Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:17:33 (30158): wrapper (7.7.26015): starting
13:17:33 (30158): wrapper: running run_atlas (--nthreads 8)
[2026-02-11 13:17:33] Arguments: --nthreads 8
[2026-02-11 13:17:33] Threads: 8
[2026-02-11 13:17:33] Checking for CVMFS
[2026-02-11 13:17:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-11 13:17:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-11 13:17:33] Running cvmfs_config stat atlas.cern.ch
[2026-02-11 13:17:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-11 13:17:33] 2.11.0.0 4400 176399 94052 156114 0 188 2678711 4096000 1834 130560 2 18354513 99.595 16443413 634 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-11 13:17:33] CVMFS is ok
[2026-02-11 13:17:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-11 13:17:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-11 13:17:33] Further information can be found at the LHC@home message board.
[2026-02-11 13:17:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-11 13:17:33] Checking for apptainer binary...
[2026-02-11 13:17:33] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-11 13:17:33] apptainer is not installed, using version from CVMFS
[2026-02-11 13:17:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-11 13:17:33] WARNING: Environment variable TMPDIR already has value [/tmp/job_11088143/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node344
[2026-02-11 13:17:33] apptainer works
[2026-02-11 13:17:33] Set ATHENA_PROC_NUMBER=8
[2026-02-11 13:17:33] Set ATHENA_CORE_NUMBER=8
[2026-02-11 13:17:33] Starting ATLAS job with PandaID=7010004500
[2026-02-11 13:17:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11088143/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-11 14:29:53]  *** The last 200 lines of the pilot log: ***
[2026-02-11 14:29:53]  is_tar=False
[2026-02-11 14:29:53]  lfn=log.48431096._021941.job.log.tgz.1
[2026-02-11 14:29:53]  mtime=0
[2026-02-11 14:29:53]  protocol_id=None
[2026-02-11 14:29:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-11 14:29:53]  replicas=None
[2026-02-11 14:29:53]  scope=mc23_13p6TeV
[2026-02-11 14:29:53]  status=None
[2026-02-11 14:29:53]  status_code=0
[2026-02-11 14:29:53]  storage_token=
[2026-02-11 14:29:53]  surl=/tmp/job_11088143/atlas/pilot/slots/0/PanDA_Pilot-7010004500/log.48431096._021941.job.log.tgz.1
[2026-02-11 14:29:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/4e/log.48431096._021941.job.log.tgz.1
[2026-02-11 14:29:53]  workdir=None
[2026-02-11 14:29:53] ]
[2026-02-11 14:29:53] 2026-02-11 13:29:13,298 | INFO     | transferring file log.48431096._021941.job.log.tgz.1 from /tmp/job_11088143/atlas/pilot/slots/0/PanDA_Pilot-7010004500/log.48431096._021941.job.log.tgz.1 to /tmp/j
[2026-02-11 14:29:53] 2026-02-11 13:29:13,298 | INFO     | executing command: /usr/bin/env mv /tmp/job_11088143/atlas/pilot/slots/0/PanDA_Pilot-7010004500/log.48431096._021941.job.log.tgz.1 /tmp/job_11088143/atlas/pilot/sl
[2026-02-11 14:29:53] 2026-02-11 13:29:13,307 | INFO     | adding to output.list: log.48431096._021941.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/4e/log.48431096._021941.job.log.tg
[2026-02-11 14:29:53] 2026-02-11 13:29:13,308 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-11 14:29:53] 2026-02-11 13:29:13,308 | INFO     | summary of transferred files:
[2026-02-11 14:29:53] 2026-02-11 13:29:13,308 | INFO     |  -- lfn=log.48431096._021941.job.log.tgz.1, status_code=0, status=transferred
[2026-02-11 14:29:53] 2026-02-11 13:29:13,308 | INFO     | stage-out finished correctly
[2026-02-11 14:29:53] 2026-02-11 13:29:13,835 | WARNING  | process 6455 can no longer be monitored (due to stat problems) - aborting
[2026-02-11 14:29:53] 2026-02-11 13:29:13,835 | INFO     | using path: /tmp/job_11088143/atlas/pilot/slots/0/PanDA_Pilot-7010004500/memory_monitor_summary.json (trf name=prmon)
[2026-02-11 14:29:53] 2026-02-11 13:29:13,927 | INFO     | number of running child processes to parent process 6455: 1
