Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:42:02 (191894): wrapper (7.7.26015): starting
11:42:02 (191894): wrapper: running run_atlas (--nthreads 12)
[2026-02-12 11:42:02] Arguments: --nthreads 12
[2026-02-12 11:42:02] Threads: 12
[2026-02-12 11:42:02] Checking for CVMFS
[2026-02-12 11:42:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 11:42:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 11:42:02] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 11:42:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 11:42:02] 2.13.3.0 9156 9654 96232 156152 3 52 29961426 46080000 922 130560 0 11403611 99.991 622419 23854 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-02-12 11:42:02] CVMFS is ok
[2026-02-12 11:42:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 11:42:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 11:42:02] Further information can be found at the LHC@home message board.
[2026-02-12 11:42:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 11:42:02] Checking for apptainer binary...
[2026-02-12 11:42:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 11:42:02] Running /usr/bin/apptainer --version
[2026-02-12 11:42:03] apptainer version 1.4.5-2.el9
[2026-02-12 11:42:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 11:42:03] minis01.farm.particle.cz
[2026-02-12 11:42:03] apptainer works
[2026-02-12 11:42:03] Set ATHENA_PROC_NUMBER=12
[2026-02-12 11:42:03] Set ATHENA_CORE_NUMBER=12
[2026-02-12 11:42:03] Starting ATLAS job with PandaID=7011743240
[2026-02-12 11:42:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 12:54:28]  *** The last 200 lines of the pilot log: ***
[2026-02-12 12:54:28]  guid=70d63ca2-723c-4b64-99a3-b40e6fc67866
[2026-02-12 12:54:28]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-12 12:54:28]  is_altstaged=None
[2026-02-12 12:54:28]  is_tar=False
[2026-02-12 12:54:28]  lfn=log.48431096._029271.job.log.tgz.1
[2026-02-12 12:54:28]  mtime=0
[2026-02-12 12:54:28]  protocol_id=None
[2026-02-12 12:54:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-12 12:54:28]  replicas=None
[2026-02-12 12:54:28]  scope=mc23_13p6TeV
[2026-02-12 12:54:28]  status=None
[2026-02-12 12:54:28]  status_code=0
[2026-02-12 12:54:28]  storage_token=
[2026-02-12 12:54:28]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-7011743240/log.48431096._029271.job.log.tgz.1
[2026-02-12 12:54:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/91/a4/log.48431096._029271.job.log.tgz.1
[2026-02-12 12:54:28]  workdir=None
[2026-02-12 12:54:28] ]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,606 | INFO     | transferring file log.48431096._029271.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-7011743240/log.48431096._029271.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-02-12 12:54:28] 2026-02-12 11:53:40,606 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-7011743240/log.48431096._029271.job.log.tgz.1 /var/lib/boinc/slots/0/log.48431096._029271.job
[2026-02-12 12:54:28] 2026-02-12 11:53:40,621 | INFO     | adding to output.list: log.48431096._029271.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/91/a4/log.48431096._029271.job.log.tg
[2026-02-12 12:54:28] 2026-02-12 11:53:40,622 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-12 12:54:28] 2026-02-12 11:53:40,622 | INFO     | summary of transferred files:
[2026-02-12 12:54:28] 2026-02-12 11:53:40,622 | INFO     |  -- lfn=log.48431096._029271.job.log.tgz.1, status_code=0, status=transferred
