Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
12:27:04 (32091): wrapper (7.7.26015): starting
12:27:04 (32091): wrapper: running run_atlas (--nthreads 8)
[2026-02-11 12:27:04] Arguments: --nthreads 8
[2026-02-11 12:27:04] Threads: 8
[2026-02-11 12:27:04] Checking for CVMFS
[2026-02-11 12:27:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-11 12:27:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-11 12:27:04] Running cvmfs_config stat atlas.cern.ch
[2026-02-11 12:27:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-11 12:27:07] 2.11.0.0 4202 176905 76048 156114 0 1 3964648 4096001 0 130560 3 6245977 99.247 11690618 492 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-11 12:27:07] CVMFS is ok
[2026-02-11 12:27:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-11 12:27:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-11 12:27:07] Further information can be found at the LHC@home message board.
[2026-02-11 12:27:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-11 12:27:07] Checking for apptainer binary...
[2026-02-11 12:27:07] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-11 12:27:07] apptainer is not installed, using version from CVMFS
[2026-02-11 12:27:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-11 12:27:07] WARNING: Environment variable TMPDIR already has value [/tmp/job_11088121/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node336
[2026-02-11 12:27:07] apptainer works
[2026-02-11 12:27:07] Set ATHENA_PROC_NUMBER=8
[2026-02-11 12:27:07] Set ATHENA_CORE_NUMBER=8
[2026-02-11 12:27:07] Starting ATLAS job with PandaID=7007444469
[2026-02-11 12:27:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11088121/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-11 13:15:28]  *** The last 200 lines of the pilot log: ***
[2026-02-11 13:15:28]  filetype=log
[2026-02-11 13:15:28]  guid=4a0e48b4-f491-46f6-93de-0d235af8b149
[2026-02-11 13:15:28]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-11 13:15:28]  is_altstaged=None
[2026-02-11 13:15:28]  is_tar=False
[2026-02-11 13:15:28]  lfn=log.48442031._008223.job.log.tgz.1
[2026-02-11 13:15:28]  mtime=0
[2026-02-11 13:15:28]  protocol_id=None
[2026-02-11 13:15:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-11 13:15:28]  replicas=None
[2026-02-11 13:15:28]  scope=mc23_13p6TeV
[2026-02-11 13:15:28]  status=None
[2026-02-11 13:15:28]  status_code=0
[2026-02-11 13:15:28]  storage_token=
[2026-02-11 13:15:28]  surl=/tmp/job_11088121/atlas/pilot/slots/0/PanDA_Pilot-7007444469/log.48442031._008223.job.log.tgz.1
[2026-02-11 13:15:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/8e/log.48442031._008223.job.log.tgz.1
[2026-02-11 13:15:28]  workdir=None
[2026-02-11 13:15:28] ]
[2026-02-11 13:15:28] 2026-02-11 12:14:23,878 | INFO     | transferring file log.48442031._008223.job.log.tgz.1 from /tmp/job_11088121/atlas/pilot/slots/0/PanDA_Pilot-7007444469/log.48442031._008223.job.log.tgz.1 to /tmp/j
[2026-02-11 13:15:28] 2026-02-11 12:14:23,878 | INFO     | executing command: /usr/bin/env mv /tmp/job_11088121/atlas/pilot/slots/0/PanDA_Pilot-7007444469/log.48442031._008223.job.log.tgz.1 /tmp/job_11088121/atlas/pilot/sl
[2026-02-11 13:15:28] 2026-02-11 12:14:23,886 | INFO     | adding to output.list: log.48442031._008223.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/8e/log.48442031._008223.job.log.tg
[2026-02-11 13:15:28] 2026-02-11 12:14:23,886 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-11 13:15:28] 2026-02-11 12:14:23,886 | INFO     | summary of transferred files:
[2026-02-11 13:15:28] 2026-02-11 12:14:23,886 | INFO     |  -- lfn=log.48442031._008223.job.log.tgz.1, status_code=0, status=transferred
