Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:37:43 (1866092): wrapper (7.7.26015): starting
04:37:43 (1866092): wrapper: running run_atlas (--nthreads 3)
[2026-02-12 04:37:43] Arguments: --nthreads 3
[2026-02-12 04:37:43] Threads: 3
[2026-02-12 04:37:43] Checking for CVMFS
[2026-02-12 04:37:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 04:37:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 04:37:43] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 04:37:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 04:37:43] 2.9.2.0 578680 8523 84984 156138 0 50 20149819 36864001 0 130560 0 3419050 99.984 281843 6289 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-12 04:37:43] CVMFS is ok
[2026-02-12 04:37:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 04:37:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 04:37:43] Further information can be found at the LHC@home message board.
[2026-02-12 04:37:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 04:37:43] Checking for apptainer binary...
[2026-02-12 04:37:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 04:37:43] Running /usr/bin/apptainer --version
[2026-02-12 04:37:43] apptainer version 1.4.1-1.1
[2026-02-12 04:37:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 04:37:43] thA305
[2026-02-12 04:37:43] apptainer works
[2026-02-12 04:37:43] Set ATHENA_PROC_NUMBER=3
[2026-02-12 04:37:43] Set ATHENA_CORE_NUMBER=3
[2026-02-12 04:37:43] Starting ATLAS job with PandaID=7011767690
[2026-02-12 04:37:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 06:44:09]  *** The last 200 lines of the pilot log: ***
[2026-02-12 06:44:09] 2026-02-12 05:43:17,741 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 06:44:09] 2026-02-12 05:43:17,741 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 06:44:09] 2026-02-12 05:43:17,742 | INFO     | job 7011767690 has completed (purged errors)
[2026-02-12 06:44:09] 2026-02-12 05:43:17,742 | INFO     | overall cleanup function is called
[2026-02-12 06:44:09] 2026-02-12 05:43:18,748 | INFO     | --- collectZombieJob: --- 10, [1874555]
[2026-02-12 06:44:09] 2026-02-12 05:43:18,748 | INFO     | zombie collector waiting for pid 1874555
[2026-02-12 06:44:09] 2026-02-12 05:43:18,748 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 06:44:09] 2026-02-12 05:43:18,748 | INFO     | collected zombie processes
[2026-02-12 06:44:09] 2026-02-12 05:43:18,749 | INFO     | will attempt to kill all subprocesses of pid=1874555
[2026-02-12 06:44:09] 2026-02-12 05:43:18,798 | INFO     | process IDs to be killed: [1874555] (in reverse order)
[2026-02-12 06:44:09] 2026-02-12 05:43:18,824 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 06:44:09] 2026-02-12 05:43:18,824 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 06:44:09] 2026-02-12 05:43:18,826 | INFO     | did not find any defunct processes belonging to 1874555
[2026-02-12 06:44:09] 2026-02-12 05:43:18,827 | INFO     | did not find any defunct processes belonging to 1874555
[2026-02-12 06:44:09] 2026-02-12 05:43:18,827 | INFO     | ready for new job
[2026-02-12 06:44:09] 2026-02-12 05:43:18,827 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 06:44:09] 2026-02-12 05:43:18,828 | INFO     | **************************************
[2026-02-12 06:44:09] 2026-02-12 05:43:18,828 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 06:44:09] 2026-02-12 05:43:18,828 | INFO     | **************************************
[2026-02-12 06:44:09] 2026-02-12 05:43:18,828 | INFO     | 
[2026-02-12 06:44:09] 2026-02-12 05:43:18,828 | INFO     | architecture information:
[2026-02-12 06:44:09] 2026-02-12 05:43:18,828 | INFO     | executing command: cat /etc/os-release
[2026-02-12 06:44:09] 2026-02-12 05:43:18,837 | INFO     | cat /etc/os-release:
[2026-02-12 06:44:09] NAME="CentOS Linux"
[2026-02-12 06:44:09] VERSION="7 (Core)"
[2026-02-12 06:44:09] ID="centos"
[2026-02-12 06:44:09] ID_LIKE="rhel fedora"
[2026-02-12 06:44:09] VERSION_ID="7"
[2026-02-12 06:44:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 06:44:09] ANSI_COLOR="0;31"
[2026-02-12 06:44:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 06:44:09] HOME_URL="https://www.centos.org/"
[2026-02-12 06:44:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 06:44:09] 
[2026-02-12 06:44:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 06:44:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 06:44:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 06:44:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 06:44:09] 
