Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:41:02 (3636922): wrapper (7.7.26015): starting
19:41:02 (3636922): wrapper: running run_atlas (--nthreads 2)
[2026-02-11 19:41:02] Arguments: --nthreads 2
[2026-02-11 19:41:02] Threads: 2
[2026-02-11 19:41:02] Checking for CVMFS
[2026-02-11 19:41:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-11 19:41:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-11 19:41:03] Running cvmfs_config stat atlas.cern.ch
[2026-02-11 19:41:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-11 19:41:03] 2.9.2.0 2908847 7774 62980 156125 2 50 23119522 36864000 0 130560 0 2171381 99.977 264269 2751 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-11 19:41:03] CVMFS is ok
[2026-02-11 19:41:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-11 19:41:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-11 19:41:03] Further information can be found at the LHC@home message board.
[2026-02-11 19:41:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-11 19:41:03] Checking for apptainer binary...
[2026-02-11 19:41:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-11 19:41:03] Running /usr/bin/apptainer --version
[2026-02-11 19:41:03] apptainer version 1.4.1-1.1
[2026-02-11 19:41:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-11 19:41:03] madmaxA277a
[2026-02-11 19:41:03] apptainer works
[2026-02-11 19:41:03] Set ATHENA_PROC_NUMBER=2
[2026-02-11 19:41:03] Set ATHENA_CORE_NUMBER=2
[2026-02-11 19:41:03] Starting ATLAS job with PandaID=6995182654
[2026-02-11 19:41:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-11 21:43:40]  *** The last 200 lines of the pilot log: ***
[2026-02-11 21:43:40] 2026-02-11 20:42:40,671 | INFO     | zombie collector waiting for pid 3645354
[2026-02-11 21:43:40] 2026-02-11 20:42:40,672 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-11 21:43:40] 2026-02-11 20:42:40,672 | INFO     | collected zombie processes
[2026-02-11 21:43:40] 2026-02-11 20:42:40,672 | INFO     | will attempt to kill all subprocesses of pid=3645354
[2026-02-11 21:43:40] 2026-02-11 20:42:40,702 | INFO     | process IDs to be killed: [3645354] (in reverse order)
[2026-02-11 21:43:40] 2026-02-11 20:42:40,722 | WARNING  | found no corresponding commands to process id(s)
[2026-02-11 21:43:40] 2026-02-11 20:42:40,722 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-11 21:43:40] 2026-02-11 20:42:40,723 | INFO     | did not find any defunct processes belonging to 3645354
[2026-02-11 21:43:40] 2026-02-11 20:42:40,723 | INFO     | did not find any defunct processes belonging to 3645354
[2026-02-11 21:43:40] 2026-02-11 20:42:40,723 | INFO     | ready for new job
[2026-02-11 21:43:40] 2026-02-11 20:42:40,723 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-11 21:43:40] 2026-02-11 20:42:40,724 | INFO     | **************************************
[2026-02-11 21:43:40] 2026-02-11 20:42:40,724 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-11 21:43:40] 2026-02-11 20:42:40,724 | INFO     | **************************************
[2026-02-11 21:43:40] 2026-02-11 20:42:40,724 | INFO     | 
[2026-02-11 21:43:40] 2026-02-11 20:42:40,724 | INFO     | architecture information:
[2026-02-11 21:43:40] 2026-02-11 20:42:40,724 | INFO     | executing command: cat /etc/os-release
[2026-02-11 21:43:40] 2026-02-11 20:42:40,732 | INFO     | cat /etc/os-release:
[2026-02-11 21:43:40] NAME="CentOS Linux"
[2026-02-11 21:43:40] VERSION="7 (Core)"
[2026-02-11 21:43:40] ID="centos"
[2026-02-11 21:43:40] ID_LIKE="rhel fedora"
[2026-02-11 21:43:40] VERSION_ID="7"
[2026-02-11 21:43:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-11 21:43:40] ANSI_COLOR="0;31"
[2026-02-11 21:43:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-11 21:43:40] HOME_URL="https://www.centos.org/"
[2026-02-11 21:43:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-11 21:43:40] 
[2026-02-11 21:43:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-11 21:43:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-11 21:43:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-11 21:43:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-11 21:43:40] 
[2026-02-11 21:43:40] 2026-02-11 20:42:40,732 | INFO     | **************************************
[2026-02-11 21:43:40] 2026-02-11 20:42:41,235 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-11 21:43:40] 2026-02-11 20:42:41,248 | INFO     | sufficient remaining disk space (492860080128 B)
[2026-02-11 21:43:40] 2026-02-11 20:42:41,248 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-11 21:43:40] 2026-02-11 20:42:41,248 | INFO     | current server update state: UPDATING_FINAL
[2026-02-11 21:43:40] 2026-02-11 20:42:41,248 | INFO     | update_server=False
