Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:09:12 (1896): wrapper (7.7.26015): starting
13:09:12 (1896): wrapper: running run_atlas (--nthreads 8)
[2026-02-11 13:09:12] Arguments: --nthreads 8
[2026-02-11 13:09:12] Threads: 8
[2026-02-11 13:09:12] Checking for CVMFS
[2026-02-11 13:09:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-11 13:09:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-11 13:09:12] Running cvmfs_config stat atlas.cern.ch
[2026-02-11 13:09:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-11 13:09:12] 2.11.0.0 7902 176519 96444 156114 3 188 3976819 4096000 917 130560 3 9369551 99.406 11044814 467 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-11 13:09:12] CVMFS is ok
[2026-02-11 13:09:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-11 13:09:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-11 13:09:12] Further information can be found at the LHC@home message board.
[2026-02-11 13:09:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-11 13:09:12] Checking for apptainer binary...
[2026-02-11 13:09:12] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-11 13:09:12] apptainer is not installed, using version from CVMFS
[2026-02-11 13:09:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-11 13:09:12] WARNING: Environment variable TMPDIR already has value [/tmp/job_11087996/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node093
[2026-02-11 13:09:12] apptainer works
[2026-02-11 13:09:12] Set ATHENA_PROC_NUMBER=8
[2026-02-11 13:09:12] Set ATHENA_CORE_NUMBER=8
[2026-02-11 13:09:12] Starting ATLAS job with PandaID=7011332703
[2026-02-11 13:09:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11087996/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-11 14:18:31]  *** The last 200 lines of the pilot log: ***
[2026-02-11 14:18:31]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-11 14:18:31]  is_altstaged=None
[2026-02-11 14:18:31]  is_tar=False
[2026-02-11 14:18:31]  lfn=log.48431096._026773.job.log.tgz.1
[2026-02-11 14:18:31]  mtime=0
[2026-02-11 14:18:31]  protocol_id=None
[2026-02-11 14:18:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-11 14:18:31]  replicas=None
[2026-02-11 14:18:31]  scope=mc23_13p6TeV
[2026-02-11 14:18:31]  status=None
[2026-02-11 14:18:31]  status_code=0
[2026-02-11 14:18:31]  storage_token=
[2026-02-11 14:18:31]  surl=/tmp/job_11087996/atlas/pilot/slots/0/PanDA_Pilot-7011332703/log.48431096._026773.job.log.tgz.1
[2026-02-11 14:18:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/18/log.48431096._026773.job.log.tgz.1
[2026-02-11 14:18:31]  workdir=None
[2026-02-11 14:18:31] ]
[2026-02-11 14:18:31] 2026-02-11 13:17:24,953 | INFO     | transferring file log.48431096._026773.job.log.tgz.1 from /tmp/job_11087996/atlas/pilot/slots/0/PanDA_Pilot-7011332703/log.48431096._026773.job.log.tgz.1 to /tmp/j
[2026-02-11 14:18:31] 2026-02-11 13:17:24,953 | INFO     | executing command: /usr/bin/env mv /tmp/job_11087996/atlas/pilot/slots/0/PanDA_Pilot-7011332703/log.48431096._026773.job.log.tgz.1 /tmp/job_11087996/atlas/pilot/sl
[2026-02-11 14:18:31] 2026-02-11 13:17:24,961 | INFO     | adding to output.list: log.48431096._026773.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/18/log.48431096._026773.job.log.tg
[2026-02-11 14:18:31] 2026-02-11 13:17:24,961 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-11 14:18:31] 2026-02-11 13:17:24,961 | INFO     | summary of transferred files:
[2026-02-11 14:18:31] 2026-02-11 13:17:24,961 | INFO     |  -- lfn=log.48431096._026773.job.log.tgz.1, status_code=0, status=transferred
[2026-02-11 14:18:31] 2026-02-11 13:17:24,961 | INFO     | stage-out finished correctly
[2026-02-11 14:18:31] 2026-02-11 13:17:25,533 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-11 14:18:31] 2026-02-11 13:17:26,371 | INFO     | time since job start (4087s) is within the limit (349056.0s)
[2026-02-11 14:18:31] 2026-02-11 13:17:27,252 | INFO     | job 7011332703 has state=finished
[2026-02-11 14:18:31] 2026-02-11 13:17:27,252 | INFO     | preparing for final server update for job 7011332703 in state='finished'
[2026-02-11 14:18:31] 2026-02-11 13:17:27,252 | INFO     | reading metadata from: /tmp/job_11087996/atlas/pilot/slots/0/PanDA_Pilot-7011332703/jobReport.json
[2026-02-11 14:18:31] 2026-02-11 13:17:27,253 | INFO     | added worker_node to metadata from /tmp/job_11087996/atlas/pilot/slots/0/workernode_map.json
[2026-02-11 14:18:31] 2026-02-11 13:17:27,254 | INFO     | this job has now completed (state=finished)