[2026-02-12 06:44:09] 2026-02-12 05:43:18,837 | INFO     | **************************************
[2026-02-12 06:44:09] 2026-02-12 05:43:19,340 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-12 06:44:09] 2026-02-12 05:43:19,353 | INFO     | sufficient remaining disk space (235659067392 B)
[2026-02-12 06:44:09] 2026-02-12 05:43:19,353 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 06:44:09] 2026-02-12 05:43:19,353 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 06:44:09] 2026-02-12 05:43:19,353 | INFO     | update_server=False
[2026-02-12 06:44:09] 2026-02-12 05:43:19,353 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 06:44:09] 2026-02-12 05:43:19,354 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 06:44:09] 2026-02-12 05:43:19,354 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 06:44:09] 2026-02-12 05:43:19,354 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 06:44:09] 2026-02-12 05:43:19,354 | INFO     | aborting loop
[2026-02-12 06:44:09] 2026-02-12 05:43:19,421 | INFO     | all data control threads have been joined
[2026-02-12 06:44:09] 2026-02-12 05:43:19,484 | INFO     | job.realtimelogging is not enabled
[2026-02-12 06:44:09] 2026-02-12 05:43:19,899 | INFO     | all job control threads have been joined
[2026-02-12 06:44:09] 2026-02-12 05:43:19,954 | INFO     | all payload control threads have been joined
[2026-02-12 06:44:09] 2026-02-12 05:43:20,359 | INFO     | [job] retrieve thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:20,359 | INFO     | [job] queue monitor thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:20,359 | INFO     | [job] job monitor thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:20,370 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:20,427 | INFO     | [data] control thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:20,490 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:20,800 | INFO     | [payload] validate_post thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:20,837 | INFO     | [payload] failed_post thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:20,905 | INFO     | [job] control thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:20,960 | INFO     | [payload] control thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:21,360 | INFO     | [data] copytool_out thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:21,412 | INFO     | [job] validate thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:21,419 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:21,480 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:21,596 | INFO     | [data] copytool_in thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:21,738 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 06:44:09] 2026-02-12 05:43:25,740 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 06:44:09] 2026-02-12 05:43:50,089 | INFO     | PID=1870135 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-12 06:44:09] 2026-02-12 05:43:50,089 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 06:44:09] 2026-02-12 05:43:50,089 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 06:44:09] 2026-02-12 05:43:50,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 06:44:09] 2026-02-12 05:44:02,995 | INFO     | [monitor] cgroup control has ended
[2026-02-12 06:44:09] 2026-02-12 05:44:04,403 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140374545471296)>', '<ExcThread(monitor, started 140374202894080)>']
[2026-02-12 06:44:09] 2026-02-12 05:44:05,164 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 06:44:09] 2026-02-12 05:44:05,165 | INFO     | [monitor] control thread has ended
[2026-02-12 06:44:09] 2026-02-12 05:44:09,429 | INFO     | all workflow threads have been joined
[2026-02-12 06:44:09] 2026-02-12 05:44:09,429 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 06:44:09] 2026-02-12 05:44:09,429 | INFO     | traces error code: 0
[2026-02-12 06:44:09] 2026-02-12 05:44:09,429 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 06:44:09] 2026-02-12 05:44:09,479 [wrapper] ==== pilot stdout END ====
[2026-02-12 06:44:09] 2026-02-12 05:44:09,481 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 06:44:09] 2026-02-12 05:44:09,484 [wrapper] pilotpid: 1870135
[2026-02-12 06:44:09] 2026-02-12 05:44:09,486 [wrapper] Pilot exit status: 0
[2026-02-12 06:44:09] 2026-02-12 05:44:09,493 [wrapper] pandaids: 7011767690
[2026-02-12 06:44:09] 2026-02-12 05:44:09,510 [wrapper] cleanup supervisor_pilot 1881554 1870136
[2026-02-12 06:44:09] 2026-02-12 05:44:09,512 [wrapper] Test setup, not cleaning
[2026-02-12 06:44:09] 2026-02-12 05:44:09,514 [wrapper] apfmon messages muted
