | exitmsg: OK
[2026-02-12 10:06:30] 2026-02-12 09:05:17,962 | INFO     | cpuconsumptiontime: 51051 s
[2026-02-12 10:06:30] 2026-02-12 09:05:17,962 | INFO     | nevents: 400
[2026-02-12 10:06:30] 2026-02-12 09:05:17,962 | INFO     | neventsw: 0
[2026-02-12 10:06:30] 2026-02-12 09:05:17,962 | INFO     | pid: 30763
[2026-02-12 10:06:30] 2026-02-12 09:05:17,962 | INFO     | pgrp: 30763
[2026-02-12 10:06:30] 2026-02-12 09:05:17,963 | INFO     | corecount: 8
[2026-02-12 10:06:30] 2026-02-12 09:05:17,963 | INFO     | event service: False
[2026-02-12 10:06:30] 2026-02-12 09:05:17,963 | INFO     | sizes: {0: 2281727, 1: 2281811, 2: 2282272, 12: 2282272, 13504: 2312505, 13508: 2321687, 13509: 2321825}
[2026-02-12 10:06:30] 2026-02-12 09:05:17,963 | INFO     | --------------------------------------------------
[2026-02-12 10:06:30] 2026-02-12 09:05:17,963 | INFO     | 
[2026-02-12 10:06:30] 2026-02-12 09:05:17,963 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-02-12 10:06:30] 2026-02-12 09:05:18,505 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,505 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,505 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,505 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,506 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,506 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,506 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,506 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,506 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,506 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,506 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,506 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,507 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,507 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,507 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,507 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,507 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,507 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 10:06:30] 2026-02-12 09:05:18,507 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,507 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 10:06:30] 2026-02-12 09:05:18,507 | INFO     | job 7008682383 has completed (purged errors)
[2026-02-12 10:06:30] 2026-02-12 09:05:18,508 | INFO     | overall cleanup function is called
[2026-02-12 10:06:30] 2026-02-12 09:05:18,961 | WARNING  | process 30763 can no longer be monitored (due to stat problems) - aborting
[2026-02-12 10:06:30] 2026-02-12 09:05:19,051 | INFO     | using path: /var/lib/boinc/slots/7/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 10:06:30] 2026-02-12 09:05:19,155 | INFO     | number of running child processes to parent process 30763: 1
[2026-02-12 10:06:30] 2026-02-12 09:05:19,156 | INFO     | maximum number of monitored processes: 8
[2026-02-12 10:06:30] 2026-02-12 09:05:19,156 | INFO     | aborting job monitoring since job object (job id=7008682383) has expired
[2026-02-12 10:06:30] 2026-02-12 09:05:19,516 | INFO     | --- collectZombieJob: --- 10, [30763]
[2026-02-12 10:06:30] 2026-02-12 09:05:19,516 | INFO     | zombie collector waiting for pid 30763
[2026-02-12 10:06:30] 2026-02-12 09:05:19,517 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 10:06:30] 2026-02-12 09:05:19,517 | INFO     | collected zombie processes
[2026-02-12 10:06:30] 2026-02-12 09:05:19,517 | INFO     | will attempt to kill all subprocesses of pid=30763
[2026-02-12 10:06:30] 2026-02-12 09:05:19,629 | INFO     | process IDs to be killed: [30763] (in reverse order)
[2026-02-12 10:06:30] 2026-02-12 09:05:20,472 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 10:06:30] 2026-02-12 09:05:20,472 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 10:06:30] 2026-02-12 09:05:20,475 | INFO     | did not find any defunct processes belonging to 30763
[2026-02-12 10:06:30] 2026-02-12 09:05:20,478 | INFO     | did not find any defunct processes belonging to 30763
[2026-02-12 10:06:30] 2026-02-12 09:05:20,478 | INFO     | ready for new job
[2026-02-12 10:06:30] 2026-02-12 09:05:20,478 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 10:06:30] 2026-02-12 09:05:20,480 | INFO     | **************************************
[2026-02-12 10:06:30] 2026-02-12 09:05:20,480 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 10:06:30] 2026-02-12 09:05:20,480 | INFO     | **************************************
[2026-02-12 10:06:30] 2026-02-12 09:05:20,480 | INFO     | 
[2026-02-12 10:06:30] 2026-02-12 09:05:20,481 | INFO     | pilot is running in a VM
[2026-02-12 10:06:30] 2026-02-12 09:05:20,481 | INFO     | architecture information:
[2026-02-12 10:06:30] 2026-02-12 09:05:20,491 | INFO     | executing command: cat /etc/os-release
[2026-02-12 10:06:30] 2026-02-12 09:05:20,827 | INFO     | cat /etc/os-release:
[2026-02-12 10:06:30] NAME="CentOS Linux"
[2026-02-12 10:06:30] VERSION="7 (Core)"
[2026-02-12 10:06:30] ID="centos"