[2026-02-11 14:29:53] 2026-02-11 13:29:13,927 | INFO     | maximum number of monitored processes: 6
[2026-02-11 14:29:53] 2026-02-11 13:29:14,691 | INFO     | time since job start (4294s) is within the limit (349056.0s)
[2026-02-11 14:29:53] 2026-02-11 13:29:15,660 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-11 14:29:53] 2026-02-11 13:29:16,430 | INFO     | monitor loop #327: job 0:7010004500 is in state 'finished'
[2026-02-11 14:29:53] 2026-02-11 13:29:16,430 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-11 14:29:53] 2026-02-11 13:29:16,701 | INFO     | time since job start (4296s) is within the limit (349056.0s)
[2026-02-11 14:29:53] 2026-02-11 13:29:17,792 | INFO     | job 7010004500 has state=finished
[2026-02-11 14:29:53] 2026-02-11 13:29:17,792 | INFO     | preparing for final server update for job 7010004500 in state='finished'
[2026-02-11 14:29:53] 2026-02-11 13:29:17,792 | INFO     | reading metadata from: /tmp/job_11088143/atlas/pilot/slots/0/PanDA_Pilot-7010004500/jobReport.json
[2026-02-11 14:29:53] 2026-02-11 13:29:17,793 | INFO     | added worker_node to metadata from /tmp/job_11088143/atlas/pilot/slots/0/workernode_map.json
[2026-02-11 14:29:53] 2026-02-11 13:29:17,793 | INFO     | this job has now completed (state=finished)
[2026-02-11 14:29:53] 2026-02-11 13:29:17,793 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-11 14:29:53] 2026-02-11 13:29:17,794 | INFO     | log transfer has been attempted: DONE
[2026-02-11 14:29:53] 2026-02-11 13:29:17,794 | INFO     | job 7010004500 has finished - writing final server update
[2026-02-11 14:29:53] 2026-02-11 13:29:17,794 | INFO     | total number of processed events: 400 (read)
[2026-02-11 14:29:53] 2026-02-11 13:29:17,810 | INFO     | using path: /tmp/job_11088143/atlas/pilot/slots/0/PanDA_Pilot-7010004500/memory_monitor_summary.json (trf name=prmon)
[2026-02-11 14:29:53] 2026-02-11 13:29:17,811 | INFO     | extracted standard info from prmon json
[2026-02-11 14:29:53] 2026-02-11 13:29:17,811 | INFO     | extracted standard memory fields from prmon json
[2026-02-11 14:29:53] 2026-02-11 13:29:17,811 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-11 14:29:53] 2026-02-11 13:29:17,811 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-11 14:29:53] 2026-02-11 13:29:17,811 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-11 14:29:53] 2026-02-11 13:29:17,812 | INFO     | fitting pss+swap vs Time
[2026-02-11 14:29:53] 2026-02-11 13:29:17,812 | INFO     | sum of square deviations: 81266640.0
[2026-02-11 14:29:53] 2026-02-11 13:29:17,812 | INFO     | sum of deviations: -1356686451.5
[2026-02-11 14:29:53] 2026-02-11 13:29:17,812 | INFO     | mean x: 1770814503.5
[2026-02-11 14:29:53] 2026-02-11 13:29:17,812 | INFO     | mean y: 2604301.515625
[2026-02-11 14:29:53] 2026-02-11 13:29:17,812 | INFO     | intersect: 29565042775.877914
[2026-02-11 14:29:53] 2026-02-11 13:29:17,812 | INFO     | chi2: 0.011834465170568234
[2026-02-11 14:29:53] 2026-02-11 13:29:17,812 | INFO     | current memory leak: -16.69 B/s (using 64 data points, chi2=0.01)
[2026-02-11 14:29:53] 2026-02-11 13:29:17,812 | INFO     | could have reported an average CPU frequency of 2595 MHz (6 samples)
[2026-02-11 14:29:53] 2026-02-11 13:29:17,812 | INFO     | ..............................
[2026-02-11 14:29:53] 2026-02-11 13:29:17,812 | INFO     | . Timing measurements:
[2026-02-11 14:29:53] 2026-02-11 13:29:17,813 | INFO     | . get job = 0 s
[2026-02-11 14:29:53] 2026-02-11 13:29:17,813 | INFO     | . initial setup = 2 s
[2026-02-11 14:29:53] 2026-02-11 13:29:17,813 | INFO     | . payload setup = 2 s
[2026-02-11 14:29:53] 2026-02-11 13:29:17,813 | INFO     | . stage-in = 0 s
[2026-02-11 14:29:53] 2026-02-11 13:29:17,813 | INFO     | . payload execution = 4273 s
[2026-02-11 14:29:53] 2026-02-11 13:29:17,813 | INFO     | . stage-out = 0 s
[2026-02-11 14:29:53] 2026-02-11 13:29:17,813 | INFO     | . log creation = 0 s
[2026-02-11 14:29:53] 2026-02-11 13:29:17,813 | INFO     | ..............................
