Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
12:17:39 (1494327): wrapper (7.7.26015): starting
12:17:39 (1494327): wrapper: running run_atlas (--nthreads 4)
[2026-02-12 12:17:39] Arguments: --nthreads 4
[2026-02-12 12:17:39] Threads: 4
[2026-02-12 12:17:39] Checking for CVMFS
[2026-02-12 12:17:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 12:17:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 12:17:39] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 12:17:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 12:17:39] 2.13.3.0 639369 5439 47704 156152 2 49 25317294 33554433 0 130560 0 2182069 99.986 175780 199 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-02-12 12:17:39] CVMFS is ok
[2026-02-12 12:17:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 12:17:39] Checking for apptainer binary...
[2026-02-12 12:17:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 12:17:39] Running /usr/bin/apptainer --version
[2026-02-12 12:17:39] apptainer version 1.4.5
[2026-02-12 12:17:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 12:17:39] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-02-12 12:17:39] apptainer works
[2026-02-12 12:17:39] Set ATHENA_PROC_NUMBER=4
[2026-02-12 12:17:39] Set ATHENA_CORE_NUMBER=4
[2026-02-12 12:17:39] Starting ATLAS job with PandaID=7011163403
[2026-02-12 12:17:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 13:46:01]  *** The last 200 lines of the pilot log: ***
[2026-02-12 13:46:01]  filesize=300839
[2026-02-12 13:46:01]  filetype=log
[2026-02-12 13:46:01]  guid=28edf5d1-4d11-441f-b100-d9c8e15f3ff8
[2026-02-12 13:46:01]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-12 13:46:01]  is_altstaged=None
[2026-02-12 13:46:01]  is_tar=False
[2026-02-12 13:46:01]  lfn=log.48431096._025377.job.log.tgz.1
[2026-02-12 13:46:01]  mtime=0
[2026-02-12 13:46:01]  protocol_id=None
[2026-02-12 13:46:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-12 13:46:01]  replicas=None
[2026-02-12 13:46:01]  scope=mc23_13p6TeV
[2026-02-12 13:46:01]  status=None
[2026-02-12 13:46:01]  status_code=0
[2026-02-12 13:46:01]  storage_token=
[2026-02-12 13:46:01]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-7011163403/log.48431096._025377.job.log.tgz.1
[2026-02-12 13:46:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/64/log.48431096._025377.job.log.tgz.1
[2026-02-12 13:46:01]  workdir=None
[2026-02-12 13:46:01] ]
[2026-02-12 13:46:01] 2026-02-12 11:45:15,362 | INFO     | transferring file log.48431096._025377.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-7011163403/log.48431096._025377.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-02-12 13:46:01] 2026-02-12 11:45:15,362 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-7011163403/log.48431096._025377.job.log.tgz.1 /home/ek/BOINC/slots/0/log.48431096._025377.job
[2026-02-12 13:46:01] 2026-02-12 11:45:15,370 | INFO     | adding to output.list: log.48431096._025377.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/89/64/log.48431096._025377.job.log.tg
[2026-02-12 13:46:01] 2026-02-12 11:45:15,371 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-12 13:46:01] 2026-02-12 11:45:15,371 | INFO     | summary of transferred files:
[2026-02-12 13:46:01] 2026-02-12 11:45:15,371 | INFO     |  -- lfn=log.48431096._025377.job.log.tgz.1, status_code=0, status=transferred
[2026-02-12 13:46:01] 2026-02-12 11:45:15,371 | INFO     | stage-out finished correctly
[2026-02-12 13:46:01] 2026-02-12 11:45:15,971 | INFO     | monitor loop #402: job 0:7011163403 is in state 'finished'
[2026-02-12 13:46:01] 2026-02-12 11:45:15,971 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-12 13:46:01] 2026-02-12 11:45:16,396 | INFO     | time since job start (5247s) is within the limit (349056.0s)
[2026-02-12 13:46:01] 2026-02-12 11:45:16,673 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-12 13:46:01] 2026-02-12 11:45:17,257 | INFO     | job 7011163403 has state=finished
[2026-02-12 13:46:01] 2026-02-12 11:45:17,257 | INFO     | preparing for final server update for job 7011163403 in state='finished'
[2026-02-12 13:46:01] 2026-02-12 11:45:17,489 | INFO     | PID=1498152 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-12 13:46:01] 2026-02-12 11:45:18,129 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-02-12 13:46:01] 2026-02-12 11:45:18,129 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-7011163403/jobReport.json
[2026-02-12 13:46:01] 2026-02-12 11:45:18,130 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-02-12 13:46:01] 2026-02-12 11:45:18,130 | INFO     | this job has now completed (state=finished)
[2026-02-12 13:46:01] 2026-02-12 11:45:18,130 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-12 13:46:01] 2026-02-12 11:45:18,130 | INFO     | log transfer has been attempted: DONE
[2026-02-12 13:46:01] 2026-02-12 11:45:18,130 | INFO     | job 7011163403 has finished - writing final server update
[2026-02-12 13:46:01] 2026-02-12 11:45:18,130 | INFO     | total number of processed events: 400 (read)
[2026-02-12 13:46:01] 2026-02-12 11:45:18,132 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7011163403/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 13:46:01] 2026-02-12 11:45:18,132 | INFO     | extracted standard info from prmon json
