Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:41:13 (616659): wrapper (7.7.26015): starting
11:41:13 (616659): wrapper: running run_atlas (--nthreads 4)
[2026-02-12 11:41:13] Arguments: --nthreads 4
[2026-02-12 11:41:13] Threads: 4
[2026-02-12 11:41:13] Checking for CVMFS
[2026-02-12 11:41:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 11:41:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 11:41:13] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 11:41:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 11:41:13] 2.9.2.0 3036 4042 95680 156152 2 50 25607963 36864000 0 130560 0 1719840 99.985 133131 2686 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-12 11:41:13] CVMFS is ok
[2026-02-12 11:41:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 11:41:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 11:41:13] Further information can be found at the LHC@home message board.
[2026-02-12 11:41:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 11:41:13] Checking for apptainer binary...
[2026-02-12 11:41:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 11:41:13] Running /usr/bin/apptainer --version
[2026-02-12 11:41:13] apptainer version 1.4.1-1.1
[2026-02-12 11:41:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 11:41:13] thA334
[2026-02-12 11:41:13] apptainer works
[2026-02-12 11:41:14] Set ATHENA_PROC_NUMBER=4
[2026-02-12 11:41:14] Set ATHENA_CORE_NUMBER=4
[2026-02-12 11:41:14] Starting ATLAS job with PandaID=7008681526
[2026-02-12 11:41:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 12:49:49]  *** The last 200 lines of the pilot log: ***
[2026-02-12 12:49:49] 2026-02-12 11:49:16,647 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 12:49:49] 2026-02-12 11:49:16,647 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 12:49:49] 2026-02-12 11:49:16,647 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 12:49:49] 2026-02-12 11:49:16,647 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 12:49:49] 2026-02-12 11:49:16,647 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 12:49:49] 2026-02-12 11:49:16,647 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 12:49:49] 2026-02-12 11:49:16,647 | INFO     | job 7008681526 has completed (purged errors)
[2026-02-12 12:49:49] 2026-02-12 11:49:16,648 | INFO     | overall cleanup function is called
[2026-02-12 12:49:49] 2026-02-12 11:49:16,914 | INFO     | PID=620758 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-12 12:49:49] 2026-02-12 11:49:17,654 | INFO     | --- collectZombieJob: --- 10, [625268]
[2026-02-12 12:49:49] 2026-02-12 11:49:17,654 | INFO     | zombie collector waiting for pid 625268
[2026-02-12 12:49:49] 2026-02-12 11:49:17,655 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 12:49:49] 2026-02-12 11:49:17,655 | INFO     | collected zombie processes
[2026-02-12 12:49:49] 2026-02-12 11:49:17,655 | INFO     | will attempt to kill all subprocesses of pid=625268
[2026-02-12 12:49:49] 2026-02-12 11:49:17,696 | INFO     | process IDs to be killed: [625268] (in reverse order)
[2026-02-12 12:49:49] 2026-02-12 11:49:17,727 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 12:49:49] 2026-02-12 11:49:17,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 12:49:49] 2026-02-12 11:49:17,728 | INFO     | did not find any defunct processes belonging to 625268
[2026-02-12 12:49:49] 2026-02-12 11:49:17,729 | INFO     | did not find any defunct processes belonging to 625268
[2026-02-12 12:49:49] 2026-02-12 11:49:17,730 | INFO     | ready for new job
[2026-02-12 12:49:49] 2026-02-12 11:49:17,730 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 12:49:49] 2026-02-12 11:49:17,730 | INFO     | **************************************
[2026-02-12 12:49:49] 2026-02-12 11:49:17,730 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 12:49:49] 2026-02-12 11:49:17,730 | INFO     | **************************************
[2026-02-12 12:49:49] 2026-02-12 11:49:17,730 | INFO     | 
[2026-02-12 12:49:49] 2026-02-12 11:49:17,731 | INFO     | architecture information:
[2026-02-12 12:49:49] 2026-02-12 11:49:17,731 | INFO     | executing command: cat /etc/os-release
[2026-02-12 12:49:49] 2026-02-12 11:49:17,744 | INFO     | cat /etc/os-release:
[2026-02-12 12:49:49] NAME="CentOS Linux"
[2026-02-12 12:49:49] VERSION="7 (Core)"
[2026-02-12 12:49:49] ID="centos"
[2026-02-12 12:49:49] ID_LIKE="rhel fedora"
[2026-02-12 12:49:49] VERSION_ID="7"
[2026-02-12 12:49:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 12:49:49] ANSI_COLOR="0;31"
[2026-02-12 12:49:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 12:49:49] HOME_URL="https://www.centos.org/"
[2026-02-12 12:49:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 12:49:49] 
[2026-02-12 12:49:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 12:49:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 12:49:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 12:49:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 12:49:49] 
