Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:29:32 (26820): wrapper (7.7.26015): starting
23:29:32 (26820): wrapper: running run_atlas (--nthreads 8)
[2026-02-11 23:29:32] Arguments: --nthreads 8
[2026-02-11 23:29:32] Threads: 8
[2026-02-11 23:29:32] Checking for CVMFS
[2026-02-11 23:29:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-11 23:29:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-11 23:29:33] Running cvmfs_config stat atlas.cern.ch
[2026-02-11 23:29:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-11 23:29:35] 2.11.2.0 10611 83514 135928 156131 3 53 20341504 25165824 899 130560 0 25463981 99.823 17564434 2822 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-11 23:29:35] CVMFS is ok
[2026-02-11 23:29:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-11 23:29:35] Checking for apptainer binary...
[2026-02-11 23:29:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-11 23:29:35] Running /usr/bin/apptainer --version
[2026-02-11 23:29:35] apptainer version 1.3.2-1.el7
[2026-02-11 23:29:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-11 23:29:58] cg-vwn418.simple-grid.lan
[2026-02-11 23:29:58] apptainer works
[2026-02-11 23:29:58] Set ATHENA_PROC_NUMBER=8
[2026-02-11 23:29:58] Set ATHENA_CORE_NUMBER=8
[2026-02-11 23:29:58] Starting ATLAS job with PandaID=7011743122
[2026-02-11 23:29:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 05:52:27]  *** The last 200 lines of the pilot log: ***
[2026-02-12 05:52:27] 2026-02-12 04:51:12,456 | INFO     | total number of processed events: 400 (read)
[2026-02-12 05:52:27] 2026-02-12 04:51:12,458 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7011743122/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 05:52:27] 2026-02-12 04:51:12,459 | INFO     | extracted standard info from prmon json
[2026-02-12 05:52:27] 2026-02-12 04:51:12,459 | INFO     | extracted standard memory fields from prmon json
[2026-02-12 05:52:27] 2026-02-12 04:51:12,459 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-12 05:52:27] 2026-02-12 04:51:12,459 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-12 05:52:27] 2026-02-12 04:51:12,460 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-12 05:52:27] 2026-02-12 04:51:12,467 | INFO     | fitting pss+swap vs Time
[2026-02-12 05:52:27] 2026-02-12 04:51:12,468 | INFO     | sum of square deviations: 14954754815.0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,477 | INFO     | sum of deviations: 239337208464.5
[2026-02-12 05:52:27] 2026-02-12 04:51:12,477 | INFO     | mean x: 1770860755.5
[2026-02-12 05:52:27] 2026-02-12 04:51:12,477 | INFO     | mean y: 2493200.436813187
[2026-02-12 05:52:27] 2026-02-12 04:51:12,477 | INFO     | intersect: -28338517738.4781
[2026-02-12 05:52:27] 2026-02-12 04:51:12,478 | INFO     | chi2: 8.648187835652646
[2026-02-12 05:52:27] 2026-02-12 04:51:12,478 | INFO     | sum of square deviations: 14346910860.0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,482 | INFO     | sum of deviations: 260099371075.99994
[2026-02-12 05:52:27] 2026-02-12 04:51:12,483 | INFO     | mean x: 1770860603.0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,483 | INFO     | mean y: 2498340.6100278553
[2026-02-12 05:52:27] 2026-02-12 04:51:12,483 | INFO     | intersect: -32101954917.529613
[2026-02-12 05:52:27] 2026-02-12 04:51:12,484 | INFO     | chi2: 7.9261846402331555
[2026-02-12 05:52:27] 2026-02-12 04:51:12,484 | INFO     | current chi2=7.9261846402331555 (change=8.348606773351882 %)
[2026-02-12 05:52:27] 2026-02-12 04:51:12,484 | INFO     | right removable region: 358