[2026-02-11 13:15:28] 2026-02-11 12:14:23,886 | INFO     | stage-out finished correctly
[2026-02-11 13:15:28] 2026-02-11 12:14:24,656 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-11 13:15:28] 2026-02-11 12:14:24,701 | INFO     | job 7007444469 has state=finished
[2026-02-11 13:15:28] 2026-02-11 12:14:24,701 | INFO     | preparing for final server update for job 7007444469 in state='finished'
[2026-02-11 13:15:28] 2026-02-11 12:14:24,702 | INFO     | reading metadata from: /tmp/job_11088121/atlas/pilot/slots/0/PanDA_Pilot-7007444469/jobReport.json
[2026-02-11 13:15:28] 2026-02-11 12:14:24,703 | INFO     | added worker_node to metadata from /tmp/job_11088121/atlas/pilot/slots/0/workernode_map.json
[2026-02-11 13:15:28] 2026-02-11 12:14:24,703 | INFO     | this job has now completed (state=finished)
[2026-02-11 13:15:28] 2026-02-11 12:14:24,703 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-11 13:15:28] 2026-02-11 12:14:24,703 | INFO     | log transfer has been attempted: DONE
[2026-02-11 13:15:28] 2026-02-11 12:14:24,703 | INFO     | job 7007444469 has finished - writing final server update
[2026-02-11 13:15:28] 2026-02-11 12:14:24,703 | INFO     | total number of processed events: 400 (read)
[2026-02-11 13:15:28] 2026-02-11 12:14:24,720 | INFO     | using path: /tmp/job_11088121/atlas/pilot/slots/0/PanDA_Pilot-7007444469/memory_monitor_summary.json (trf name=prmon)
[2026-02-11 13:15:28] 2026-02-11 12:14:24,720 | INFO     | extracted standard info from prmon json
[2026-02-11 13:15:28] 2026-02-11 12:14:24,720 | INFO     | extracted standard memory fields from prmon json
[2026-02-11 13:15:28] 2026-02-11 12:14:24,720 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-11 13:15:28] 2026-02-11 12:14:24,721 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-11 13:15:28] 2026-02-11 12:14:24,721 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-11 13:15:28] 2026-02-11 12:14:24,721 | INFO     | fitting pss+swap vs Time
[2026-02-11 13:15:28] 2026-02-11 12:14:24,721 | INFO     | sum of square deviations: 18381740.0
[2026-02-11 13:15:28] 2026-02-11 12:14:24,721 | INFO     | sum of deviations: 192307014.0
[2026-02-11 13:15:28] 2026-02-11 12:14:24,721 | INFO     | mean x: 1770810719.0
[2026-02-11 13:15:28] 2026-02-11 12:14:24,721 | INFO     | mean y: 2737180.5384615385
[2026-02-11 13:15:28] 2026-02-11 12:14:24,721 | INFO     | intersect: -18523219651.082653
[2026-02-11 13:15:28] 2026-02-11 12:14:24,722 | INFO     | chi2: 6.352556859991815e-05
[2026-02-11 13:15:28] 2026-02-11 12:14:24,722 | INFO     | current memory leak: 10.46 B/s (using 39 data points, chi2=0.00)
[2026-02-11 13:15:28] 2026-02-11 12:14:24,722 | INFO     | could have reported an average CPU frequency of 2380 MHz (5 samples)
[2026-02-11 13:15:28] 2026-02-11 12:14:24,722 | INFO     | ..............................
[2026-02-11 13:15:28] 2026-02-11 12:14:24,722 | INFO     | . Timing measurements:
[2026-02-11 13:15:28] 2026-02-11 12:14:24,722 | INFO     | . get job = 0 s
[2026-02-11 13:15:28] 2026-02-11 12:14:24,722 | INFO     | . initial setup = 2 s
[2026-02-11 13:15:28] 2026-02-11 12:14:24,722 | INFO     | . payload setup = 3 s
[2026-02-11 13:15:28] 2026-02-11 12:14:24,722 | INFO     | . stage-in = 0 s
[2026-02-11 13:15:28] 2026-02-11 12:14:24,722 | INFO     | . payload execution = 2807 s
[2026-02-11 13:15:28] 2026-02-11 12:14:24,722 | INFO     | . stage-out = 0 s
[2026-02-11 13:15:28] 2026-02-11 12:14:24,722 | INFO     | . log creation = 0 s
[2026-02-11 13:15:28] 2026-02-11 12:14:24,722 | INFO     | ..............................