[2026-02-11 14:18:31] 2026-02-11 13:17:27,254 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-11 14:18:31] 2026-02-11 13:17:27,254 | INFO     | log transfer has been attempted: DONE
[2026-02-11 14:18:31] 2026-02-11 13:17:27,254 | INFO     | job 7011332703 has finished - writing final server update
[2026-02-11 14:18:31] 2026-02-11 13:17:27,254 | INFO     | total number of processed events: 400 (read)
[2026-02-11 14:18:31] 2026-02-11 13:17:27,272 | INFO     | using path: /tmp/job_11087996/atlas/pilot/slots/0/PanDA_Pilot-7011332703/memory_monitor_summary.json (trf name=prmon)
[2026-02-11 14:18:31] 2026-02-11 13:17:27,272 | INFO     | extracted standard info from prmon json
[2026-02-11 14:18:31] 2026-02-11 13:17:27,272 | INFO     | extracted standard memory fields from prmon json
[2026-02-11 14:18:31] 2026-02-11 13:17:27,272 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-11 14:18:31] 2026-02-11 13:17:27,272 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-11 14:18:31] 2026-02-11 13:17:27,273 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-11 14:18:31] 2026-02-11 13:17:27,273 | INFO     | fitting pss+swap vs Time
[2026-02-11 14:18:31] 2026-02-11 13:17:27,273 | INFO     | sum of square deviations: 66959395.0
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | sum of deviations: -2566407951.4999995
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | mean x: 1770813879.5
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | mean y: 2640001.3833333333
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | intersect: 67874083896.229774
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | chi2: 0.00989735550595343
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | current memory leak: -38.33 B/s (using 60 data points, chi2=0.01)
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | could have reported an average CPU frequency of 2488 MHz (6 samples)
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | ..............................
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | . Timing measurements:
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | . get job = 0 s
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | . initial setup = 2 s
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | . payload setup = 2 s
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | . stage-in = 0 s
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | . payload execution = 4068 s
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | . stage-out = 0 s
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | . log creation = 0 s
[2026-02-11 14:18:31] 2026-02-11 13:17:27,274 | INFO     | ..............................
[2026-02-11 14:18:31] 2026-02-11 13:17:27,320 | INFO     | 
[2026-02-11 14:18:31] 2026-02-11 13:17:27,320 | INFO     | job summary report
[2026-02-11 14:18:31] 2026-02-11 13:17:27,320 | INFO     | --------------------------------------------------
[2026-02-11 14:18:31] 2026-02-11 13:17:27,320 | INFO     | PanDA job id: 7011332703
[2026-02-11 14:18:31] 2026-02-11 13:17:27,320 | INFO     | task id: 48431096
[2026-02-11 14:18:31] 2026-02-11 13:17:27,320 | INFO     | errors: (none)
[2026-02-11 14:18:31] 2026-02-11 13:17:27,320 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-11 14:18:31] 2026-02-11 13:17:27,320 | INFO     | pilot state: finished 
[2026-02-11 14:18:31] 2026-02-11 13:17:27,320 | INFO     | transexitcode: 0
[2026-02-11 14:18:31] 2026-02-11 13:17:27,320 | INFO     | exeerrorcode: 0
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | exeerrordiag: 
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | exitcode: 0
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | exitmsg: OK
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | cpuconsumptiontime: 30159 s
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | nevents: 400
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | neventsw: 0
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | pid: 10395
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | pgrp: 10395
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | corecount: 8
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | event service: False
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | sizes: {0: 2281852, 1: 2282367, 11: 2282367, 4074: 2308432, 4075: 2317516, 4077: 2317654}
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | --------------------------------------------------