[2026-02-12 05:52:27] 2026-02-12 04:51:12,485 | INFO     | sum of square deviations: 14346910860.0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,489 | INFO     | sum of deviations: 108863037316.0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,489 | INFO     | mean x: 1770860908.0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,489 | INFO     | mean y: 2525921.011142061
[2026-02-12 05:52:27] 2026-02-12 04:51:12,489 | INFO     | intersect: -13434603436.677614
[2026-02-12 05:52:27] 2026-02-12 04:51:12,490 | INFO     | chi2: 3.754240528043068
[2026-02-12 05:52:27] 2026-02-12 04:51:12,490 | INFO     | current chi2=3.754240528043068 (change=56.589280906157036 %)
[2026-02-12 05:52:27] 2026-02-12 04:51:12,491 | INFO     | sum of square deviations: 13755764892.5
[2026-02-12 05:52:27] 2026-02-12 04:51:12,495 | INFO     | sum of deviations: 8606539379.500008
[2026-02-12 05:52:27] 2026-02-12 04:51:12,495 | INFO     | mean x: 1770861060.5
[2026-02-12 05:52:27] 2026-02-12 04:51:12,495 | INFO     | mean y: 2551765.121468927
[2026-02-12 05:52:27] 2026-02-12 04:51:12,495 | INFO     | intersect: -1105419007.272742
[2026-02-12 05:52:27] 2026-02-12 04:51:12,496 | INFO     | chi2: 1.033578989717337
[2026-02-12 05:52:27] 2026-02-12 04:51:12,496 | INFO     | current chi2=1.033578989717337 (change=72.46902583899974 %)
[2026-02-12 05:52:27] 2026-02-12 04:51:12,497 | INFO     | sum of square deviations: 13181084350.0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,504 | INFO     | sum of deviations: -13419593739.999998
[2026-02-12 05:52:27] 2026-02-12 04:51:12,509 | INFO     | mean x: 1770861213.0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,509 | INFO     | mean y: 2557579.318051576
[2026-02-12 05:52:27] 2026-02-12 04:51:12,510 | INFO     | intersect: 1805462212.7584412
[2026-02-12 05:52:27] 2026-02-12 04:51:12,510 | INFO     | chi2: 0.8457850228239473
[2026-02-12 05:52:27] 2026-02-12 04:51:12,510 | INFO     | current chi2=0.8457850228239473 (change=18.169290277925214 %)
[2026-02-12 05:52:27] 2026-02-12 04:51:12,510 | INFO     | left removable region: 30
[2026-02-12 05:52:27] 2026-02-12 04:51:12,511 | INFO     | sum of square deviations: 10941980042.0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,515 | INFO     | sum of deviations: 20413507992.0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,515 | INFO     | mean x: 1770861487.5
[2026-02-12 05:52:27] 2026-02-12 04:51:12,515 | INFO     | mean y: 2560844.426829268
[2026-02-12 05:52:27] 2026-02-12 04:51:12,515 | INFO     | intersect: -3301182626.960345
[2026-02-12 05:52:27] 2026-02-12 04:51:12,516 | INFO     | chi2: 0.002692124546266683
[2026-02-12 05:52:27] 2026-02-12 04:51:12,516 | INFO     | current memory leak: 1.87 B/s (using 328 data points, chi2=0.00)
[2026-02-12 05:52:27] 2026-02-12 04:51:12,517 | INFO     | could have reported an average CPU frequency of 1999 MHz (16 samples)
[2026-02-12 05:52:27] 2026-02-12 04:51:12,517 | INFO     | ..............................
[2026-02-12 05:52:27] 2026-02-12 04:51:12,517 | INFO     | . Timing measurements:
[2026-02-12 05:52:27] 2026-02-12 04:51:12,517 | INFO     | . get job = 0 s
[2026-02-12 05:52:27] 2026-02-12 04:51:12,517 | INFO     | . initial setup = 114 s
[2026-02-12 05:52:27] 2026-02-12 04:51:12,517 | INFO     | . payload setup = 154 s
[2026-02-12 05:52:27] 2026-02-12 04:51:12,517 | INFO     | . stage-in = 0 s
[2026-02-12 05:52:27] 2026-02-12 04:51:12,517 | INFO     | . payload execution = 22295 s
[2026-02-12 05:52:27] 2026-02-12 04:51:12,518 | INFO     | . stage-out = 4 s
[2026-02-12 05:52:27] 2026-02-12 04:51:12,518 | INFO     | . log creation = 1 s
[2026-02-12 05:52:27] 2026-02-12 04:51:12,518 | INFO     | ..............................