[2026-02-12 12:49:49] 2026-02-12 11:49:17,744 | INFO     | **************************************
[2026-02-12 12:49:49] 2026-02-12 11:49:18,247 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-12 12:49:49] 2026-02-12 11:49:18,263 | INFO     | sufficient remaining disk space (229525946368 B)
[2026-02-12 12:49:49] 2026-02-12 11:49:18,264 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 12:49:49] 2026-02-12 11:49:18,264 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 12:49:49] 2026-02-12 11:49:18,264 | INFO     | update_server=False
[2026-02-12 12:49:49] 2026-02-12 11:49:18,264 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 12:49:49] 2026-02-12 11:49:18,264 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 12:49:49] 2026-02-12 11:49:18,264 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 12:49:49] 2026-02-12 11:49:18,264 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 12:49:49] 2026-02-12 11:49:18,679 | INFO     | all data control threads have been joined
[2026-02-12 12:49:49] 2026-02-12 11:49:18,742 | INFO     | all payload control threads have been joined
[2026-02-12 12:49:49] 2026-02-12 11:49:19,267 | WARNING  | process 625268 can no longer be monitored (due to stat problems) - aborting
[2026-02-12 12:49:49] 2026-02-12 11:49:19,269 | INFO     | [job] retrieve thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:19,270 | INFO     | [job] queue monitor thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:19,298 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 12:49:49] 2026-02-12 11:49:19,336 | INFO     | number of running child processes to parent process 625268: 1
[2026-02-12 12:49:49] 2026-02-12 11:49:19,336 | INFO     | maximum number of monitored processes: 6
[2026-02-12 12:49:49] 2026-02-12 11:49:19,336 | INFO     | aborting job monitoring since job object (job id=7008681526) has expired
[2026-02-12 12:49:49] 2026-02-12 11:49:19,336 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 12:49:49] 2026-02-12 11:49:19,336 | INFO     | will abort loop
[2026-02-12 12:49:49] 2026-02-12 11:49:19,348 | INFO     | [payload] failed_post thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:19,456 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:19,472 | INFO     | job.realtimelogging is not enabled
[2026-02-12 12:49:49] 2026-02-12 11:49:19,685 | INFO     | [data] control thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:19,748 | INFO     | [payload] control thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:19,764 | INFO     | all job control threads have been joined
[2026-02-12 12:49:49] 2026-02-12 11:49:19,834 | INFO     | [payload] validate_post thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:20,207 | INFO     | [job] validate thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:20,208 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:20,270 | INFO     | [data] copytool_out thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:20,325 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:20,341 | INFO     | [job] job monitor thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:20,474 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:20,527 | INFO     | [data] copytool_in thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:20,770 | INFO     | [job] control thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:22,271 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 12:49:49] 2026-02-12 11:49:32,666 | INFO     | [monitor] cgroup control has ended
[2026-02-12 12:49:49] 2026-02-12 11:49:32,775 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140632959674176)>', '<ExcThread(monitor, started 140632177760000)>']
[2026-02-12 12:49:49] 2026-02-12 11:49:37,801 | INFO     | all workflow threads have been joined
[2026-02-12 12:49:49] 2026-02-12 11:49:37,801 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 12:49:49] 2026-02-12 11:49:37,801 | INFO     | traces error code: 0
[2026-02-12 12:49:49] 2026-02-12 11:49:37,802 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 12:49:49] 2026-02-12 11:49:49,046 | INFO     | PID=620758 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-12 12:49:49] 2026-02-12 11:49:49,046 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 12:49:49] 2026-02-12 11:49:49,046 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 12:49:49] 2026-02-12 11:49:49,046 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 12:49:49] 2026-02-12 11:49:49,046 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 12:49:49] 2026-02-12 11:49:49,046 | INFO     | [monitor] control thread has ended
[2026-02-12 12:49:49] 2026-02-12 11:49:49,112 [wrapper] ==== pilot stdout END ====
[2026-02-12 12:49:49] 2026-02-12 11:49:49,115 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 12:49:49] 2026-02-12 11:49:49,119 [wrapper] pilotpid: 620758
