Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:12:36 (1167866): wrapper (7.7.26015): starting
04:12:36 (1167866): wrapper: running run_atlas (--nthreads 4)
[2026-02-12 04:12:36] Arguments: --nthreads 4
[2026-02-12 04:12:36] Threads: 4
[2026-02-12 04:12:36] Checking for CVMFS
[2026-02-12 04:12:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 04:12:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 04:12:37] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 04:12:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 04:12:37] 2.9.2.0 3057 6652 95224 156137 1 49 22899221 36864001 0 130560 0 3273070 99.987 212014 4691 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-12 04:12:37] CVMFS is ok
[2026-02-12 04:12:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 04:12:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 04:12:37] Further information can be found at the LHC@home message board.
[2026-02-12 04:12:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 04:12:37] Checking for apptainer binary...
[2026-02-12 04:12:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 04:12:37] Running /usr/bin/apptainer --version
[2026-02-12 04:12:37] apptainer version 1.4.1-1.1
[2026-02-12 04:12:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 04:12:37] thA381
[2026-02-12 04:12:37] apptainer works
[2026-02-12 04:12:37] Set ATHENA_PROC_NUMBER=4
[2026-02-12 04:12:37] Set ATHENA_CORE_NUMBER=4
[2026-02-12 04:12:37] Starting ATLAS job with PandaID=7011767816
[2026-02-12 04:12:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 04:19:55]  *** The last 200 lines of the pilot log: ***
[2026-02-12 04:19:55] 2026-02-12 03:19:10,975 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 04:19:55] 2026-02-12 03:19:10,976 | INFO     | will abort loop
[2026-02-12 04:19:55] 2026-02-12 03:19:11,005 | INFO     | all job control threads have been joined
[2026-02-12 04:19:55] 2026-02-12 03:19:11,220 | INFO     | all payload control threads have been joined
[2026-02-12 04:19:55] 2026-02-12 03:19:11,220 | INFO     | all data control threads have been joined
[2026-02-12 04:19:55] 2026-02-12 03:19:11,768 | INFO     | [job] queue monitor thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:11,769 | INFO     | [job] retrieve thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:11,797 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:11,919 | INFO     | [data] copytool_in thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:11,982 | INFO     | [job] job monitor thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:12,011 | INFO     | [job] control thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:12,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 04:19:55] 2026-02-12 03:19:12,226 | INFO     | [data] control thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:12,226 | INFO     | [payload] control thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:12,378 | INFO     | [payload] validate_post thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:12,769 | INFO     | [data] copytool_out thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:13,090 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:13,120 | INFO     | [job] validate thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:13,217 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:13,254 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:13,282 | INFO     | [payload] failed_post thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:16,082 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 04:19:55] 2026-02-12 03:19:40,677 | INFO     | PID=1171981 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-12 04:19:55] 2026-02-12 03:19:40,677 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 04:19:55] 2026-02-12 03:19:40,677 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 04:19:55] 2026-02-12 03:19:40,677 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 04:19:55] 2026-02-12 03:19:50,158 | INFO     | [monitor] cgroup control has ended
[2026-02-12 04:19:55] 2026-02-12 03:19:50,621 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140296830363456)>', '<ExcThread(monitor, started 140295366764288)>']
[2026-02-12 04:19:55] 2026-02-12 03:19:50,731 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 04:19:55] 2026-02-12 03:19:50,731 | INFO     | [monitor] control thread has ended
[2026-02-12 04:19:55] 2026-02-12 03:19:55,647 | INFO     | all workflow threads have been joined
[2026-02-12 04:19:55] 2026-02-12 03:19:55,647 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 04:19:55] 2026-02-12 03:19:55,647 | INFO     | traces error code: 0
[2026-02-12 04:19:55] 2026-02-12 03:19:55,647 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 04:19:55] 2026-02-12 03:19:55,729 [wrapper] ==== pilot stdout END ====
