Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:57:43 (544053): wrapper (7.7.26015): starting
03:57:43 (544053): wrapper: running run_atlas (--nthreads 4)
[2026-02-12 03:57:43] Arguments: --nthreads 4
[2026-02-12 03:57:43] Threads: 4
[2026-02-12 03:57:43] Checking for CVMFS
[2026-02-12 03:57:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 03:57:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 03:57:43] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 03:57:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 03:57:43] 2.9.2.0 3036 3578 94280 156136 0 50 25536959 36864000 0 130560 0 1519429 99.985 110207 2262 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-12 03:57:43] CVMFS is ok
[2026-02-12 03:57:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-12 03:57:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-12 03:57:43] Further information can be found at the LHC@home message board.
[2026-02-12 03:57:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 03:57:43] Checking for apptainer binary...
[2026-02-12 03:57:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 03:57:43] Running /usr/bin/apptainer --version
[2026-02-12 03:57:43] apptainer version 1.4.1-1.1
[2026-02-12 03:57:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 03:57:43] thA334
[2026-02-12 03:57:43] apptainer works
[2026-02-12 03:57:43] Set ATHENA_PROC_NUMBER=4
[2026-02-12 03:57:43] Set ATHENA_CORE_NUMBER=4
[2026-02-12 03:57:43] Starting ATLAS job with PandaID=7011740248
[2026-02-12 03:57:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 05:44:10]  *** The last 200 lines of the pilot log: ***
[2026-02-12 05:44:10] 2026-02-12 04:43:34,261 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 05:44:10] 2026-02-12 04:43:34,261 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 05:44:10] 2026-02-12 04:43:34,261 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 05:44:10] 2026-02-12 04:43:34,261 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 05:44:10] 2026-02-12 04:43:34,261 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 05:44:10] 2026-02-12 04:43:34,261 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 05:44:10] 2026-02-12 04:43:34,261 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 05:44:10] 2026-02-12 04:43:34,261 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 05:44:10] 2026-02-12 04:43:34,261 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 05:44:10] 2026-02-12 04:43:34,261 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 05:44:10] 2026-02-12 04:43:34,261 | INFO     | job 7011740248 has completed (purged errors)
[2026-02-12 05:44:10] 2026-02-12 04:43:34,261 | INFO     | overall cleanup function is called
[2026-02-12 05:44:10] 2026-02-12 04:43:35,268 | INFO     | --- collectZombieJob: --- 10, [552694]
[2026-02-12 05:44:10] 2026-02-12 04:43:35,268 | INFO     | zombie collector waiting for pid 552694
[2026-02-12 05:44:10] 2026-02-12 04:43:35,268 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 05:44:10] 2026-02-12 04:43:35,268 | INFO     | collected zombie processes
[2026-02-12 05:44:10] 2026-02-12 04:43:35,268 | INFO     | will attempt to kill all subprocesses of pid=552694
[2026-02-12 05:44:10] 2026-02-12 04:43:35,309 | INFO     | process IDs to be killed: [552694] (in reverse order)
[2026-02-12 05:44:10] 2026-02-12 04:43:35,341 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 05:44:10] 2026-02-12 04:43:35,341 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 05:44:10] 2026-02-12 04:43:35,342 | INFO     | did not find any defunct processes belonging to 552694
[2026-02-12 05:44:10] 2026-02-12 04:43:35,344 | INFO     | did not find any defunct processes belonging to 552694
[2026-02-12 05:44:10] 2026-02-12 04:43:35,344 | INFO     | ready for new job
[2026-02-12 05:44:10] 2026-02-12 04:43:35,344 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 05:44:10] 2026-02-12 04:43:35,344 | INFO     | **************************************
[2026-02-12 05:44:10] 2026-02-12 04:43:35,344 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 05:44:10] 2026-02-12 04:43:35,344 | INFO     | **************************************
[2026-02-12 05:44:10] 2026-02-12 04:43:35,345 | INFO     | 
[2026-02-12 05:44:10] 2026-02-12 04:43:35,345 | INFO     | architecture information:
[2026-02-12 05:44:10] 2026-02-12 04:43:35,345 | INFO     | executing command: cat /etc/os-release
[2026-02-12 05:44:10] 2026-02-12 04:43:35,358 | INFO     | cat /etc/os-release:
[2026-02-12 05:44:10] NAME="CentOS Linux"
[2026-02-12 05:44:10] VERSION="7 (Core)"
[2026-02-12 05:44:10] ID="centos"
[2026-02-12 05:44:10] ID_LIKE="rhel fedora"
[2026-02-12 05:44:10] VERSION_ID="7"
[2026-02-12 05:44:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 05:44:10] ANSI_COLOR="0;31"