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | 
[2026-02-11 14:18:31] 2026-02-11 13:17:27,321 | INFO     | executing command: ls -lF /tmp/job_11087996/atlas/pilot/slots/0
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,330 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,331 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,331 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-11 14:18:31] 2026-02-11 13:17:27,331 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,331 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-11 14:18:31] 2026-02-11 13:17:27,331 | INFO     | job 7011332703 has completed (purged errors)
[2026-02-11 14:18:31] 2026-02-11 13:17:27,331 | INFO     | overall cleanup function is called
[2026-02-11 14:18:31] 2026-02-11 13:17:28,336 | INFO     | --- collectZombieJob: --- 10, [10395]
[2026-02-11 14:18:31] 2026-02-11 13:17:28,337 | INFO     | zombie collector waiting for pid 10395
[2026-02-11 14:18:31] 2026-02-11 13:17:28,337 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-11 14:18:31] 2026-02-11 13:17:28,337 | INFO     | collected zombie processes
[2026-02-11 14:18:31] 2026-02-11 13:17:28,337 | INFO     | will attempt to kill all subprocesses of pid=10395
[2026-02-11 14:18:31] 2026-02-11 13:17:28,430 | INFO     | process IDs to be killed: [10395] (in reverse order)
[2026-02-11 14:18:31] 2026-02-11 13:17:28,463 | WARNING  | found no corresponding commands to process id(s)
[2026-02-11 14:18:31] 2026-02-11 13:17:28,463 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-11 14:18:31] 2026-02-11 13:17:28,467 | INFO     | did not find any defunct processes belonging to 10395
[2026-02-11 14:18:31] 2026-02-11 13:17:28,470 | INFO     | did not find any defunct processes belonging to 10395
[2026-02-11 14:18:31] 2026-02-11 13:17:28,470 | INFO     | ready for new job
[2026-02-11 14:18:31] 2026-02-11 13:17:28,470 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-11 14:18:31] 2026-02-11 13:17:28,470 | INFO     | **************************************
[2026-02-11 14:18:31] 2026-02-11 13:17:28,471 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-11 14:18:31] 2026-02-11 13:17:28,471 | INFO     | **************************************
[2026-02-11 14:18:31] 2026-02-11 13:17:28,471 | INFO     | 
[2026-02-11 14:18:31] 2026-02-11 13:17:28,484 | INFO     | architecture information:
[2026-02-11 14:18:31] 2026-02-11 13:17:28,484 | INFO     | executing command: cat /etc/os-release
[2026-02-11 14:18:31] 2026-02-11 13:17:28,491 | INFO     | cat /etc/os-release:
[2026-02-11 14:18:31] NAME="CentOS Linux"
[2026-02-11 14:18:31] VERSION="7 (Core)"
[2026-02-11 14:18:31] ID="centos"
[2026-02-11 14:18:31] ID_LIKE="rhel fedora"
[2026-02-11 14:18:31] VERSION_ID="7"
[2026-02-11 14:18:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-11 14:18:31] ANSI_COLOR="0;31"
[2026-02-11 14:18:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-11 14:18:31] HOME_URL="https://www.centos.org/"
[2026-02-11 14:18:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-11 14:18:31] 
[2026-02-11 14:18:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-11 14:18:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-11 14:18:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-11 14:18:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-11 14:18:31] 
[2026-02-11 14:18:31] 2026-02-11 13:17:28,491 | INFO     | **************************************
[2026-02-11 14:18:31] 2026-02-11 13:17:28,994 | INFO     | executing command: df -mP /tmp/job_11087996/atlas/pilot/slots/0
[2026-02-11 14:18:31] 2026-02-11 13:17:29,001 | INFO     | sufficient remaining disk space (223909773312 B)
[2026-02-11 14:18:31] 2026-02-11 13:17:29,001 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-11 14:18:31] 2026-02-11 13:17:29,001 | INFO     | current server update state: UPDATING_FINAL
[2026-02-11 14:18:31] 2026-02-11 13:17:29,001 | INFO     | update_server=False
[2026-02-11 14:18:31] 2026-02-11 13:17:29,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-11 14:18:31] 2026-02-11 13:17:29,001 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-11 14:18:31] 2026-02-11 13:17:29,001 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-11 14:18:31] 2026-02-11 13:17:29,320 | WARNING  | process 10395 can no longer be monitored (due to stat problems) - aborting
[2026-02-11 14:18:31] 2026-02-11 13:17:29,396 | INFO     | using path: /tmp/job_11087996/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-11 14:18:31] 2026-02-11 13:17:29,485 | INFO     | number of running child processes to parent process 10395: 1