[2026-02-11 13:15:28] 2026-02-11 12:14:24,799 | INFO     | 
[2026-02-11 13:15:28] 2026-02-11 12:14:24,799 | INFO     | job summary report
[2026-02-11 13:15:28] 2026-02-11 12:14:24,799 | INFO     | --------------------------------------------------
[2026-02-11 13:15:28] 2026-02-11 12:14:24,799 | INFO     | PanDA job id: 7007444469
[2026-02-11 13:15:28] 2026-02-11 12:14:24,799 | INFO     | task id: 48442031
[2026-02-11 13:15:28] 2026-02-11 12:14:24,799 | INFO     | errors: (none)
[2026-02-11 13:15:28] 2026-02-11 12:14:24,799 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-11 13:15:28] 2026-02-11 12:14:24,799 | INFO     | pilot state: finished 
[2026-02-11 13:15:28] 2026-02-11 12:14:24,799 | INFO     | transexitcode: 0
[2026-02-11 13:15:28] 2026-02-11 12:14:24,799 | INFO     | exeerrorcode: 0
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | exeerrordiag: 
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | exitcode: 0
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | exitmsg: OK
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | cpuconsumptiontime: 18608 s
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | nevents: 400
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | neventsw: 0
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | pid: 8376
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | pgrp: 8376
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | corecount: 8
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | event service: False
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | sizes: {0: 2281754, 1: 2282326, 11: 2282326, 2814: 2307815, 2815: 2316898, 2816: 2317252}
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | --------------------------------------------------
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | 
[2026-02-11 13:15:28] 2026-02-11 12:14:24,800 | INFO     | executing command: ls -lF /tmp/job_11088121/atlas/pilot/slots/0
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,809 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,810 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,810 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-11 13:15:28] 2026-02-11 12:14:24,810 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,810 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-11 13:15:28] 2026-02-11 12:14:24,810 | INFO     | job 7007444469 has completed (purged errors)
[2026-02-11 13:15:28] 2026-02-11 12:14:24,810 | INFO     | overall cleanup function is called
[2026-02-11 13:15:28] 2026-02-11 12:14:25,815 | INFO     | --- collectZombieJob: --- 10, [8376]
[2026-02-11 13:15:28] 2026-02-11 12:14:25,816 | INFO     | zombie collector waiting for pid 8376
[2026-02-11 13:15:28] 2026-02-11 12:14:25,816 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-11 13:15:28] 2026-02-11 12:14:25,816 | INFO     | collected zombie processes
[2026-02-11 13:15:28] 2026-02-11 12:14:25,816 | INFO     | will attempt to kill all subprocesses of pid=8376
[2026-02-11 13:15:28] 2026-02-11 12:14:25,910 | INFO     | process IDs to be killed: [8376] (in reverse order)
[2026-02-11 13:15:28] 2026-02-11 12:14:25,942 | WARNING  | found no corresponding commands to process id(s)
[2026-02-11 13:15:28] 2026-02-11 12:14:25,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-11 13:15:28] 2026-02-11 12:14:25,946 | INFO     | did not find any defunct processes belonging to 8376
[2026-02-11 13:15:28] 2026-02-11 12:14:25,949 | INFO     | did not find any defunct processes belonging to 8376
[2026-02-11 13:15:28] 2026-02-11 12:14:25,949 | INFO     | ready for new job
[2026-02-11 13:15:28] 2026-02-11 12:14:25,949 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-11 13:15:28] 2026-02-11 12:14:25,949 | INFO     | **************************************
[2026-02-11 13:15:28] 2026-02-11 12:14:25,950 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-11 13:15:28] 2026-02-11 12:14:25,950 | INFO     | **************************************
[2026-02-11 13:15:28] 2026-02-11 12:14:25,950 | INFO     | 
[2026-02-11 13:15:28] 2026-02-11 12:14:25,963 | INFO     | architecture information:
[2026-02-11 13:15:28] 2026-02-11 12:14:25,963 | INFO     | executing command: cat /etc/os-release
[2026-02-11 13:15:28] 2026-02-11 12:14:25,968 | INFO     | cat /etc/os-release:
[2026-02-11 13:15:28] NAME="CentOS Linux"
[2026-02-11 13:15:28] VERSION="7 (Core)"
[2026-02-11 13:15:28] ID="centos"
[2026-02-11 13:15:28] ID_LIKE="rhel fedora"
[2026-02-11 13:15:28] VERSION_ID="7"
[2026-02-11 13:15:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-11 13:15:28] ANSI_COLOR="0;31"
[2026-02-11 13:15:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-11 13:15:28] HOME_URL="https://www.centos.org/"
[2026-02-11 13:15:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-11 13:15:28] 
[2026-02-11 13:15:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-11 13:15:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-11 13:15:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-11 13:15:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-11 13:15:28] 