[2026-02-12 12:54:28] 2026-02-12 11:53:40,622 | INFO     | stage-out finished correctly
[2026-02-12 12:54:28] 2026-02-12 11:53:40,731 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-12 12:54:28] 2026-02-12 11:53:40,799 | INFO     | job 7011743240 has state=finished
[2026-02-12 12:54:28] 2026-02-12 11:53:40,800 | INFO     | preparing for final server update for job 7011743240 in state='finished'
[2026-02-12 12:54:28] 2026-02-12 11:53:40,800 | INFO     | reading metadata from: /var/lib/boinc/slots/0/PanDA_Pilot-7011743240/jobReport.json
[2026-02-12 12:54:28] 2026-02-12 11:53:40,802 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/0/workernode_map.json
[2026-02-12 12:54:28] 2026-02-12 11:53:40,802 | INFO     | this job has now completed (state=finished)
[2026-02-12 12:54:28] 2026-02-12 11:53:40,802 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-12 12:54:28] 2026-02-12 11:53:40,802 | INFO     | log transfer has been attempted: DONE
[2026-02-12 12:54:28] 2026-02-12 11:53:40,802 | INFO     | job 7011743240 has finished - writing final server update
[2026-02-12 12:54:28] 2026-02-12 11:53:40,802 | INFO     | total number of processed events: 400 (read)
[2026-02-12 12:54:28] 2026-02-12 11:53:40,807 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-7011743240/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 12:54:28] 2026-02-12 11:53:40,807 | INFO     | extracted standard info from prmon json
[2026-02-12 12:54:28] 2026-02-12 11:53:40,807 | INFO     | extracted standard memory fields from prmon json
[2026-02-12 12:54:28] 2026-02-12 11:53:40,808 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-12 12:54:28] 2026-02-12 11:53:40,808 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-12 12:54:28] 2026-02-12 11:53:40,808 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-12 12:54:28] 2026-02-12 11:53:40,809 | INFO     | fitting pss+swap vs Time
[2026-02-12 12:54:28] 2026-02-12 11:53:40,809 | INFO     | sum of square deviations: 77515872.0
[2026-02-12 12:54:28] 2026-02-12 11:53:40,809 | INFO     | sum of deviations: -5937457021.000001
[2026-02-12 12:54:28] 2026-02-12 11:53:40,809 | INFO     | mean x: 1770895152.0
[2026-02-12 12:54:28] 2026-02-12 11:53:40,809 | INFO     | mean y: 2876292.984126984
[2026-02-12 12:54:28] 2026-02-12 11:53:40,810 | INFO     | intersect: 135647533089.17245
[2026-02-12 12:54:28] 2026-02-12 11:53:40,810 | INFO     | chi2: 0.03907691560947447
[2026-02-12 12:54:28] 2026-02-12 11:53:40,810 | INFO     | current memory leak: -76.60 B/s (using 63 data points, chi2=0.04)
[2026-02-12 12:54:28] 2026-02-12 11:53:40,810 | INFO     | could have reported an average CPU frequency of 2720 MHz (6 samples)
[2026-02-12 12:54:28] 2026-02-12 11:53:40,810 | INFO     | ..............................
[2026-02-12 12:54:28] 2026-02-12 11:53:40,810 | INFO     | . Timing measurements:
[2026-02-12 12:54:28] 2026-02-12 11:53:40,810 | INFO     | . get job = 0 s
[2026-02-12 12:54:28] 2026-02-12 11:53:40,810 | INFO     | . initial setup = 5 s
[2026-02-12 12:54:28] 2026-02-12 11:53:40,810 | INFO     | . payload setup = 5 s
[2026-02-12 12:54:28] 2026-02-12 11:53:40,810 | INFO     | . stage-in = 0 s
[2026-02-12 12:54:28] 2026-02-12 11:53:40,811 | INFO     | . payload execution = 4264 s
[2026-02-12 12:54:28] 2026-02-12 11:53:40,811 | INFO     | . stage-out = 0 s
[2026-02-12 12:54:28] 2026-02-12 11:53:40,811 | INFO     | . log creation = 0 s
[2026-02-12 12:54:28] 2026-02-12 11:53:40,811 | INFO     | ..............................