[2026-02-12 10:06:30] ID_LIKE="rhel fedora"
[2026-02-12 10:06:30] VERSION_ID="7"
[2026-02-12 10:06:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 10:06:30] ANSI_COLOR="0;31"
[2026-02-12 10:06:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 10:06:30] HOME_URL="https://www.centos.org/"
[2026-02-12 10:06:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 10:06:30] 
[2026-02-12 10:06:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 10:06:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 10:06:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 10:06:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 10:06:30] 
[2026-02-12 10:06:30] 2026-02-12 09:05:20,827 | INFO     | **************************************
[2026-02-12 10:06:30] 2026-02-12 09:05:21,329 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-02-12 10:06:30] 2026-02-12 09:05:21,568 | INFO     | sufficient remaining disk space (495220424704 B)
[2026-02-12 10:06:30] 2026-02-12 09:05:21,568 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 10:06:30] 2026-02-12 09:05:21,569 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 10:06:30] 2026-02-12 09:05:21,569 | INFO     | update_server=False
[2026-02-12 10:06:30] 2026-02-12 09:05:21,569 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 10:06:30] 2026-02-12 09:05:21,661 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-12 10:06:30] 2026-02-12 09:05:21,661 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-12 10:06:30] 2026-02-12 09:05:21,662 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 10:06:30] 2026-02-12 09:05:21,662 | INFO     | will abort loop
[2026-02-12 10:06:30] 2026-02-12 09:05:21,757 | INFO     | all data control threads have been joined
[2026-02-12 10:06:30] 2026-02-12 09:05:21,999 | INFO     | all job control threads have been joined
[2026-02-12 10:06:30] 2026-02-12 09:05:22,168 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 10:06:30] 2026-02-12 09:05:22,174 | INFO     | all payload control threads have been joined
[2026-02-12 10:06:30] 2026-02-12 09:05:22,575 | INFO     | [job] retrieve thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:22,667 | INFO     | [job] job monitor thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:22,741 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:22,763 | INFO     | [data] control thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:22,769 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 10:06:30] 2026-02-12 09:05:22,999 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 10:06:30] 2026-02-12 09:05:23,005 | INFO     | [job] control thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:23,180 | INFO     | [payload] control thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:23,187 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:23,269 | INFO     | [data] copytool_in thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:23,334 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:23,451 | INFO     | [payload] validate_post thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:23,511 | INFO     | [payload] failed_post thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:23,799 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:23,863 | INFO     | [job] validate thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:24,005 | INFO     | [job] queue monitor thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:24,174 | INFO     | [data] copytool_out thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:26,778 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 10:06:30] 2026-02-12 09:05:50,962 | INFO     | PID=26236 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-12 10:06:30] 2026-02-12 09:05:50,963 | INFO     | .. there are 9 such processes running
[2026-02-12 10:06:30] 2026-02-12 09:05:50,963 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 10:06:30] 2026-02-12 09:05:50,963 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 10:06:30] 2026-02-12 09:05:50,963 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 10:06:30] 2026-02-12 09:06:19,659 | INFO     | [monitor] cgroup control has ended
[2026-02-12 10:06:30] 2026-02-12 09:06:20,221 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140683846084416)>', '<ExcThread(monitor, started 140683549579008)>']
[2026-02-12 10:06:30] 2026-02-12 09:06:21,141 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 10:06:30] 2026-02-12 09:06:21,141 | INFO     | [monitor] control thread has ended
[2026-02-12 10:06:30] 2026-02-12 09:06:25,247 | INFO     | all workflow threads have been joined
[2026-02-12 10:06:30] 2026-02-12 09:06:25,247 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 10:06:30] 2026-02-12 09:06:25,248 | INFO     | traces error code: 0
[2026-02-12 10:06:30] 2026-02-12 09:06:25,248 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 10:06:30] 2026-02-12 09:06:25,559 [wrapper] ==== pilot stdout END ====