[2026-02-11 13:15:28] 2026-02-11 12:14:25,968 | INFO     | **************************************
[2026-02-11 13:15:28] 2026-02-11 12:14:26,471 | INFO     | executing command: df -mP /tmp/job_11088121/atlas/pilot/slots/0
[2026-02-11 13:15:28] 2026-02-11 12:14:26,477 | INFO     | sufficient remaining disk space (220364537856 B)
[2026-02-11 13:15:28] 2026-02-11 12:14:26,477 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-11 13:15:28] 2026-02-11 12:14:26,477 | INFO     | current server update state: UPDATING_FINAL
[2026-02-11 13:15:28] 2026-02-11 12:14:26,477 | INFO     | update_server=False
[2026-02-11 13:15:28] 2026-02-11 12:14:26,477 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-11 13:15:28] 2026-02-11 12:14:26,477 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-11 13:15:28] 2026-02-11 12:14:26,477 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-11 13:15:28] 2026-02-11 12:14:26,740 | INFO     | all data control threads have been joined
[2026-02-11 13:15:28] 2026-02-11 12:14:26,789 | INFO     | all job control threads have been joined
[2026-02-11 13:15:28] 2026-02-11 12:14:26,941 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-11 13:15:28] 2026-02-11 12:14:27,482 | INFO     | [job] retrieve thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:27,482 | INFO     | [job] queue monitor thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:27,491 | INFO     | [payload] execute_payloads thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:27,498 | INFO     | all payload control threads have been joined
[2026-02-11 13:15:28] 2026-02-11 12:14:27,613 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:27,736 | INFO     | [payload] validate_post thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:27,745 | INFO     | [data] control thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:27,794 | INFO     | [job] control thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:28,028 | INFO     | [job] create_data_payload thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:28,308 | INFO     | [data] copytool_in thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:28,501 | INFO     | [payload] validate_pre thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:28,503 | INFO     | [payload] control thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:28,640 | INFO     | [payload] failed_post thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:28,916 | INFO     | [job] validate thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:28,946 | INFO     | [data] copytool_out thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:29,548 | WARNING  | process 8376 can no longer be monitored (due to stat problems) - aborting
[2026-02-11 13:15:28] 2026-02-11 12:14:29,623 | INFO     | using path: /tmp/job_11088121/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-11 13:15:28] 2026-02-11 12:14:29,712 | INFO     | number of running child processes to parent process 8376: 1
[2026-02-11 13:15:28] 2026-02-11 12:14:29,712 | INFO     | maximum number of monitored processes: 6
[2026-02-11 13:15:28] 2026-02-11 12:14:29,712 | INFO     | aborting job monitoring since job object (job id=7007444469) has expired
[2026-02-11 13:15:28] 2026-02-11 12:14:29,712 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-11 13:15:28] 2026-02-11 12:14:29,712 | INFO     | will abort loop
[2026-02-11 13:15:28] 2026-02-11 12:14:30,482 | INFO     | [data] queue_monitor thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:30,717 | INFO     | [job] job monitor thread has finished
[2026-02-11 13:15:28] 2026-02-11 12:14:56,604 | INFO     | PID=3686 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-11 13:15:28] 2026-02-11 12:14:56,604 | INFO     | .. there are 2 such processes running
[2026-02-11 13:15:28] 2026-02-11 12:14:56,605 | INFO     | found 0 job(s) in 20 queues
[2026-02-11 13:15:28] 2026-02-11 12:14:56,605 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-11 13:15:28] 2026-02-11 12:14:56,605 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-11 13:15:28] 2026-02-11 12:15:22,128 | INFO     | [monitor] cgroup control has ended
[2026-02-11 13:15:28] 2026-02-11 12:15:23,669 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-02-11 13:15:28] 2026-02-11 12:15:23,739 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-11 13:15:28] 2026-02-11 12:15:23,740 | INFO     | [monitor] control thread has ended
[2026-02-11 13:15:28] 2026-02-11 12:15:28,694 | INFO     | all workflow threads have been joined
[2026-02-11 13:15:28] 2026-02-11 12:15:28,694 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-11 13:15:28] 2026-02-11 12:15:28,695 | INFO     | traces error code: 0
[2026-02-11 13:15:28] 2026-02-11 12:15:28,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-11 13:15:28] 2026-02-11 12:15:28,745 [wrapper] ==== pilot stdout END ====
[2026-02-11 13:15:28] 2026-02-11 12:15:28,746 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-11 13:15:28] 2026-02-11 12:15:28,747 [wrapper] pilotpid: 3686