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | 
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | job summary report
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | --------------------------------------------------
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | PanDA job id: 7010004500
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | task id: 48431096
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | errors: (none)
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | pilot state: finished 
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | transexitcode: 0
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | exeerrorcode: 0
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | exeerrordiag: 
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | exitcode: 0
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | exitmsg: OK
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | cpuconsumptiontime: 29130 s
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | nevents: 400
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | neventsw: 0
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | pid: 6455
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | pgrp: 6455
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | corecount: 8
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | event service: False
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | sizes: {0: 2282339, 11: 2282339, 4280: 2308583, 4281: 2317611, 4284: 2317667, 4286: 2317861}
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | --------------------------------------------------
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | 
[2026-02-11 14:29:53] 2026-02-11 13:29:18,359 | INFO     | executing command: ls -lF /tmp/job_11088143/atlas/pilot/slots/0
[2026-02-11 14:29:53] 2026-02-11 13:29:18,368 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | job 7010004500 has completed (purged errors)
[2026-02-11 14:29:53] 2026-02-11 13:29:18,369 | INFO     | overall cleanup function is called
[2026-02-11 14:29:53] 2026-02-11 13:29:19,375 | INFO     | --- collectZombieJob: --- 10, [6455]
[2026-02-11 14:29:53] 2026-02-11 13:29:19,375 | INFO     | zombie collector waiting for pid 6455
[2026-02-11 14:29:53] 2026-02-11 13:29:19,376 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-11 14:29:53] 2026-02-11 13:29:19,376 | INFO     | collected zombie processes
[2026-02-11 14:29:53] 2026-02-11 13:29:19,376 | INFO     | will attempt to kill all subprocesses of pid=6455
[2026-02-11 14:29:53] 2026-02-11 13:29:19,474 | INFO     | process IDs to be killed: [6455] (in reverse order)
[2026-02-11 14:29:53] 2026-02-11 13:29:19,509 | WARNING  | found no corresponding commands to process id(s)
[2026-02-11 14:29:53] 2026-02-11 13:29:19,509 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-11 14:29:53] 2026-02-11 13:29:19,512 | INFO     | did not find any defunct processes belonging to 6455
[2026-02-11 14:29:53] 2026-02-11 13:29:19,515 | INFO     | did not find any defunct processes belonging to 6455
[2026-02-11 14:29:53] 2026-02-11 13:29:19,516 | INFO     | ready for new job
[2026-02-11 14:29:53] 2026-02-11 13:29:19,516 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-11 14:29:53] 2026-02-11 13:29:19,516 | INFO     | **************************************
[2026-02-11 14:29:53] 2026-02-11 13:29:19,516 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-11 14:29:53] 2026-02-11 13:29:19,516 | INFO     | **************************************
[2026-02-11 14:29:53] 2026-02-11 13:29:19,516 | INFO     | 
[2026-02-11 14:29:53] 2026-02-11 13:29:19,531 | INFO     | architecture information:
[2026-02-11 14:29:53] 2026-02-11 13:29:19,531 | INFO     | executing command: cat /etc/os-release
[2026-02-11 14:29:53] 2026-02-11 13:29:19,537 | INFO     | cat /etc/os-release:
[2026-02-11 14:29:53] NAME="CentOS Linux"
[2026-02-11 14:29:53] VERSION="7 (Core)"
[2026-02-11 14:29:53] ID="centos"
[2026-02-11 14:29:53] ID_LIKE="rhel fedora"
[2026-02-11 14:29:53] VERSION_ID="7"
[2026-02-11 14:29:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-11 14:29:53] ANSI_COLOR="0;31"
[2026-02-11 14:29:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-11 14:29:53] HOME_URL="https://www.centos.org/"
[2026-02-11 14:29:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-11 14:29:53] 
[2026-02-11 14:29:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-11 14:29:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-11 14:29:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-11 14:29:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-11 14:29:53] 
[2026-02-11 14:29:53] 2026-02-11 13:29:19,537 | INFO     | **************************************