[2026-02-12 05:44:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 05:44:10] HOME_URL="https://www.centos.org/"
[2026-02-12 05:44:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 05:44:10] 
[2026-02-12 05:44:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 05:44:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 05:44:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 05:44:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 05:44:10] 
[2026-02-12 05:44:10] 2026-02-12 04:43:35,358 | INFO     | **************************************
[2026-02-12 05:44:10] 2026-02-12 04:43:35,861 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-12 05:44:10] 2026-02-12 04:43:35,879 | INFO     | sufficient remaining disk space (229297356800 B)
[2026-02-12 05:44:10] 2026-02-12 04:43:35,879 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 05:44:10] 2026-02-12 04:43:35,879 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 05:44:10] 2026-02-12 04:43:35,879 | INFO     | update_server=False
[2026-02-12 05:44:10] 2026-02-12 04:43:35,879 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 05:44:10] 2026-02-12 04:43:35,879 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 05:44:10] 2026-02-12 04:43:35,880 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 05:44:10] 2026-02-12 04:43:35,880 | INFO     | aborting loop
[2026-02-12 05:44:10] 2026-02-12 04:43:35,885 | INFO     | all job control threads have been joined
[2026-02-12 05:44:10] 2026-02-12 04:43:36,881 | INFO     | all data control threads have been joined
[2026-02-12 05:44:10] 2026-02-12 04:43:36,885 | INFO     | [job] queue monitor thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:36,885 | INFO     | [job] retrieve thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:36,886 | INFO     | [job] job monitor thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:36,889 | INFO     | [job] control thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:36,984 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 05:44:10] 2026-02-12 04:43:37,239 | INFO     | all payload control threads have been joined
[2026-02-12 05:44:10] 2026-02-12 04:43:37,292 | INFO     | [payload] validate_post thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:37,821 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:37,850 | INFO     | [job] validate thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:37,886 | INFO     | [data] control thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:37,946 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:38,097 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:38,245 | INFO     | [payload] control thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:38,269 | INFO     | [data] copytool_in thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:38,342 | INFO     | [payload] failed_post thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:38,991 | INFO     | [data] copytool_out thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:39,318 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 05:44:10] 2026-02-12 04:43:43,325 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:43:46,458 | INFO     | job.realtimelogging is not enabled
[2026-02-12 05:44:10] 2026-02-12 04:43:47,464 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 05:44:10] 2026-02-12 04:44:03,098 | INFO     | [monitor] cgroup control has ended
[2026-02-12 05:44:10] 2026-02-12 04:44:04,963 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139867380401984)>', '<ExcThread(monitor, started 139866566268672)>']
[2026-02-12 05:44:10] 2026-02-12 04:44:06,267 | INFO     | PID=548175 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-12 05:44:10] 2026-02-12 04:44:06,267 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 05:44:10] 2026-02-12 04:44:06,267 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 05:44:10] 2026-02-12 04:44:06,267 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 05:44:10] 2026-02-12 04:44:06,267 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 05:44:10] 2026-02-12 04:44:06,267 | INFO     | [monitor] control thread has ended
[2026-02-12 05:44:10] 2026-02-12 04:44:09,989 | INFO     | all workflow threads have been joined
[2026-02-12 05:44:10] 2026-02-12 04:44:09,989 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 05:44:10] 2026-02-12 04:44:09,989 | INFO     | traces error code: 0
[2026-02-12 05:44:10] 2026-02-12 04:44:09,989 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 05:44:10] 2026-02-12 04:44:10,059 [wrapper] ==== pilot stdout END ====
[2026-02-12 05:44:10] 2026-02-12 04:44:10,062 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 05:44:10] 2026-02-12 04:44:10,067 [wrapper] pilotpid: 548175
[2026-02-12 05:44:10] 2026-02-12 04:44:10,070 [wrapper] Pilot exit status: 0
[2026-02-12 05:44:10] 2026-02-12 04:44:10,081 [wrapper] pandaids: 7011740248