[2026-02-11 21:43:40] 2026-02-11 20:42:41,248 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-11 21:43:40] 2026-02-11 20:42:41,248 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-11 21:43:40] 2026-02-11 20:42:41,248 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-11 21:43:40] 2026-02-11 20:42:41,248 | INFO     | found 0 job(s) in 20 queues
[2026-02-11 21:43:40] 2026-02-11 20:42:41,248 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-11 21:43:40] 2026-02-11 20:42:41,248 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-11 21:43:40] 2026-02-11 20:42:41,294 | INFO     | all data control threads have been joined
[2026-02-11 21:43:40] 2026-02-11 20:42:41,337 | INFO     | all payload control threads have been joined
[2026-02-11 21:43:40] 2026-02-11 20:42:41,419 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-11 21:43:40] 2026-02-11 20:42:42,176 | WARNING  | process 3645354 can no longer be monitored (due to stat problems) - aborting
[2026-02-11 21:43:40] 2026-02-11 20:42:42,197 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-11 21:43:40] 2026-02-11 20:42:42,224 | INFO     | number of running child processes to parent process 3645354: 1
[2026-02-11 21:43:40] 2026-02-11 20:42:42,224 | INFO     | maximum number of monitored processes: 6
[2026-02-11 21:43:40] 2026-02-11 20:42:42,224 | INFO     | aborting job monitoring since job object (job id=6995182654) has expired
[2026-02-11 21:43:40] 2026-02-11 20:42:42,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-11 21:43:40] 2026-02-11 20:42:42,224 | INFO     | will abort loop
[2026-02-11 21:43:40] 2026-02-11 20:42:42,252 | INFO     | [job] retrieve thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:42,253 | INFO     | [job] queue monitor thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:42,300 | INFO     | [data] control thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:42,304 | INFO     | all job control threads have been joined
[2026-02-11 21:43:40] 2026-02-11 20:42:42,343 | INFO     | [payload] control thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:42,461 | INFO     | job.realtimelogging is not enabled
[2026-02-11 21:43:40] 2026-02-11 20:42:42,463 | INFO     | [payload] failed_post thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:42,613 | INFO     | [payload] execute_payloads thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:43,040 | INFO     | [payload] validate_post thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:43,227 | INFO     | [job] job monitor thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:43,227 | INFO     | [job] validate thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:43,238 | INFO     | [payload] validate_pre thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:43,310 | INFO     | [job] control thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:43,348 | INFO     | [job] create_data_payload thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:43,426 | INFO     | [data] copytool_out thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:43,466 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:43,489 | INFO     | [data] copytool_in thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:42:44,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-11 21:43:40] 2026-02-11 20:42:48,244 | INFO     | [data] queue_monitor thread has finished
[2026-02-11 21:43:40] 2026-02-11 20:43:33,818 | INFO     | [monitor] cgroup control has ended
[2026-02-11 21:43:40] 2026-02-11 20:43:35,260 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140067271341888)>', '<ExcThread(monitor, started 140066777188096)>']
[2026-02-11 21:43:40] 2026-02-11 20:43:35,525 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-11 21:43:40] 2026-02-11 20:43:35,525 | INFO     | [monitor] control thread has ended
[2026-02-11 21:43:40] 2026-02-11 20:43:40,286 | INFO     | all workflow threads have been joined
[2026-02-11 21:43:40] 2026-02-11 20:43:40,286 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-11 21:43:40] 2026-02-11 20:43:40,286 | INFO     | traces error code: 0
[2026-02-11 21:43:40] 2026-02-11 20:43:40,287 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-11 21:43:40] 2026-02-11 20:43:40,328 [wrapper] ==== pilot stdout END ====
[2026-02-11 21:43:40] 2026-02-11 20:43:40,330 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-11 21:43:40] 2026-02-11 20:43:40,332 [wrapper] pilotpid: 3640947
[2026-02-11 21:43:40] 2026-02-11 20:43:40,334 [wrapper] Pilot exit status: 0
[2026-02-11 21:43:40] 2026-02-11 20:43:40,341 [wrapper] pandaids: 6995182654
[2026-02-11 21:43:40] 2026-02-11 20:43:40,353 [wrapper] cleanup supervisor_pilot 3650357 3640948