[2026-02-12 05:52:27] 2026-02-12 04:51:12,904 | INFO     | 
[2026-02-12 05:52:27] 2026-02-12 04:51:12,904 | INFO     | job summary report
[2026-02-12 05:52:27] 2026-02-12 04:51:12,905 | INFO     | --------------------------------------------------
[2026-02-12 05:52:27] 2026-02-12 04:51:12,905 | INFO     | PanDA job id: 7011743122
[2026-02-12 05:52:27] 2026-02-12 04:51:12,905 | INFO     | task id: 48431096
[2026-02-12 05:52:27] 2026-02-12 04:51:12,905 | INFO     | errors: (none)
[2026-02-12 05:52:27] 2026-02-12 04:51:12,905 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-12 05:52:27] 2026-02-12 04:51:12,905 | INFO     | pilot state: finished 
[2026-02-12 05:52:27] 2026-02-12 04:51:12,905 | INFO     | transexitcode: 0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,905 | INFO     | exeerrorcode: 0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,906 | INFO     | exeerrordiag: 
[2026-02-12 05:52:27] 2026-02-12 04:51:12,906 | INFO     | exitcode: 0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,906 | INFO     | exitmsg: OK
[2026-02-12 05:52:27] 2026-02-12 04:51:12,906 | INFO     | cpuconsumptiontime: 85212 s
[2026-02-12 05:52:27] 2026-02-12 04:51:12,906 | INFO     | nevents: 400
[2026-02-12 05:52:27] 2026-02-12 04:51:12,906 | INFO     | neventsw: 0
[2026-02-12 05:52:27] 2026-02-12 04:51:12,906 | INFO     | pid: 2849
[2026-02-12 05:52:27] 2026-02-12 04:51:12,906 | INFO     | pgrp: 2849
[2026-02-12 05:52:27] 2026-02-12 04:51:12,907 | INFO     | corecount: 8
[2026-02-12 05:52:27] 2026-02-12 04:51:12,907 | INFO     | event service: False
[2026-02-12 05:52:27] 2026-02-12 04:51:12,907 | INFO     | sizes: {0: 2281784, 1: 2282245, 12: 2282245, 22454: 2316707, 22455: 2316706, 22459: 2325760, 22463: 2325972, 22464: 2326166}
[2026-02-12 05:52:27] 2026-02-12 04:51:12,907 | INFO     | --------------------------------------------------
[2026-02-12 05:52:27] 2026-02-12 04:51:12,907 | INFO     | 
[2026-02-12 05:52:27] 2026-02-12 04:51:12,907 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-02-12 05:52:27] 2026-02-12 04:51:13,429 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,429 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,429 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,429 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,430 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,430 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,430 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,430 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,430 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,430 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,430 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,430 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,431 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,431 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,431 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,431 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,431 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,431 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 05:52:27] 2026-02-12 04:51:13,431 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,431 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 05:52:27] 2026-02-12 04:51:13,432 | INFO     | job 7011743122 has completed (purged errors)
[2026-02-12 05:52:27] 2026-02-12 04:51:13,432 | INFO     | overall cleanup function is called
[2026-02-12 05:52:27] 2026-02-12 04:51:14,441 | INFO     | --- collectZombieJob: --- 10, [2849]
[2026-02-12 05:52:27] 2026-02-12 04:51:14,441 | INFO     | zombie collector waiting for pid 2849
[2026-02-12 05:52:27] 2026-02-12 04:51:14,442 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 05:52:27] 2026-02-12 04:51:14,442 | INFO     | collected zombie processes