[2026-02-12 05:44:10] 2026-02-12 04:44:10,102 [wrapper] cleanup supervisor_pilot  558128 548176
[2026-02-12 05:44:10] 2026-02-12 04:44:10,105 [wrapper] Test setup, not cleaning
[2026-02-12 05:44:10] 2026-02-12 04:44:10,109 [wrapper] apfmon messages muted
[2026-02-12 05:44:10] 2026-02-12 04:44:10,113 [wrapper] ==== wrapper stdout END ====
[2026-02-12 05:44:10] 2026-02-12 04:44:10,116 [wrapper] ==== wrapper stderr END ====
[2026-02-12 05:44:10]  *** Error codes and diagnostics ***
[2026-02-12 05:44:10]     "exeErrorCode": 0,
[2026-02-12 05:44:10]     "exeErrorDiag": "",
[2026-02-12 05:44:10]     "pilotErrorCode": 0,
[2026-02-12 05:44:10]     "pilotErrorDiag": "",
[2026-02-12 05:44:10]  *** Listing of results directory ***
[2026-02-12 05:44:10] total 953292
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc    584627 Feb 11 06:32 pilot3.tar.gz
[2026-02-12 05:44:10] -rwx------ 1 boinc boinc     36322 Feb 11 06:33 runpilot2-wrapper.sh
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc      5111 Feb 11 06:33 queuedata.json
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc       100 Feb 12 03:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 05:44:10] -rwxr-xr-x 1 boinc boinc      7986 Feb 12 03:57 run_atlas
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc       105 Feb 12 03:57 job.xml
[2026-02-12 05:44:10] -rw-r--r-- 2 boinc boinc 684445385 Feb 12 03:57 EVNT.48431094._000659.pool.root.1
[2026-02-12 05:44:10] -rw-r--r-- 2 boinc boinc    597960 Feb 12 03:57 input.tar.gz
[2026-02-12 05:44:10] -rw-r--r-- 2 boinc boinc     15845 Feb 12 03:57 start_atlas.sh
[2026-02-12 05:44:10] drwxrwx--x 2 boinc boinc      4096 Feb 12 03:57 shared
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc         0 Feb 12 03:57 boinc_setup_complete
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc      6369 Feb 12 03:57 init_data.xml
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc         0 Feb 12 03:57 boinc_lockfile
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc      2557 Feb 12 03:57 pandaJob.out
[2026-02-12 05:44:10] -rw------- 1 boinc boinc   1005065 Feb 12 03:57 agis_schedconf.cvmfs.json
[2026-02-12 05:44:10] -rw------- 1 boinc boinc   1512955 Feb 12 03:57 agis_ddmendpoints.agis.ALL.json
[2026-02-12 05:44:10] -rw------- 1 boinc boinc       426 Feb 12 03:57 workernode_map.json
[2026-02-12 05:44:10] drwx------ 5 boinc boinc      4096 Feb 12 03:57 pilot3
[2026-02-12 05:44:10] -rw------- 1 boinc boinc 285336426 Feb 12 05:43 HITS.48431096._028739.pool.root.1
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc       530 Feb 12 05:43 boinc_task_state.xml
[2026-02-12 05:44:10] -rw------- 1 boinc boinc        95 Feb 12 05:43 pilot_heartbeat.json
[2026-02-12 05:44:10] -rw------- 1 boinc boinc      1022 Feb 12 05:43 memory_monitor_summary.json
[2026-02-12 05:44:10] -rw------- 1 boinc boinc    316081 Feb 12 05:43 log.48431096._028739.job.log.tgz.1
[2026-02-12 05:44:10] -rw------- 1 boinc boinc      6311 Feb 12 05:43 heartbeat.json
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc      8192 Feb 12 05:43 boinc_mmap_file
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc        27 Feb 12 05:43 wrapper_checkpoint.txt
[2026-02-12 05:44:10] -rw------- 1 boinc boinc      4819 Feb 12 05:44 pilotlog.txt
[2026-02-12 05:44:10] -rw------- 1 boinc boinc    916535 Feb 12 05:44 log.48431096._028739.job.log.1
[2026-02-12 05:44:10] -rw------- 1 boinc boinc       357 Feb 12 05:44 output.list
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc       620 Feb 12 05:44 runtime_log
[2026-02-12 05:44:10] -rw------- 1 boinc boinc   1249280 Feb 12 05:44 result.tar.gz
[2026-02-12 05:44:10] -rw------- 1 boinc boinc       657 Feb 12 05:44 uHwKDmz1HA9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmEfjKDmg5knxm.diag
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc      8896 Feb 12 05:44 runtime_log.err
[2026-02-12 05:44:10] -rw-r--r-- 1 boinc boinc     11906 Feb 12 05:44 stderr.txt
[2026-02-12 05:44:10] HITS file was successfully produced:
[2026-02-12 05:44:10] -rw------- 1 boinc boinc 285336426 Feb 12 05:43 shared/HITS.pool.root.1
[2026-02-12 05:44:10]  *** Contents of shared directory: ***
[2026-02-12 05:44:10] total 948884
[2026-02-12 05:44:10] -rw-r--r-- 2 boinc boinc 684445385 Feb 12 03:57 ATLAS.root_0
[2026-02-12 05:44:10] -rw-r--r-- 2 boinc boinc    597960 Feb 12 03:57 input.tar.gz
[2026-02-12 05:44:10] -rw-r--r-- 2 boinc boinc     15845 Feb 12 03:57 start_atlas.sh
[2026-02-12 05:44:10] -rw------- 1 boinc boinc 285336426 Feb 12 05:43 HITS.pool.root.1
[2026-02-12 05:44:10] -rw------- 1 boinc boinc   1249280 Feb 12 05:44 result.tar.gz
05:44:11 (544053): run_atlas exited; CPU time 24069.731293
05:44:11 (544053): called boinc_finish(0)

</stderr_txt>
]]>

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