[2026-02-12 12:54:28] 2026-02-12 11:53:40,877 | INFO     | 
[2026-02-12 12:54:28] 2026-02-12 11:53:40,877 | INFO     | job summary report
[2026-02-12 12:54:28] 2026-02-12 11:53:40,877 | INFO     | --------------------------------------------------
[2026-02-12 12:54:28] 2026-02-12 11:53:40,877 | INFO     | PanDA job id: 7011743240
[2026-02-12 12:54:28] 2026-02-12 11:53:40,877 | INFO     | task id: 48431096
[2026-02-12 12:54:28] 2026-02-12 11:53:40,877 | INFO     | errors: (none)
[2026-02-12 12:54:28] 2026-02-12 11:53:40,877 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-12 12:54:28] 2026-02-12 11:53:40,877 | INFO     | pilot state: finished 
[2026-02-12 12:54:28] 2026-02-12 11:53:40,877 | INFO     | transexitcode: 0
[2026-02-12 12:54:28] 2026-02-12 11:53:40,877 | INFO     | exeerrorcode: 0
[2026-02-12 12:54:28] 2026-02-12 11:53:40,877 | INFO     | exeerrordiag: 
[2026-02-12 12:54:28] 2026-02-12 11:53:40,878 | INFO     | exitcode: 0
[2026-02-12 12:54:28] 2026-02-12 11:53:40,878 | INFO     | exitmsg: OK
[2026-02-12 12:54:28] 2026-02-12 11:53:40,878 | INFO     | cpuconsumptiontime: 47146 s
[2026-02-12 12:54:28] 2026-02-12 11:53:40,878 | INFO     | nevents: 400
[2026-02-12 12:54:28] 2026-02-12 11:53:40,878 | INFO     | neventsw: 0
[2026-02-12 12:54:28] 2026-02-12 11:53:40,878 | INFO     | pid: 200515
[2026-02-12 12:54:28] 2026-02-12 11:53:40,878 | INFO     | pgrp: 200515
[2026-02-12 12:54:28] 2026-02-12 11:53:40,878 | INFO     | corecount: 12
[2026-02-12 12:54:28] 2026-02-12 11:53:40,878 | INFO     | event service: False
[2026-02-12 12:54:28] 2026-02-12 11:53:40,878 | INFO     | sizes: {0: 2282215, 11: 2282215, 4273: 2308334, 4274: 2317526}
[2026-02-12 12:54:28] 2026-02-12 11:53:40,878 | INFO     | --------------------------------------------------
[2026-02-12 12:54:28] 2026-02-12 11:53:40,878 | INFO     | 
[2026-02-12 12:54:28] 2026-02-12 11:53:40,878 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-02-12 12:54:28] 2026-02-12 11:53:40,896 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,896 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,896 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,896 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,896 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,896 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,896 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,896 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,897 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,897 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,897 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,897 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,897 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,897 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,897 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,897 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,897 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,897 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 12:54:28] 2026-02-12 11:53:40,897 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,897 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 12:54:28] 2026-02-12 11:53:40,897 | INFO     | job 7011743240 has completed (purged errors)
[2026-02-12 12:54:28] 2026-02-12 11:53:40,898 | INFO     | overall cleanup function is called
[2026-02-12 12:54:28] 2026-02-12 11:53:41,906 | INFO     | --- collectZombieJob: --- 10, [200515]
[2026-02-12 12:54:28] 2026-02-12 11:53:41,906 | INFO     | zombie collector waiting for pid 200515
[2026-02-12 12:54:28] 2026-02-12 11:53:41,906 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 12:54:28] 2026-02-12 11:53:41,906 | INFO     | collected zombie processes
[2026-02-12 12:54:28] 2026-02-12 11:53:41,906 | INFO     | will attempt to kill all subprocesses of pid=200515
[2026-02-12 12:54:28] 2026-02-12 11:53:42,042 | INFO     | process IDs to be killed: [200515] (in reverse order)