[2026-02-11 14:29:53] 2026-02-11 13:29:20,039 | INFO     | executing command: df -mP /tmp/job_11088143/atlas/pilot/slots/0
[2026-02-11 14:29:53] 2026-02-11 13:29:20,044 | INFO     | sufficient remaining disk space (221932158976 B)
[2026-02-11 14:29:53] 2026-02-11 13:29:20,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-11 14:29:53] 2026-02-11 13:29:20,045 | INFO     | current server update state: UPDATING_FINAL
[2026-02-11 14:29:53] 2026-02-11 13:29:20,045 | INFO     | update_server=False
[2026-02-11 14:29:53] 2026-02-11 13:29:20,045 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-11 14:29:53] 2026-02-11 13:29:20,045 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-11 14:29:53] 2026-02-11 13:29:20,045 | INFO     | aborting loop
[2026-02-11 14:29:53] 2026-02-11 13:29:20,242 | INFO     | all job control threads have been joined
[2026-02-11 14:29:53] 2026-02-11 13:29:20,470 | INFO     | all payload control threads have been joined
[2026-02-11 14:29:53] 2026-02-11 13:29:21,034 | INFO     | all data control threads have been joined
[2026-02-11 14:29:53] 2026-02-11 13:29:21,050 | INFO     | [job] retrieve thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:21,050 | INFO     | [job] job monitor thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:21,211 | INFO     | [payload] failed_post thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:21,247 | INFO     | [job] control thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:21,370 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-11 14:29:53] 2026-02-11 13:29:21,475 | INFO     | [payload] control thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:21,614 | INFO     | [payload] execute_payloads thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:21,713 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-11 14:29:53] 2026-02-11 13:29:21,969 | INFO     | [job] validate thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:22,008 | INFO     | [job] create_data_payload thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:22,039 | INFO     | [data] control thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:22,062 | INFO     | [payload] validate_pre thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:22,258 | INFO     | [payload] validate_post thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:22,299 | INFO     | [data] copytool_in thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:22,869 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-11 14:29:53] 2026-02-11 13:29:23,375 | INFO     | [data] copytool_out thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:23,874 | INFO     | [job] queue monitor thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:25,719 | INFO     | [data] queue_monitor thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:30,663 | INFO     | job.realtimelogging is not enabled
[2026-02-11 14:29:53] 2026-02-11 13:29:31,668 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-11 14:29:53] 2026-02-11 13:29:47,178 | INFO     | [monitor] cgroup control has ended
[2026-02-11 14:29:53] 2026-02-11 13:29:48,260 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-02-11 14:29:53] 2026-02-11 13:29:49,892 | INFO     | PID=1695 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-11 14:29:53] 2026-02-11 13:29:49,892 | INFO     | .. there are 4 such processes running
[2026-02-11 14:29:53] 2026-02-11 13:29:49,893 | INFO     | found 0 job(s) in 20 queues
[2026-02-11 14:29:53] 2026-02-11 13:29:49,893 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-11 14:29:53] 2026-02-11 13:29:49,893 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-11 14:29:53] 2026-02-11 13:29:49,893 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-11 14:29:53] 2026-02-11 13:29:49,893 | INFO     | [monitor] control thread has ended
[2026-02-11 14:29:53] 2026-02-11 13:29:53,285 | INFO     | all workflow threads have been joined
[2026-02-11 14:29:53] 2026-02-11 13:29:53,285 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-11 14:29:53] 2026-02-11 13:29:53,285 | INFO     | traces error code: 0
[2026-02-11 14:29:53] 2026-02-11 13:29:53,285 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-11 14:29:53] 2026-02-11 13:29:53,343 [wrapper] ==== pilot stdout END ====
[2026-02-11 14:29:53] 2026-02-11 13:29:53,344 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-11 14:29:53] 2026-02-11 13:29:53,345 [wrapper] pilotpid: 1695
[2026-02-11 14:29:53] 2026-02-11 13:29:53,346 [wrapper] Pilot exit status: 0
[2026-02-11 14:29:53] 2026-02-11 13:29:53,351 [wrapper] pandaids: 7010004500
[2026-02-11 14:29:53] 2026-02-11 13:29:53,372 [wrapper] cleanup supervisor_pilot 30576 1696
[2026-02-11 14:29:53] 2026-02-11 13:29:53,373 [wrapper] Test setup, not cleaning