[2026-02-12 04:19:55] 2026-02-12 03:19:55,733 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 04:19:55] 2026-02-12 03:19:55,737 [wrapper] pilotpid: 1171981
[2026-02-12 04:19:55] 2026-02-12 03:19:55,741 [wrapper] Pilot exit status: 0
[2026-02-12 04:19:55] 2026-02-12 03:19:55,752 [wrapper] pandaids: 7011767816
[2026-02-12 04:19:55] 2026-02-12 03:19:55,774 [wrapper] cleanup supervisor_pilot 1171987 1171982
[2026-02-12 04:19:55] 2026-02-12 03:19:55,778 [wrapper] Test setup, not cleaning
[2026-02-12 04:19:55] 2026-02-12 03:19:55,781 [wrapper] apfmon messages muted
[2026-02-12 04:19:55] 2026-02-12 03:19:55,785 [wrapper] ==== wrapper stdout END ====
[2026-02-12 04:19:55] 2026-02-12 03:19:55,789 [wrapper] ==== wrapper stderr END ====
[2026-02-12 04:19:55]  *** Error codes and diagnostics ***
[2026-02-12 04:19:55]     "exeErrorCode": 0,
[2026-02-12 04:19:55]     "exeErrorDiag": "",
[2026-02-12 04:19:55]     "pilotErrorCode": 1305,
[2026-02-12 04:19:55]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 5932.64 KB/s",
[2026-02-12 04:19:55]  *** Listing of results directory ***
[2026-02-12 04:19:55] total 666180
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc    584627 Feb 11 08:46 pilot3.tar.gz
[2026-02-12 04:19:55] -rwx------ 1 boinc boinc     36322 Feb 11 08:47 runpilot2-wrapper.sh
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc      5111 Feb 11 08:48 queuedata.json
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc       100 Feb 12 04:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 04:19:55] -rwxr-xr-x 1 boinc boinc      7986 Feb 12 04:12 run_atlas
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc       105 Feb 12 04:12 job.xml
[2026-02-12 04:19:55] -rw-r--r-- 2 boinc boinc 677799080 Feb 12 04:12 EVNT.48431094._000717.pool.root.1
[2026-02-12 04:19:55] -rw-r--r-- 2 boinc boinc    597956 Feb 12 04:12 input.tar.gz
[2026-02-12 04:19:55] -rw-r--r-- 2 boinc boinc     15845 Feb 12 04:12 start_atlas.sh
[2026-02-12 04:19:55] drwxrwx--x 2 boinc boinc      4096 Feb 12 04:12 shared
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc         0 Feb 12 04:12 boinc_setup_complete
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc      6376 Feb 12 04:12 init_data.xml
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc         0 Feb 12 04:12 boinc_lockfile
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc      2556 Feb 12 04:12 pandaJob.out
[2026-02-12 04:19:55] -rw------- 1 boinc boinc   1005065 Feb 12 04:12 agis_schedconf.cvmfs.json
[2026-02-12 04:19:55] -rw------- 1 boinc boinc   1512955 Feb 12 04:12 agis_ddmendpoints.agis.ALL.json
[2026-02-12 04:19:55] -rw------- 1 boinc boinc       427 Feb 12 04:12 workernode_map.json
[2026-02-12 04:19:55] drwx------ 5 boinc boinc      4096 Feb 12 04:12 pilot3
[2026-02-12 04:19:55] -rw------- 1 boinc boinc       998 Feb 12 04:17 memory_monitor_summary.json
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc       526 Feb 12 04:17 boinc_task_state.xml
[2026-02-12 04:19:55] -rw------- 1 boinc boinc    117808 Feb 12 04:17 log.48431096._030365.job.log.tgz.1
[2026-02-12 04:19:55] -rw------- 1 boinc boinc        95 Feb 12 04:18 pilot_heartbeat.json
[2026-02-12 04:19:55] -rw------- 1 boinc boinc      7199 Feb 12 04:19 heartbeat.json
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc      8192 Feb 12 04:19 boinc_mmap_file
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc        23 Feb 12 04:19 wrapper_checkpoint.txt
[2026-02-12 04:19:55] -rw------- 1 boinc boinc      4934 Feb 12 04:19 pilotlog.txt
[2026-02-12 04:19:55] -rw------- 1 boinc boinc    110171 Feb 12 04:19 log.48431096._030365.job.log.1
[2026-02-12 04:19:55] -rw------- 1 boinc boinc       188 Feb 12 04:19 output.list
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc       620 Feb 12 04:19 runtime_log
[2026-02-12 04:19:55] -rw------- 1 boinc boinc    245760 Feb 12 04:19 result.tar.gz
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc      8743 Feb 12 04:19 runtime_log.err
[2026-02-12 04:19:55] -rw------- 1 boinc boinc       649 Feb 12 04:19 9uSKDmR7JA9n9Rq4apOajLDm4fhM0noT9bVooX4SDmf4iKDmdpj4Do.diag
[2026-02-12 04:19:55] -rw-r--r-- 1 boinc boinc      7161 Feb 12 04:19 stderr.txt
[2026-02-12 04:19:55] No HITS result produced
[2026-02-12 04:19:55]  *** Contents of shared directory: ***
[2026-02-12 04:19:55] total 662760
[2026-02-12 04:19:55] -rw-r--r-- 2 boinc boinc 677799080 Feb 12 04:12 ATLAS.root_0
[2026-02-12 04:19:55] -rw-r--r-- 2 boinc boinc    597956 Feb 12 04:12 input.tar.gz
[2026-02-12 04:19:55] -rw-r--r-- 2 boinc boinc     15845 Feb 12 04:12 start_atlas.sh
[2026-02-12 04:19:55] -rw------- 1 boinc boinc    245760 Feb 12 04:19 result.tar.gz
04:19:57 (1167866): run_atlas exited; CPU time 97.343067
04:19:57 (1167866): called boinc_finish(0)

</stderr_txt>
]]>

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