[2026-02-12 12:54:28] 2026-02-12 11:53:42,092 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 12:54:28] 2026-02-12 11:53:42,093 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 12:54:28] 2026-02-12 11:53:42,098 | INFO     | did not find any defunct processes belonging to 200515
[2026-02-12 12:54:28] 2026-02-12 11:53:42,102 | INFO     | did not find any defunct processes belonging to 200515
[2026-02-12 12:54:28] 2026-02-12 11:53:42,102 | INFO     | ready for new job
[2026-02-12 12:54:28] 2026-02-12 11:53:42,102 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 12:54:28] 2026-02-12 11:53:42,103 | INFO     | **************************************
[2026-02-12 12:54:28] 2026-02-12 11:53:42,104 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 12:54:28] 2026-02-12 11:53:42,104 | INFO     | **************************************
[2026-02-12 12:54:28] 2026-02-12 11:53:42,104 | INFO     | 
[2026-02-12 12:54:28] 2026-02-12 11:53:42,105 | INFO     | architecture information:
[2026-02-12 12:54:28] 2026-02-12 11:53:42,106 | INFO     | executing command: cat /etc/os-release
[2026-02-12 12:54:28] 2026-02-12 11:53:42,120 | INFO     | cat /etc/os-release:
[2026-02-12 12:54:28] NAME="CentOS Linux"
[2026-02-12 12:54:28] VERSION="7 (Core)"
[2026-02-12 12:54:28] ID="centos"
[2026-02-12 12:54:28] ID_LIKE="rhel fedora"
[2026-02-12 12:54:28] VERSION_ID="7"
[2026-02-12 12:54:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 12:54:28] ANSI_COLOR="0;31"
[2026-02-12 12:54:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 12:54:28] HOME_URL="https://www.centos.org/"
[2026-02-12 12:54:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 12:54:28] 
[2026-02-12 12:54:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 12:54:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 12:54:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 12:54:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 12:54:28] 
[2026-02-12 12:54:28] 2026-02-12 11:53:42,120 | INFO     | **************************************
[2026-02-12 12:54:28] 2026-02-12 11:53:42,623 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-02-12 12:54:28] 2026-02-12 11:53:42,637 | INFO     | sufficient remaining disk space (48500834304 B)
[2026-02-12 12:54:28] 2026-02-12 11:53:42,638 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 12:54:28] 2026-02-12 11:53:42,638 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 12:54:28] 2026-02-12 11:53:42,638 | INFO     | update_server=False
[2026-02-12 12:54:28] 2026-02-12 11:53:42,638 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 12:54:28] 2026-02-12 11:53:42,638 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 12:54:28] 2026-02-12 11:53:42,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 12:54:28] 2026-02-12 11:53:42,815 | INFO     | all data control threads have been joined
[2026-02-12 12:54:28] 2026-02-12 11:53:43,202 | INFO     | all job control threads have been joined
[2026-02-12 12:54:28] 2026-02-12 11:53:43,643 | INFO     | [job] retrieve thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:43,644 | INFO     | [job] queue monitor thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:43,695 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 12:54:28] 2026-02-12 11:53:43,792 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:43,821 | INFO     | [data] control thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:44,124 | INFO     | all payload control threads have been joined
[2026-02-12 12:54:28] 2026-02-12 11:53:44,187 | WARNING  | process 200515 can no longer be monitored (due to stat problems) - aborting
[2026-02-12 12:54:28] 2026-02-12 11:53:44,208 | INFO     | [job] control thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:44,218 | INFO     | [payload] validate_post thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:44,296 | INFO     | using path: /var/lib/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 12:54:28] 2026-02-12 11:53:44,300 | INFO     | [job] validate thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:44,349 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:44,430 | INFO     | number of running child processes to parent process 200515: 1