[2026-02-12 05:52:27] 2026-02-12 04:51:14,442 | INFO     | will attempt to kill all subprocesses of pid=2849
[2026-02-12 05:52:27] 2026-02-12 04:51:14,509 | INFO     | process IDs to be killed: [2849] (in reverse order)
[2026-02-12 05:52:27] 2026-02-12 04:51:15,540 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 05:52:27] 2026-02-12 04:51:15,540 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 05:52:27] 2026-02-12 04:51:15,543 | INFO     | did not find any defunct processes belonging to 2849
[2026-02-12 05:52:27] 2026-02-12 04:51:15,545 | INFO     | did not find any defunct processes belonging to 2849
[2026-02-12 05:52:27] 2026-02-12 04:51:15,545 | INFO     | ready for new job
[2026-02-12 05:52:27] 2026-02-12 04:51:15,545 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 05:52:27] 2026-02-12 04:51:15,548 | INFO     | **************************************
[2026-02-12 05:52:27] 2026-02-12 04:51:15,548 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 05:52:27] 2026-02-12 04:51:15,548 | INFO     | **************************************
[2026-02-12 05:52:27] 2026-02-12 04:51:15,548 | INFO     | 
[2026-02-12 05:52:27] 2026-02-12 04:51:15,549 | INFO     | pilot is running in a VM
[2026-02-12 05:52:27] 2026-02-12 04:51:15,549 | INFO     | architecture information:
[2026-02-12 05:52:27] 2026-02-12 04:51:15,560 | INFO     | executing command: cat /etc/os-release
[2026-02-12 05:52:27] 2026-02-12 04:51:15,771 | INFO     | cat /etc/os-release:
[2026-02-12 05:52:27] NAME="CentOS Linux"
[2026-02-12 05:52:27] VERSION="7 (Core)"
[2026-02-12 05:52:27] ID="centos"
[2026-02-12 05:52:27] ID_LIKE="rhel fedora"
[2026-02-12 05:52:27] VERSION_ID="7"
[2026-02-12 05:52:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 05:52:27] ANSI_COLOR="0;31"
[2026-02-12 05:52:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 05:52:27] HOME_URL="https://www.centos.org/"
[2026-02-12 05:52:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 05:52:27] 
[2026-02-12 05:52:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 05:52:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 05:52:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 05:52:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 05:52:27] 
[2026-02-12 05:52:27] 2026-02-12 04:51:15,772 | INFO     | **************************************
[2026-02-12 05:52:27] 2026-02-12 04:51:16,275 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-02-12 05:52:27] 2026-02-12 04:51:16,583 | INFO     | sufficient remaining disk space (494503198720 B)
[2026-02-12 05:52:27] 2026-02-12 04:51:16,583 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 05:52:27] 2026-02-12 04:51:16,583 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 05:52:27] 2026-02-12 04:51:16,583 | INFO     | update_server=False
[2026-02-12 05:52:27] 2026-02-12 04:51:16,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 05:52:27] 2026-02-12 04:51:16,590 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 05:52:27] 2026-02-12 04:51:16,611 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-12 05:52:27] 2026-02-12 04:51:16,611 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-12 05:52:27] 2026-02-12 04:51:16,612 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 05:52:27] 2026-02-12 04:51:16,612 | INFO     | will abort loop
[2026-02-12 05:52:27] 2026-02-12 04:51:16,789 | INFO     | all data control threads have been joined
[2026-02-12 05:52:27] 2026-02-12 04:51:17,068 | INFO     | all job control threads have been joined
[2026-02-12 05:52:27] 2026-02-12 04:51:17,589 | INFO     | [job] retrieve thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:17,601 | INFO     | all payload control threads have been joined