[2026-02-11 13:15:28] 2026-02-11 12:15:28,749 [wrapper] Pilot exit status: 0
[2026-02-11 13:15:28] 2026-02-11 12:15:28,753 [wrapper] pandaids: 7007444469
[2026-02-11 13:15:28] 2026-02-11 12:15:28,774 [wrapper] cleanup supervisor_pilot  3549 3687
[2026-02-11 13:15:28] 2026-02-11 12:15:28,775 [wrapper] Test setup, not cleaning
[2026-02-11 13:15:28] 2026-02-11 12:15:28,777 [wrapper] apfmon messages muted
[2026-02-11 13:15:28] 2026-02-11 12:15:28,778 [wrapper] ==== wrapper stdout END ====
[2026-02-11 13:15:28] 2026-02-11 12:15:28,779 [wrapper] ==== wrapper stderr END ====
[2026-02-11 13:15:28]  *** Error codes and diagnostics ***
[2026-02-11 13:15:28]     "exeErrorCode": 0,
[2026-02-11 13:15:28]     "exeErrorDiag": "",
[2026-02-11 13:15:28]     "pilotErrorCode": 0,
[2026-02-11 13:15:28]     "pilotErrorDiag": "",
[2026-02-11 13:15:28]  *** Listing of results directory ***
[2026-02-11 13:15:28] total 661600
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user    584627 Feb 10 11:23 pilot3.tar.gz
[2026-02-11 13:15:28] -rwx------ 1 mf493845 unix-user     36322 Feb 10 11:24 runpilot2-wrapper.sh
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user      5111 Feb 10 11:25 queuedata.json
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user       100 Feb 11 10:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-11 13:15:28] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb 11 10:21 run_atlas
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user       105 Feb 11 10:21 job.xml
[2026-02-11 13:15:28] -rw-r--r-- 2 mf493845 unix-user 492943703 Feb 11 12:27 EVNT.48442027._000141.pool.root.1
[2026-02-11 13:15:28] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 11 12:27 start_atlas.sh
[2026-02-11 13:15:28] drwxrwx--x 2 mf493845 unix-user       100 Feb 11 12:27 shared
[2026-02-11 13:15:28] -rw-r--r-- 2 mf493845 unix-user    597952 Feb 11 12:27 input.tar.gz
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user      6389 Feb 11 12:27 init_data.xml
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user         0 Feb 11 12:27 boinc_setup_complete
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user      8192 Feb 11 12:27 boinc_mmap_file
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user         0 Feb 11 12:27 boinc_lockfile
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user      2528 Feb 11 12:27 pandaJob.out
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user   1009239 Feb 11 12:27 agis_schedconf.cvmfs.json
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user   1512955 Feb 11 12:27 agis_ddmendpoints.agis.ALL.json
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user       411 Feb 11 12:27 workernode_map.json
[2026-02-11 13:15:28] drwx------ 5 mf493845 unix-user       440 Feb 11 12:27 pilot3
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user 179103880 Feb 11 13:14 HITS.48442031._008223.pool.root.1
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user      1013 Feb 11 13:14 memory_monitor_summary.json
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user    305089 Feb 11 13:14 log.48442031._008223.job.log.tgz.1
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user      6300 Feb 11 13:14 heartbeat.json
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user        95 Feb 11 13:14 pilot_heartbeat.json
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user      5360 Feb 11 13:15 pilotlog.txt
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user    453128 Feb 11 13:15 log.48442031._008223.job.log.1
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user       357 Feb 11 13:15 output.list
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user       620 Feb 11 13:15 runtime_log
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user    778240 Feb 11 13:15 result.tar.gz
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user      9219 Feb 11 13:15 runtime_log.err
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user       643 Feb 11 13:15 InrKDmt5z98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmIwhKDmI7EkQn.diag
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user     21803 Feb 11 13:15 stderr.txt
[2026-02-11 13:15:28] HITS file was successfully produced:
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user 179103880 Feb 11 13:14 shared/HITS.pool.root.1
[2026-02-11 13:15:28]  *** Contents of shared directory: ***
[2026-02-11 13:15:28] total 657660
[2026-02-11 13:15:28] -rw-r--r-- 2 mf493845 unix-user 492943703 Feb 11 12:27 ATLAS.root_0
[2026-02-11 13:15:28] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 11 12:27 start_atlas.sh
[2026-02-11 13:15:28] -rw-r--r-- 2 mf493845 unix-user    597952 Feb 11 12:27 input.tar.gz
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user 179103880 Feb 11 13:14 HITS.pool.root.1
[2026-02-11 13:15:28] -rw------- 1 mf493845 unix-user    778240 Feb 11 13:15 result.tar.gz
13:15:30 (32091): run_atlas exited; CPU time 18642.948044
13:15:30 (32091): called boinc_finish(0)

</stderr_txt>
]]>

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