[2026-02-12 12:54:28] 2026-02-12 11:53:44,430 | INFO     | maximum number of monitored processes: 6
[2026-02-12 12:54:28] 2026-02-12 11:53:44,430 | INFO     | aborting job monitoring since job object (job id=7011743240) has expired
[2026-02-12 12:54:28] 2026-02-12 11:53:44,430 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 12:54:28] 2026-02-12 11:53:44,431 | INFO     | will abort loop
[2026-02-12 12:54:28] 2026-02-12 11:53:44,520 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:44,886 | INFO     | [data] copytool_in thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:45,087 | INFO     | [payload] failed_post thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:45,129 | INFO     | [payload] control thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:45,436 | INFO     | [job] job monitor thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:45,701 | INFO     | [data] copytool_out thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:46,644 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:53:52,864 | INFO     | job.realtimelogging is not enabled
[2026-02-12 12:54:28] 2026-02-12 11:53:53,869 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 12:54:28] 2026-02-12 11:54:12,627 | INFO     | PID=195772 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-12 12:54:28] 2026-02-12 11:54:12,627 | INFO     | .. there are 2 such processes running
[2026-02-12 12:54:28] 2026-02-12 11:54:12,628 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 12:54:28] 2026-02-12 11:54:12,628 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 12:54:28] 2026-02-12 11:54:12,628 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 12:54:28] 2026-02-12 11:54:21,663 | INFO     | [monitor] cgroup control has ended
[2026-02-12 12:54:28] 2026-02-12 11:54:23,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139945282598720)>', '<ExcThread(monitor, started 139944932669184)>']
[2026-02-12 12:54:28] 2026-02-12 11:54:23,684 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 12:54:28] 2026-02-12 11:54:23,684 | INFO     | [monitor] control thread has ended
[2026-02-12 12:54:28] 2026-02-12 11:54:28,091 | INFO     | all workflow threads have been joined
[2026-02-12 12:54:28] 2026-02-12 11:54:28,091 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 12:54:28] 2026-02-12 11:54:28,091 | INFO     | traces error code: 0
[2026-02-12 12:54:28] 2026-02-12 11:54:28,092 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 12:54:28] 2026-02-12 11:54:28,188 [wrapper] ==== pilot stdout END ====
[2026-02-12 12:54:28] 2026-02-12 11:54:28,191 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 12:54:28] 2026-02-12 11:54:28,193 [wrapper] pilotpid: 195772
[2026-02-12 12:54:28] 2026-02-12 11:54:28,195 [wrapper] Pilot exit status: 0
[2026-02-12 12:54:28] 2026-02-12 11:54:28,205 [wrapper] pandaids: 7011743240
[2026-02-12 12:54:28] 2026-02-12 11:54:28,240 [wrapper] cleanup supervisor_pilot  248431 195773
[2026-02-12 12:54:28] 2026-02-12 11:54:28,243 [wrapper] Test setup, not cleaning
[2026-02-12 12:54:28] 2026-02-12 11:54:28,246 [wrapper] apfmon messages muted
[2026-02-12 12:54:28] 2026-02-12 11:54:28,249 [wrapper] ==== wrapper stdout END ====
[2026-02-12 12:54:28] 2026-02-12 11:54:28,251 [wrapper] ==== wrapper stderr END ====
[2026-02-12 12:54:28]  *** Error codes and diagnostics ***
[2026-02-12 12:54:28]     "exeErrorCode": 0,
[2026-02-12 12:54:28]     "exeErrorDiag": "",
[2026-02-12 12:54:28]     "pilotErrorCode": 0,
[2026-02-12 12:54:28]     "pilotErrorDiag": "",
[2026-02-12 12:54:28]  *** Listing of results directory ***
[2026-02-12 12:54:28] total 935472
[2026-02-12 12:54:28] -rw-r--r--. 1 boinc boinc    584627 Feb 11 06:32 pilot3.tar.gz