[2026-02-12 06:44:09] 2026-02-12 05:44:09,516 [wrapper] ==== wrapper stdout END ====
[2026-02-12 06:44:09] 2026-02-12 05:44:09,519 [wrapper] ==== wrapper stderr END ====
[2026-02-12 06:44:09]  *** Error codes and diagnostics ***
[2026-02-12 06:44:09]     "exeErrorCode": 0,
[2026-02-12 06:44:09]     "exeErrorDiag": "",
[2026-02-12 06:44:09]     "pilotErrorCode": 0,
[2026-02-12 06:44:09]     "pilotErrorDiag": "",
[2026-02-12 06:44:09]  *** Listing of results directory ***
[2026-02-12 06:44:09] total 945324
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc    584627 Feb 11 08:46 pilot3.tar.gz
[2026-02-12 06:44:09] -rwx------ 1 boinc boinc     36322 Feb 11 08:47 runpilot2-wrapper.sh
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc      5111 Feb 11 08:48 queuedata.json
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc       100 Feb 12 04:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 06:44:09] -rwxr-xr-x 1 boinc boinc      7986 Feb 12 04:37 run_atlas
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc       105 Feb 12 04:37 job.xml
[2026-02-12 06:44:09] -rw-r--r-- 2 boinc boinc 679577952 Feb 12 04:37 EVNT.48431094._000714.pool.root.1
[2026-02-12 06:44:09] -rw-r--r-- 2 boinc boinc    597960 Feb 12 04:37 input.tar.gz
[2026-02-12 06:44:09] -rw-r--r-- 2 boinc boinc     15845 Feb 12 04:37 start_atlas.sh
[2026-02-12 06:44:09] drwxrwx--x 2 boinc boinc      4096 Feb 12 04:37 shared
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc         0 Feb 12 04:37 boinc_setup_complete
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc      6439 Feb 12 04:37 init_data.xml
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc         0 Feb 12 04:37 boinc_lockfile
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc      2557 Feb 12 04:37 pandaJob.out
[2026-02-12 06:44:09] -rw------- 1 boinc boinc   1005065 Feb 12 04:37 agis_schedconf.cvmfs.json
[2026-02-12 06:44:09] -rw------- 1 boinc boinc   1512955 Feb 12 04:37 agis_ddmendpoints.agis.ALL.json
[2026-02-12 06:44:09] -rw------- 1 boinc boinc       427 Feb 12 04:37 workernode_map.json
[2026-02-12 06:44:09] drwx------ 5 boinc boinc      4096 Feb 12 04:37 pilot3
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc       530 Feb 12 06:42 boinc_task_state.xml
[2026-02-12 06:44:09] -rw------- 1 boinc boinc 281718778 Feb 12 06:42 HITS.48431096._030240.pool.root.1
[2026-02-12 06:44:09] -rw------- 1 boinc boinc      1022 Feb 12 06:43 memory_monitor_summary.json
[2026-02-12 06:44:09] -rw------- 1 boinc boinc    316649 Feb 12 06:43 log.48431096._030240.job.log.tgz.1
[2026-02-12 06:44:09] -rw------- 1 boinc boinc      6320 Feb 12 06:43 heartbeat.json
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc      8192 Feb 12 06:43 boinc_mmap_file
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc        27 Feb 12 06:43 wrapper_checkpoint.txt
[2026-02-12 06:44:09] -rw------- 1 boinc boinc        95 Feb 12 06:43 pilot_heartbeat.json
[2026-02-12 06:44:09] -rw------- 1 boinc boinc      4820 Feb 12 06:44 pilotlog.txt
[2026-02-12 06:44:09] -rw------- 1 boinc boinc   1081029 Feb 12 06:44 log.48431096._030240.job.log.1
[2026-02-12 06:44:09] -rw------- 1 boinc boinc       357 Feb 12 06:44 output.list
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc       620 Feb 12 06:44 runtime_log
[2026-02-12 06:44:09] -rw------- 1 boinc boinc   1413120 Feb 12 06:44 result.tar.gz
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc      8896 Feb 12 06:44 runtime_log.err
[2026-02-12 06:44:09] -rw------- 1 boinc boinc       657 Feb 12 06:44 0VxLDmR7JA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmbtjKDmpCaqEo.diag
[2026-02-12 06:44:09] -rw-r--r-- 1 boinc boinc     11105 Feb 12 06:44 stderr.txt
[2026-02-12 06:44:09] HITS file was successfully produced:
[2026-02-12 06:44:09] -rw------- 1 boinc boinc 281718778 Feb 12 06:42 shared/HITS.pool.root.1
[2026-02-12 06:44:09]  *** Contents of shared directory: ***
[2026-02-12 06:44:09] total 940756
[2026-02-12 06:44:09] -rw-r--r-- 2 boinc boinc 679577952 Feb 12 04:37 ATLAS.root_0
[2026-02-12 06:44:09] -rw-r--r-- 2 boinc boinc    597960 Feb 12 04:37 input.tar.gz
[2026-02-12 06:44:09] -rw-r--r-- 2 boinc boinc     15845 Feb 12 04:37 start_atlas.sh
[2026-02-12 06:44:09] -rw------- 1 boinc boinc 281718778 Feb 12 06:42 HITS.pool.root.1
[2026-02-12 06:44:09] -rw------- 1 boinc boinc   1413120 Feb 12 06:44 result.tar.gz
06:44:11 (1866092): run_atlas exited; CPU time 21834.883066
06:44:11 (1866092): called boinc_finish(0)

</stderr_txt>
]]>

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