[2026-02-12 12:49:49] 2026-02-12 11:49:49,123 [wrapper] Pilot exit status: 0
[2026-02-12 12:49:49] 2026-02-12 11:49:49,134 [wrapper] pandaids: 7008681526
[2026-02-12 12:49:49] 2026-02-12 11:49:49,154 [wrapper] cleanup supervisor_pilot  630608 620759
[2026-02-12 12:49:49] 2026-02-12 11:49:49,158 [wrapper] Test setup, not cleaning
[2026-02-12 12:49:49] 2026-02-12 11:49:49,162 [wrapper] apfmon messages muted
[2026-02-12 12:49:49] 2026-02-12 11:49:49,165 [wrapper] ==== wrapper stdout END ====
[2026-02-12 12:49:49] 2026-02-12 11:49:49,169 [wrapper] ==== wrapper stderr END ====
[2026-02-12 12:49:49]  *** Error codes and diagnostics ***
[2026-02-12 12:49:49]     "exeErrorCode": 0,
[2026-02-12 12:49:49]     "exeErrorDiag": "",
[2026-02-12 12:49:49]     "pilotErrorCode": 0,
[2026-02-12 12:49:49]     "pilotErrorDiag": "",
[2026-02-12 12:49:49]  *** Listing of results directory ***
[2026-02-12 12:49:49] total 665948
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc    584627 Feb 11 14:18 pilot3.tar.gz
[2026-02-12 12:49:49] -rwx------ 1 boinc boinc     36322 Feb 11 14:20 runpilot2-wrapper.sh
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc      5111 Feb 11 14:21 queuedata.json
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc       100 Feb 12 11:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 12:49:49] -rwxr-xr-x 1 boinc boinc      7986 Feb 12 11:41 run_atlas
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc       105 Feb 12 11:41 job.xml
[2026-02-12 12:49:49] -rw-r--r-- 2 boinc boinc 494393866 Feb 12 11:41 EVNT.48442096._000108.pool.root.1
[2026-02-12 12:49:49] -rw-r--r-- 2 boinc boinc    597954 Feb 12 11:41 input.tar.gz
[2026-02-12 12:49:49] -rw-r--r-- 2 boinc boinc     15845 Feb 12 11:41 start_atlas.sh
[2026-02-12 12:49:49] drwxrwx--x 2 boinc boinc      4096 Feb 12 11:41 shared
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc         0 Feb 12 11:41 boinc_setup_complete
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc      6369 Feb 12 11:41 init_data.xml
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc         0 Feb 12 11:41 boinc_lockfile
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc      2525 Feb 12 11:41 pandaJob.out
[2026-02-12 12:49:49] -rw------- 1 boinc boinc   1000188 Feb 12 11:41 agis_schedconf.cvmfs.json
[2026-02-12 12:49:49] -rw------- 1 boinc boinc   1512955 Feb 12 11:41 agis_ddmendpoints.agis.ALL.json
[2026-02-12 12:49:49] -rw------- 1 boinc boinc       427 Feb 12 11:41 workernode_map.json
[2026-02-12 12:49:49] drwx------ 5 boinc boinc      4096 Feb 12 11:41 pilot3
[2026-02-12 12:49:49] -rw------- 1 boinc boinc 181929355 Feb 12 12:48 HITS.48442098._006176.pool.root.1
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc       530 Feb 12 12:49 boinc_task_state.xml
[2026-02-12 12:49:49] -rw------- 1 boinc boinc      1034 Feb 12 12:49 memory_monitor_summary.json
[2026-02-12 12:49:49] -rw------- 1 boinc boinc    241337 Feb 12 12:49 log.48442098._006176.job.log.tgz.1
[2026-02-12 12:49:49] -rw------- 1 boinc boinc      6305 Feb 12 12:49 heartbeat.json
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc        27 Feb 12 12:49 wrapper_checkpoint.txt
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc      8192 Feb 12 12:49 boinc_mmap_file
[2026-02-12 12:49:49] -rw------- 1 boinc boinc       746 Feb 12 12:49 pilotlog.txt
[2026-02-12 12:49:49] -rw------- 1 boinc boinc        95 Feb 12 12:49 pilot_heartbeat.json
[2026-02-12 12:49:49] -rw------- 1 boinc boinc    605372 Feb 12 12:49 log.48442098._006176.job.log.1
[2026-02-12 12:49:49] -rw------- 1 boinc boinc       357 Feb 12 12:49 output.list
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc       620 Feb 12 12:49 runtime_log
[2026-02-12 12:49:49] -rw------- 1 boinc boinc    860160 Feb 12 12:49 result.tar.gz
[2026-02-12 12:49:49] -rw------- 1 boinc boinc       657 Feb 12 12:49 s0ONDmvJPA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmiIkKDmIKqBYn.diag
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc      8896 Feb 12 12:49 runtime_log.err
[2026-02-12 12:49:49] -rw-r--r-- 1 boinc boinc     12350 Feb 12 12:49 stderr.txt
[2026-02-12 12:49:49] HITS file was successfully produced:
[2026-02-12 12:49:49] -rw------- 1 boinc boinc 181929355 Feb 12 12:48 shared/HITS.pool.root.1
[2026-02-12 12:49:49]  *** Contents of shared directory: ***
[2026-02-12 12:49:49] total 661924
[2026-02-12 12:49:49] -rw-r--r-- 2 boinc boinc 494393866 Feb 12 11:41 ATLAS.root_0
[2026-02-12 12:49:49] -rw-r--r-- 2 boinc boinc    597954 Feb 12 11:41 input.tar.gz
[2026-02-12 12:49:49] -rw-r--r-- 2 boinc boinc     15845 Feb 12 11:41 start_atlas.sh
[2026-02-12 12:49:49] -rw------- 1 boinc boinc 181929355 Feb 12 12:48 HITS.pool.root.1
[2026-02-12 12:49:49] -rw------- 1 boinc boinc    860160 Feb 12 12:49 result.tar.gz
12:49:50 (616659): run_atlas exited; CPU time 15191.419590
12:49:50 (616659): called boinc_finish(0)

</stderr_txt>
]]>

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