[2026-02-12 12:54:28] -rwx------. 1 boinc boinc     36322 Feb 11 06:36 runpilot2-wrapper.sh
[2026-02-12 12:54:28] -rw-r--r--. 1 boinc boinc      5111 Feb 11 06:39 queuedata.json
[2026-02-12 12:54:28] -rw-r--r--. 1 boinc boinc       100 Feb 12 11:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 12:54:28] -rwxr-xr-x. 1 boinc boinc      7986 Feb 12 11:42 run_atlas
[2026-02-12 12:54:28] -rw-r--r--. 1 boinc boinc       105 Feb 12 11:42 job.xml
[2026-02-12 12:54:28] -rw-r--r--. 1 boinc boinc      6522 Feb 12 11:42 init_data.xml
[2026-02-12 12:54:28] -rw-r--r--. 2 boinc boinc 673973077 Feb 12 11:42 EVNT.48431094._000670.pool.root.1
[2026-02-12 12:54:28] -rw-r--r--. 2 boinc boinc     15845 Feb 12 11:42 start_atlas.sh
[2026-02-12 12:54:28] drwxrwx--x. 2 boinc boinc      4096 Feb 12 11:42 shared
[2026-02-12 12:54:28] -rw-r--r--. 2 boinc boinc    597961 Feb 12 11:42 input.tar.gz
[2026-02-12 12:54:28] -rw-r--r--. 1 boinc boinc         0 Feb 12 11:42 boinc_lockfile
[2026-02-12 12:54:28] -rw-r--r--. 1 boinc boinc      2556 Feb 12 11:42 pandaJob.out
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc   1000188 Feb 12 11:42 agis_schedconf.cvmfs.json
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc   1512955 Feb 12 11:42 agis_ddmendpoints.agis.ALL.json
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc       435 Feb 12 11:42 workernode_map.json
[2026-02-12 12:54:28] drwx------. 5 boinc boinc      4096 Feb 12 11:42 pilot3
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc 277964594 Feb 12 12:53 HITS.48431096._029271.pool.root.1
[2026-02-12 12:54:28] -rw-r--r--. 1 boinc boinc       531 Feb 12 12:53 boinc_task_state.xml
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc      1020 Feb 12 12:53 memory_monitor_summary.json
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc    384842 Feb 12 12:53 log.48431096._029271.job.log.tgz.1
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc      6339 Feb 12 12:53 heartbeat.json
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc        95 Feb 12 12:54 pilot_heartbeat.json
[2026-02-12 12:54:28] -rw-r--r--. 1 boinc boinc      8192 Feb 12 12:54 boinc_mmap_file
[2026-02-12 12:54:28] -rw-r--r--. 1 boinc boinc        27 Feb 12 12:54 wrapper_checkpoint.txt
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc      5409 Feb 12 12:54 pilotlog.txt
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc    639688 Feb 12 12:54 log.48431096._029271.job.log.1
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc       357 Feb 12 12:54 output.list
[2026-02-12 12:54:28] -rw-r--r--. 1 boinc boinc       620 Feb 12 12:54 runtime_log
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc   1044480 Feb 12 12:54 result.tar.gz
[2026-02-12 12:54:28] -rw-r--r--. 1 boinc boinc      8863 Feb 12 12:54 runtime_log.err
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc       662 Feb 12 12:54 kbaNDmq4HA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmdnjKDmwfpuQm.diag
[2026-02-12 12:54:28] -rw-r--r--. 1 boinc boinc     21333 Feb 12 12:54 stderr.txt
[2026-02-12 12:54:28] HITS file was successfully produced:
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc 277964594 Feb 12 12:53 shared/HITS.pool.root.1
[2026-02-12 12:54:28]  *** Contents of shared directory: ***
[2026-02-12 12:54:28] total 931260
[2026-02-12 12:54:28] -rw-r--r--. 2 boinc boinc 673973077 Feb 12 11:42 ATLAS.root_0
[2026-02-12 12:54:28] -rw-r--r--. 2 boinc boinc     15845 Feb 12 11:42 start_atlas.sh
[2026-02-12 12:54:28] -rw-r--r--. 2 boinc boinc    597961 Feb 12 11:42 input.tar.gz
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc 277964594 Feb 12 12:53 HITS.pool.root.1
[2026-02-12 12:54:28] -rw-------. 1 boinc boinc   1044480 Feb 12 12:54 result.tar.gz
12:54:30 (191894): run_atlas exited; CPU time 47215.543651
12:54:30 (191894): called boinc_finish(0)

</stderr_txt>
]]>

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