[2026-02-11 14:18:31] 2026-02-11 13:17:29,486 | INFO     | maximum number of monitored processes: 6
[2026-02-11 14:18:31] 2026-02-11 13:17:29,486 | INFO     | aborting job monitoring since job object (job id=7011332703) has expired
[2026-02-11 14:18:31] 2026-02-11 13:17:29,486 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-11 14:18:31] 2026-02-11 13:17:29,486 | INFO     | will abort loop
[2026-02-11 14:18:31] 2026-02-11 13:17:29,498 | INFO     | all data control threads have been joined
[2026-02-11 14:18:31] 2026-02-11 13:17:30,006 | INFO     | [job] retrieve thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:30,007 | INFO     | [job] queue monitor thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:30,066 | INFO     | all payload control threads have been joined
[2026-02-11 14:18:31] 2026-02-11 13:17:30,342 | INFO     | [payload] validate_post thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:30,469 | INFO     | all job control threads have been joined
[2026-02-11 14:18:31] 2026-02-11 13:17:30,491 | INFO     | [job] job monitor thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:30,504 | INFO     | [data] control thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:30,722 | INFO     | [job] create_data_payload thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:30,758 | INFO     | [job] validate thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:30,810 | INFO     | [payload] failed_post thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:31,006 | INFO     | [data] copytool_out thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:31,030 | INFO     | [payload] validate_pre thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:31,072 | INFO     | [payload] control thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:31,248 | INFO     | [data] copytool_in thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:31,474 | INFO     | [job] control thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:31,503 | INFO     | [payload] execute_payloads thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:31,584 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-11 14:18:31] 2026-02-11 13:17:35,589 | INFO     | [data] queue_monitor thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:39,066 | INFO     | job.realtimelogging is not enabled
[2026-02-11 14:18:31] 2026-02-11 13:17:40,071 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-11 14:18:31] 2026-02-11 13:17:59,551 | INFO     | PID=5677 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-11 14:18:31] 2026-02-11 13:17:59,551 | INFO     | .. there are 2 such processes running
[2026-02-11 14:18:31] 2026-02-11 13:17:59,551 | INFO     | found 0 job(s) in 20 queues
[2026-02-11 14:18:31] 2026-02-11 13:17:59,551 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-11 14:18:31] 2026-02-11 13:17:59,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-11 14:18:31] 2026-02-11 13:18:25,554 | INFO     | [monitor] cgroup control has ended
[2026-02-11 14:18:31] 2026-02-11 13:18:26,559 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456054785792)>']
[2026-02-11 14:18:31] 2026-02-11 13:18:26,685 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-11 14:18:31] 2026-02-11 13:18:26,685 | INFO     | [monitor] control thread has ended
[2026-02-11 14:18:31] 2026-02-11 13:18:31,584 | INFO     | all workflow threads have been joined
[2026-02-11 14:18:31] 2026-02-11 13:18:31,584 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-11 14:18:31] 2026-02-11 13:18:31,584 | INFO     | traces error code: 0
[2026-02-11 14:18:31] 2026-02-11 13:18:31,585 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-11 14:18:31] 2026-02-11 13:18:31,638 [wrapper] ==== pilot stdout END ====
[2026-02-11 14:18:31] 2026-02-11 13:18:31,639 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-11 14:18:31] 2026-02-11 13:18:31,641 [wrapper] pilotpid: 5677
[2026-02-11 14:18:31] 2026-02-11 13:18:31,642 [wrapper] Pilot exit status: 0
[2026-02-11 14:18:31] 2026-02-11 13:18:31,646 [wrapper] pandaids: 7011332703
[2026-02-11 14:18:31] 2026-02-11 13:18:31,668 [wrapper] cleanup supervisor_pilot  9498 5678
[2026-02-11 14:18:31] 2026-02-11 13:18:31,669 [wrapper] Test setup, not cleaning
[2026-02-11 14:18:31] 2026-02-11 13:18:31,670 [wrapper] apfmon messages muted
[2026-02-11 14:18:31] 2026-02-11 13:18:31,671 [wrapper] ==== wrapper stdout END ====
[2026-02-11 14:18:31] 2026-02-11 13:18:31,672 [wrapper] ==== wrapper stderr END ====