[2026-02-11 14:29:53] 2026-02-11 13:29:53,374 [wrapper] apfmon messages muted
[2026-02-11 14:29:53] 2026-02-11 13:29:53,375 [wrapper] ==== wrapper stdout END ====
[2026-02-11 14:29:53] 2026-02-11 13:29:53,376 [wrapper] ==== wrapper stderr END ====
[2026-02-11 14:29:53]  *** Error codes and diagnostics ***
[2026-02-11 14:29:53]     "exeErrorCode": 0,
[2026-02-11 14:29:53]     "exeErrorDiag": "",
[2026-02-11 14:29:53]     "pilotErrorCode": 0,
[2026-02-11 14:29:53]     "pilotErrorDiag": "",
[2026-02-11 14:29:53]  *** Listing of results directory ***
[2026-02-11 14:29:53] total 949208
[2026-02-11 14:29:53] -rwx------ 1 mf493845 unix-user     36322 Feb 10 06:22 runpilot2-wrapper.sh
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user      5111 Feb 10 06:25 queuedata.json
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user    584627 Feb 10 06:25 pilot3.tar.gz
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user       100 Feb 11 11:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-11 14:29:53] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb 11 11:12 run_atlas
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user       105 Feb 11 11:12 job.xml
[2026-02-11 14:29:53] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 11 13:17 start_atlas.sh
[2026-02-11 14:29:53] drwxrwx--x 2 mf493845 unix-user       100 Feb 11 13:17 shared
[2026-02-11 14:29:53] -rw-r--r-- 2 mf493845 unix-user    597963 Feb 11 13:17 input.tar.gz
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user      6389 Feb 11 13:17 init_data.xml
[2026-02-11 14:29:53] -rw-r--r-- 2 mf493845 unix-user 685963969 Feb 11 13:17 EVNT.48431094._000483.pool.root.1
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user         0 Feb 11 13:17 boinc_setup_complete
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user      8192 Feb 11 13:17 boinc_mmap_file
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user         0 Feb 11 13:17 boinc_lockfile
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user      2555 Feb 11 13:17 pandaJob.out
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user   1009239 Feb 11 13:17 agis_schedconf.cvmfs.json
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user   1512955 Feb 11 13:17 agis_ddmendpoints.agis.ALL.json
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user       416 Feb 11 13:17 workernode_map.json
[2026-02-11 14:29:53] drwx------ 5 mf493845 unix-user       440 Feb 11 13:17 pilot3
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user 280144500 Feb 11 14:28 HITS.48431096._021941.pool.root.1
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user      1031 Feb 11 14:29 memory_monitor_summary.json
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user    327573 Feb 11 14:29 log.48431096._021941.job.log.tgz.1
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user      6310 Feb 11 14:29 heartbeat.json
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user        95 Feb 11 14:29 pilot_heartbeat.json
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user      4902 Feb 11 14:29 pilotlog.txt
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user    656616 Feb 11 14:29 log.48431096._021941.job.log.1
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user       357 Feb 11 14:29 output.list
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user       620 Feb 11 14:29 runtime_log
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user   1003520 Feb 11 14:29 result.tar.gz
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user      9219 Feb 11 14:29 runtime_log.err
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user       644 Feb 11 14:29 HMXNDmZNv98n9Rq4apOajLDm4fhM0noT9bVooX4SDmYqgKDm93bSim.diag
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user     22071 Feb 11 14:29 stderr.txt
[2026-02-11 14:29:53] HITS file was successfully produced:
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user 280144500 Feb 11 14:28 shared/HITS.pool.root.1
[2026-02-11 14:29:53]  *** Contents of shared directory: ***
[2026-02-11 14:29:53] total 945048
[2026-02-11 14:29:53] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 11 13:17 start_atlas.sh
[2026-02-11 14:29:53] -rw-r--r-- 2 mf493845 unix-user    597963 Feb 11 13:17 input.tar.gz
[2026-02-11 14:29:53] -rw-r--r-- 2 mf493845 unix-user 685963969 Feb 11 13:17 ATLAS.root_0
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user 280144500 Feb 11 14:28 HITS.pool.root.1
[2026-02-11 14:29:53] -rw------- 1 mf493845 unix-user   1003520 Feb 11 14:29 result.tar.gz
14:29:54 (30158): run_atlas exited; CPU time 29188.218169
14:29:54 (30158): called boinc_finish(0)

</stderr_txt>
]]>

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