[2026-02-12 10:06:30] 2026-02-12 09:06:25,630 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 10:06:30] 2026-02-12 09:06:25,707 [wrapper] pilotpid: 26236
[2026-02-12 10:06:30] 2026-02-12 09:06:25,735 [wrapper] Pilot exit status: 0
[2026-02-12 10:06:30] 2026-02-12 09:06:26,212 [wrapper] pandaids: 7008682383
[2026-02-12 10:06:30] 2026-02-12 09:06:27,249 [wrapper] cleanup supervisor_pilot 21839 26237
[2026-02-12 10:06:30] 2026-02-12 09:06:27,301 [wrapper] Test setup, not cleaning
[2026-02-12 10:06:30] 2026-02-12 09:06:27,356 [wrapper] apfmon messages muted
[2026-02-12 10:06:30] 2026-02-12 09:06:27,412 [wrapper] ==== wrapper stdout END ====
[2026-02-12 10:06:30] 2026-02-12 09:06:27,461 [wrapper] ==== wrapper stderr END ====
[2026-02-12 10:06:30]  *** Error codes and diagnostics ***
[2026-02-12 10:06:30]     "exeErrorCode": 0,
[2026-02-12 10:06:30]     "exeErrorDiag": "",
[2026-02-12 10:06:30]     "pilotErrorCode": 0,
[2026-02-12 10:06:30]     "pilotErrorDiag": "",
[2026-02-12 10:06:30]  *** Listing of results directory ***
[2026-02-12 10:06:30] total 667072
[2026-02-12 10:06:30] -rw-r--r--. 1 boinc boinc    584627 Feb 11 14:18 pilot3.tar.gz
[2026-02-12 10:06:30] -rwx------. 1 boinc boinc     36322 Feb 11 14:20 runpilot2-wrapper.sh
[2026-02-12 10:06:30] -rw-r--r--. 1 boinc boinc      5111 Feb 11 14:21 queuedata.json
[2026-02-12 10:06:30] -rw-r--r--. 1 boinc boinc       100 Feb 12 06:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 10:06:30] -rwxr-xr-x. 1 boinc boinc      7986 Feb 12 06:14 run_atlas
[2026-02-12 10:06:30] -rw-r--r--. 1 boinc boinc       105 Feb 12 06:14 job.xml
[2026-02-12 10:06:30] -rw-r--r--. 2 boinc boinc 492987572 Feb 12 06:14 EVNT.48442096._000115.pool.root.1
[2026-02-12 10:06:30] -rw-r--r--. 2 boinc boinc    597960 Feb 12 06:14 input.tar.gz
[2026-02-12 10:06:30] -rw-r--r--. 1 boinc boinc      6391 Feb 12 06:14 init_data.xml
[2026-02-12 10:06:30] -rw-r--r--. 2 boinc boinc     15845 Feb 12 06:14 start_atlas.sh
[2026-02-12 10:06:30] drwxrwx--x. 2 boinc boinc        68 Feb 12 06:14 shared
[2026-02-12 10:06:30] -rw-r--r--. 1 boinc boinc         0 Feb 12 06:14 boinc_lockfile
[2026-02-12 10:06:30] -rw-r--r--. 1 boinc boinc      2525 Feb 12 06:14 pandaJob.out
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc       415 Feb 12 06:19 workernode_map.json
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc   1004345 Feb 12 06:19 agis_schedconf.cvmfs.json
[2026-02-12 10:06:30] drwx------. 5 boinc boinc      4096 Feb 12 06:19 pilot3
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc 181516109 Feb 12 10:04 HITS.48442098._006526.pool.root.1
[2026-02-12 10:06:30] -rw-r--r--. 1 boinc boinc       532 Feb 12 10:04 boinc_task_state.xml
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc        95 Feb 12 10:05 pilot_heartbeat.json
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc      1029 Feb 12 10:05 memory_monitor_summary.json
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc   1512955 Feb 12 10:05 agis_ddmendpoints.agis.ALL.json
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc    434730 Feb 12 10:05 log.48442098._006526.job.log.tgz.1
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc      6317 Feb 12 10:05 heartbeat.json
[2026-02-12 10:06:30] -rw-r--r--. 1 boinc boinc      8192 Feb 12 10:06 boinc_mmap_file
[2026-02-12 10:06:30] -rw-r--r--. 1 boinc boinc        28 Feb 12 10:06 wrapper_checkpoint.txt
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc      5066 Feb 12 10:06 pilotlog.txt
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc   1891514 Feb 12 10:06 log.48442098._006526.job.log.1
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc       357 Feb 12 10:06 output.list
[2026-02-12 10:06:30] -rw-r--r--. 1 boinc boinc       620 Feb 12 10:06 runtime_log
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc   2344960 Feb 12 10:06 result.tar.gz
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc       656 Feb 12 10:06 ywMNDm9JPA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmaKkKDm6iRCdm.diag
[2026-02-12 10:06:30] -rw-r--r--. 1 boinc boinc      8816 Feb 12 10:06 runtime_log.err
[2026-02-12 10:06:30] -rw-r--r--. 1 boinc boinc     20756 Feb 12 10:06 stderr.txt
[2026-02-12 10:06:30] HITS file was successfully produced:
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc 181516109 Feb 12 10:04 shared/HITS.pool.root.1
[2026-02-12 10:06:30]  *** Contents of shared directory: ***
[2026-02-12 10:06:30] total 661592
[2026-02-12 10:06:30] -rw-r--r--. 2 boinc boinc 492987572 Feb 12 06:14 ATLAS.root_0
[2026-02-12 10:06:30] -rw-r--r--. 2 boinc boinc    597960 Feb 12 06:14 input.tar.gz
[2026-02-12 10:06:30] -rw-r--r--. 2 boinc boinc     15845 Feb 12 06:14 start_atlas.sh
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc 181516109 Feb 12 10:04 HITS.pool.root.1
[2026-02-12 10:06:30] -rw-------. 1 boinc boinc   2344960 Feb 12 10:06 result.tar.gz
10:06:31 (22094): run_atlas exited; CPU time 51233.899796
10:06:31 (22094): called boinc_finish(0)

</stderr_txt>
]]>

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