[2026-02-11 14:18:31]  *** Error codes and diagnostics ***
[2026-02-11 14:18:31]     "exeErrorCode": 0,
[2026-02-11 14:18:31]     "exeErrorDiag": "",
[2026-02-11 14:18:31]     "pilotErrorCode": 0,
[2026-02-11 14:18:31]     "pilotErrorDiag": "",
[2026-02-11 14:18:31]  *** Listing of results directory ***
[2026-02-11 14:18:31] total 946160
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user      5111 Feb 11 02:48 queuedata.json
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user    584627 Feb 11 02:48 pilot3.tar.gz
[2026-02-11 14:18:31] -rwx------ 1 mf493845 unix-user     36322 Feb 11 02:48 runpilot2-wrapper.sh
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user       100 Feb 11 10:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-11 14:18:31] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb 11 10:56 run_atlas
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user       105 Feb 11 10:56 job.xml
[2026-02-11 14:18:31] -rw-r--r-- 2 mf493845 unix-user 677063971 Feb 11 13:09 EVNT.48431094._000622.pool.root.1
[2026-02-11 14:18:31] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 11 13:09 start_atlas.sh
[2026-02-11 14:18:31] drwxrwx--x 2 mf493845 unix-user       100 Feb 11 13:09 shared
[2026-02-11 14:18:31] -rw-r--r-- 2 mf493845 unix-user    597946 Feb 11 13:09 input.tar.gz
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user      6390 Feb 11 13:09 init_data.xml
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user         0 Feb 11 13:09 boinc_setup_complete
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user      8192 Feb 11 13:09 boinc_mmap_file
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user         0 Feb 11 13:09 boinc_lockfile
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user      2555 Feb 11 13:09 pandaJob.out
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user   1009239 Feb 11 13:09 agis_schedconf.cvmfs.json
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user   1512955 Feb 11 13:09 agis_ddmendpoints.agis.ALL.json
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user       420 Feb 11 13:09 workernode_map.json
[2026-02-11 14:18:31] drwx------ 5 mf493845 unix-user       440 Feb 11 13:09 pilot3
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user 286017043 Feb 11 14:16 HITS.48431096._026773.pool.root.1
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user        95 Feb 11 14:17 pilot_heartbeat.json
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user      1016 Feb 11 14:17 memory_monitor_summary.json
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user    311857 Feb 11 14:17 log.48431096._026773.job.log.tgz.1
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user      6315 Feb 11 14:17 heartbeat.json
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user      5434 Feb 11 14:18 pilotlog.txt
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user    624929 Feb 11 14:18 log.48431096._026773.job.log.1
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user       357 Feb 11 14:18 output.list
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user       620 Feb 11 14:18 runtime_log
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user    952320 Feb 11 14:18 result.tar.gz
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user      9219 Feb 11 14:18 runtime_log.err
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user       643 Feb 11 14:18 GXALDmeWEA9n9Rq4apOajLDm4fhM0noT9bVooX4SDmLRiKDmneV2Tn.diag
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user     21934 Feb 11 14:18 stderr.txt
[2026-02-11 14:18:31] HITS file was successfully produced:
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user 286017043 Feb 11 14:16 shared/HITS.pool.root.1
[2026-02-11 14:18:31]  *** Contents of shared directory: ***
[2026-02-11 14:18:31] total 942044
[2026-02-11 14:18:31] -rw-r--r-- 2 mf493845 unix-user 677063971 Feb 11 13:09 ATLAS.root_0
[2026-02-11 14:18:31] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 11 13:09 start_atlas.sh
[2026-02-11 14:18:31] -rw-r--r-- 2 mf493845 unix-user    597946 Feb 11 13:09 input.tar.gz
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user 286017043 Feb 11 14:16 HITS.pool.root.1
[2026-02-11 14:18:31] -rw------- 1 mf493845 unix-user    952320 Feb 11 14:18 result.tar.gz
14:18:33 (1896): run_atlas exited; CPU time 30215.149911
14:18:33 (1896): called boinc_finish(0)

</stderr_txt>
]]>

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