[2026-02-12 05:52:27] 2026-02-12 04:51:17,617 | INFO     | [job] job monitor thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:17,664 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 05:52:27] 2026-02-12 04:51:17,735 | INFO     | [payload] validate_post thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:17,795 | INFO     | [data] control thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:17,861 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:17,875 | INFO     | [data] copytool_in thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:17,945 | INFO     | [job] validate thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:18,041 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:18,057 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 05:52:27] 2026-02-12 04:51:18,061 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:18,074 | INFO     | [job] control thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:18,597 | INFO     | [data] copytool_out thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:18,607 | INFO     | [payload] control thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:18,669 | INFO     | [payload] failed_post thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:18,670 | INFO     | [job] queue monitor thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:18,935 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:22,068 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 05:52:27] 2026-02-12 04:51:44,680 | INFO     | PID=30794 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-12 05:52:27] 2026-02-12 04:51:44,681 | INFO     | .. there are 2 such processes running
[2026-02-12 05:52:27] 2026-02-12 04:51:44,682 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 05:52:27] 2026-02-12 04:51:44,682 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 05:52:27] 2026-02-12 04:51:44,682 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 05:52:27] 2026-02-12 04:52:14,551 | INFO     | [monitor] cgroup control has ended
[2026-02-12 05:52:27] 2026-02-12 04:52:16,342 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139898449938240)>', '<ExcThread(monitor, started 139897864177408)>']
[2026-02-12 05:52:27] 2026-02-12 04:52:16,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 05:52:27] 2026-02-12 04:52:16,876 | INFO     | [monitor] control thread has ended
[2026-02-12 05:52:27] 2026-02-12 04:52:21,368 | INFO     | all workflow threads have been joined
[2026-02-12 05:52:27] 2026-02-12 04:52:21,368 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 05:52:27] 2026-02-12 04:52:21,369 | INFO     | traces error code: 0
[2026-02-12 05:52:27] 2026-02-12 04:52:21,369 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 05:52:27] 2026-02-12 04:52:21,817 [wrapper] ==== pilot stdout END ====
[2026-02-12 05:52:27] 2026-02-12 04:52:21,952 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 05:52:27] 2026-02-12 04:52:22,042 [wrapper] pilotpid: 30794
[2026-02-12 05:52:27] 2026-02-12 04:52:22,151 [wrapper] Pilot exit status: 0
[2026-02-12 05:52:27] 2026-02-12 04:52:22,639 [wrapper] pandaids: 7011743122
[2026-02-12 05:52:27] 2026-02-12 04:52:23,778 [wrapper] cleanup supervisor_pilot  9880 30795
[2026-02-12 05:52:27] 2026-02-12 04:52:23,881 [wrapper] Test setup, not cleaning
[2026-02-12 05:52:27] 2026-02-12 04:52:23,968 [wrapper] apfmon messages muted
[2026-02-12 05:52:27] 2026-02-12 04:52:24,061 [wrapper] ==== wrapper stdout END ====
[2026-02-12 05:52:27] 2026-02-12 04:52:24,184 [wrapper] ==== wrapper stderr END ====
[2026-02-12 05:52:27]  *** Error codes and diagnostics ***
[2026-02-12 05:52:27]     "exeErrorCode": 0,
[2026-02-12 05:52:27]     "exeErrorDiag": "",
[2026-02-12 05:52:27]     "pilotErrorCode": 0,
[2026-02-12 05:52:27]     "pilotErrorDiag": "",
[2026-02-12 05:52:27]  *** Listing of results directory ***
[2026-02-12 05:52:27] total 944672
[2026-02-12 05:52:27] -rw-r--r--. 1 boinc boinc    584627 Feb 11 06:32 pilot3.tar.gz
[2026-02-12 05:52:27] -rwx------. 1 boinc boinc     36322 Feb 11 06:36 runpilot2-wrapper.sh