[2026-02-11 21:43:40] 2026-02-11 20:43:40,355 [wrapper] Test setup, not cleaning
[2026-02-11 21:43:40] 2026-02-11 20:43:40,357 [wrapper] apfmon messages muted
[2026-02-11 21:43:40] 2026-02-11 20:43:40,359 [wrapper] ==== wrapper stdout END ====
[2026-02-11 21:43:40] 2026-02-11 20:43:40,360 [wrapper] ==== wrapper stderr END ====
[2026-02-11 21:43:40]  *** Error codes and diagnostics ***
[2026-02-11 21:43:40]     "exeErrorCode": 0,
[2026-02-11 21:43:40]     "exeErrorDiag": "",
[2026-02-11 21:43:40]     "pilotErrorCode": 0,
[2026-02-11 21:43:40]     "pilotErrorDiag": "",
[2026-02-11 21:43:40]  *** Listing of results directory ***
[2026-02-11 21:43:40] total 667964
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc    584422 Feb  4 04:08 pilot3.tar.gz
[2026-02-11 21:43:40] -rwx------ 1 boinc boinc     36322 Feb  4 04:09 runpilot2-wrapper.sh
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc      5111 Feb  4 04:09 queuedata.json
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc       100 Feb 11 19:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-11 21:43:40] -rwxr-xr-x 1 boinc boinc      7986 Feb 11 19:41 run_atlas
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc       105 Feb 11 19:41 job.xml
[2026-02-11 21:43:40] -rw-r--r-- 2 boinc boinc 496243238 Feb 11 19:41 EVNT.48318008._000079.pool.root.1
[2026-02-11 21:43:40] drwxrwx--x 2 boinc boinc      4096 Feb 11 19:41 shared
[2026-02-11 21:43:40] -rw-r--r-- 2 boinc boinc    597764 Feb 11 19:41 input.tar.gz
[2026-02-11 21:43:40] -rw-r--r-- 2 boinc boinc     15845 Feb 11 19:41 start_atlas.sh
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc         0 Feb 11 19:41 boinc_setup_complete
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc      6210 Feb 11 19:41 init_data.xml
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc         0 Feb 11 19:41 boinc_lockfile
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc      2525 Feb 11 19:41 pandaJob.out
[2026-02-11 21:43:40] -rw------- 1 boinc boinc   1008152 Feb 11 19:41 agis_schedconf.cvmfs.json
[2026-02-11 21:43:40] -rw------- 1 boinc boinc   1512955 Feb 11 19:41 agis_ddmendpoints.agis.ALL.json
[2026-02-11 21:43:40] -rw------- 1 boinc boinc       421 Feb 11 19:41 workernode_map.json
[2026-02-11 21:43:40] drwx------ 5 boinc boinc      4096 Feb 11 19:41 pilot3
[2026-02-11 21:43:40] -rw------- 1 boinc boinc        95 Feb 11 21:41 pilot_heartbeat.json
[2026-02-11 21:43:40] -rw------- 1 boinc boinc 181173253 Feb 11 21:42 HITS.48318010._008759.pool.root.1
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc       530 Feb 11 21:42 boinc_task_state.xml
[2026-02-11 21:43:40] -rw------- 1 boinc boinc      1018 Feb 11 21:42 memory_monitor_summary.json
[2026-02-11 21:43:40] -rw------- 1 boinc boinc    276677 Feb 11 21:42 log.48318010._008759.job.log.tgz.1
[2026-02-11 21:43:40] -rw------- 1 boinc boinc      6306 Feb 11 21:42 heartbeat.json
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc      8192 Feb 11 21:43 boinc_mmap_file
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc        27 Feb 11 21:43 wrapper_checkpoint.txt
[2026-02-11 21:43:40] -rw------- 1 boinc boinc      5148 Feb 11 21:43 pilotlog.txt
[2026-02-11 21:43:40] -rw------- 1 boinc boinc   1048184 Feb 11 21:43 log.48318010._008759.job.log.1
[2026-02-11 21:43:40] -rw------- 1 boinc boinc       357 Feb 11 21:43 output.list
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc       620 Feb 11 21:43 runtime_log
[2026-02-11 21:43:40] -rw------- 1 boinc boinc   1341440 Feb 11 21:43 result.tar.gz
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc      8921 Feb 11 21:43 runtime_log.err
[2026-02-11 21:43:40] -rw------- 1 boinc boinc       662 Feb 11 21:43 3vdKDmWRi78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmIZWKDmeJ3bum.diag
[2026-02-11 21:43:40] -rw-r--r-- 1 boinc boinc     11166 Feb 11 21:43 stderr.txt
[2026-02-11 21:43:40] HITS file was successfully produced:
[2026-02-11 21:43:40] -rw------- 1 boinc boinc 181173253 Feb 11 21:42 shared/HITS.pool.root.1
[2026-02-11 21:43:40]  *** Contents of shared directory: ***
[2026-02-11 21:43:40] total 663464
[2026-02-11 21:43:40] -rw-r--r-- 2 boinc boinc 496243238 Feb 11 19:41 ATLAS.root_0
[2026-02-11 21:43:40] -rw-r--r-- 2 boinc boinc    597764 Feb 11 19:41 input.tar.gz
[2026-02-11 21:43:40] -rw-r--r-- 2 boinc boinc     15845 Feb 11 19:41 start_atlas.sh
[2026-02-11 21:43:40] -rw------- 1 boinc boinc 181173253 Feb 11 21:42 HITS.pool.root.1
[2026-02-11 21:43:40] -rw------- 1 boinc boinc   1341440 Feb 11 21:43 result.tar.gz
21:43:41 (3636922): run_atlas exited; CPU time 14105.356749
21:43:41 (3636922): called boinc_finish(0)

</stderr_txt>
]]>

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