[2026-02-12 05:52:27] -rw-r--r--. 1 boinc boinc      5111 Feb 11 06:39 queuedata.json
[2026-02-12 05:52:27] -rw-r--r--. 1 boinc boinc       100 Feb 11 23:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 05:52:27] -rwxr-xr-x. 1 boinc boinc      7986 Feb 11 23:29 run_atlas
[2026-02-12 05:52:27] -rw-r--r--. 1 boinc boinc       105 Feb 11 23:29 job.xml
[2026-02-12 05:52:27] -rw-r--r--. 1 boinc boinc      6391 Feb 11 23:29 init_data.xml
[2026-02-12 05:52:27] -rw-r--r--. 2 boinc boinc 673440239 Feb 11 23:29 EVNT.48431094._000667.pool.root.1
[2026-02-12 05:52:27] -rw-r--r--. 2 boinc boinc     15845 Feb 11 23:29 start_atlas.sh
[2026-02-12 05:52:27] drwxrwx--x. 2 boinc boinc        68 Feb 11 23:29 shared
[2026-02-12 05:52:27] -rw-r--r--. 2 boinc boinc    597965 Feb 11 23:29 input.tar.gz
[2026-02-12 05:52:27] -rw-r--r--. 1 boinc boinc         0 Feb 11 23:29 boinc_lockfile
[2026-02-12 05:52:27] -rw-r--r--. 1 boinc boinc      2557 Feb 11 23:29 pandaJob.out
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc       415 Feb 11 23:36 workernode_map.json
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc   1005065 Feb 11 23:36 agis_schedconf.cvmfs.json
[2026-02-12 05:52:27] drwx------. 5 boinc boinc      4096 Feb 11 23:36 pilot3
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc 282430663 Feb 12 05:49 HITS.48431096._029153.pool.root.1
[2026-02-12 05:52:27] -rw-r--r--. 1 boinc boinc       532 Feb 12 05:50 boinc_task_state.xml
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc      1012 Feb 12 05:50 memory_monitor_summary.json
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc   1512955 Feb 12 05:51 agis_ddmendpoints.agis.ALL.json
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc    619122 Feb 12 05:51 log.48431096._029153.job.log.tgz.1
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc      6323 Feb 12 05:51 heartbeat.json
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc        95 Feb 12 05:51 pilot_heartbeat.json
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc      5066 Feb 12 05:52 pilotlog.txt
[2026-02-12 05:52:27] -rw-r--r--. 1 boinc boinc      8192 Feb 12 05:52 boinc_mmap_file
[2026-02-12 05:52:27] -rw-r--r--. 1 boinc boinc        28 Feb 12 05:52 wrapper_checkpoint.txt
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc   3154181 Feb 12 05:52 log.48431096._029153.job.log.1
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc       357 Feb 12 05:52 output.list
[2026-02-12 05:52:27] -rw-r--r--. 1 boinc boinc       620 Feb 12 05:52 runtime_log
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc   3788800 Feb 12 05:52 result.tar.gz
[2026-02-12 05:52:27] -rw-r--r--. 1 boinc boinc      8816 Feb 12 05:52 runtime_log.err
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc       656 Feb 12 05:52 oUAMDmf4HA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmzmjKDmX6A9So.diag
[2026-02-12 05:52:27] -rw-r--r--. 1 boinc boinc     20660 Feb 12 05:52 stderr.txt
[2026-02-12 05:52:27] HITS file was successfully produced:
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc 282430663 Feb 12 05:49 shared/HITS.pool.root.1
[2026-02-12 05:52:27]  *** Contents of shared directory: ***
[2026-02-12 05:52:27] total 937772
[2026-02-12 05:52:27] -rw-r--r--. 2 boinc boinc 673440239 Feb 11 23:29 ATLAS.root_0
[2026-02-12 05:52:27] -rw-r--r--. 2 boinc boinc     15845 Feb 11 23:29 start_atlas.sh
[2026-02-12 05:52:27] -rw-r--r--. 2 boinc boinc    597965 Feb 11 23:29 input.tar.gz
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc 282430663 Feb 12 05:49 HITS.pool.root.1
[2026-02-12 05:52:27] -rw-------. 1 boinc boinc   3788800 Feb 12 05:52 result.tar.gz
05:52:28 (26820): run_atlas exited; CPU time 85461.249435
05:52:28 (26820): called boinc_finish(0)

</stderr_txt>
]]>

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