[2026-02-12 13:46:01] 2026-02-12 11:45:18,132 | INFO     | extracted standard memory fields from prmon json
[2026-02-12 13:46:01] 2026-02-12 11:45:18,132 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-12 13:46:01] 2026-02-12 11:45:18,132 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-12 13:46:01] 2026-02-12 11:45:18,132 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | fitting pss+swap vs Time
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | sum of square deviations: 152858680.0
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | sum of deviations: -19103454119.000008
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | mean x: 1770894169.0
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | mean y: 2646304.9873417723
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | intersect: 221319456754.3262
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | chi2: 0.14540266141235136
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | current memory leak: -124.97 B/s (using 79 data points, chi2=0.15)
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | could have reported an average CPU frequency of 2951 MHz (6 samples)
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | ..............................
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | . Timing measurements:
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | . get job = 0 s
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | . initial setup = 3 s
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | . payload setup = 2 s
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | . stage-in = 0 s
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | . payload execution = 5228 s
[2026-02-12 13:46:01] 2026-02-12 11:45:18,133 | INFO     | . stage-out = 0 s
[2026-02-12 13:46:01] 2026-02-12 11:45:18,134 | INFO     | . log creation = 0 s
[2026-02-12 13:46:01] 2026-02-12 11:45:18,134 | INFO     | ..............................
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | 
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | job summary report
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | --------------------------------------------------
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | PanDA job id: 7011163403
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | task id: 48431096
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | errors: (none)
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | pilot state: finished 
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | transexitcode: 0
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | exeerrorcode: 0
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | exeerrordiag: 
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | exitcode: 0
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | exitmsg: OK
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | cpuconsumptiontime: 19965 s
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | nevents: 400
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | neventsw: 0
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | pid: 1502979
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | pgrp: 1502979
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | corecount: 4
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | event service: False
[2026-02-12 13:46:01] 2026-02-12 11:45:18,264 | INFO     | sizes: {0: 2282215, 10: 2282215, 5234: 2308834, 5236: 2317832, 5237: 2317888, 5238: 2318082}
[2026-02-12 13:46:01] 2026-02-12 11:45:18,265 | INFO     | --------------------------------------------------
[2026-02-12 13:46:01] 2026-02-12 11:45:18,265 | INFO     | 
[2026-02-12 13:46:01] 2026-02-12 11:45:18,265 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,273 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,274 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,274 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,274 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,274 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 13:46:01] 2026-02-12 11:45:18,274 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,274 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 13:46:01] 2026-02-12 11:45:18,274 | INFO     | job 7011163403 has completed (purged errors)
[2026-02-12 13:46:01] 2026-02-12 11:45:18,274 | INFO     | overall cleanup function is called
[2026-02-12 13:46:01] 2026-02-12 11:45:19,281 | INFO     | --- collectZombieJob: --- 10, [1502979]
[2026-02-12 13:46:01] 2026-02-12 11:45:19,281 | INFO     | zombie collector waiting for pid 1502979
[2026-02-12 13:46:01] 2026-02-12 11:45:19,281 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 13:46:01] 2026-02-12 11:45:19,281 | INFO     | collected zombie processes
[2026-02-12 13:46:01] 2026-02-12 11:45:19,281 | INFO     | will attempt to kill all subprocesses of pid=1502979
[2026-02-12 13:46:01] 2026-02-12 11:45:19,366 | INFO     | process IDs to be killed: [1502979] (in reverse order)
[2026-02-12 13:46:01] 2026-02-12 11:45:19,394 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 13:46:01] 2026-02-12 11:45:19,394 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 13:46:01] 2026-02-12 11:45:19,396 | INFO     | did not find any defunct processes belonging to 1502979
[2026-02-12 13:46:01] 2026-02-12 11:45:19,399 | INFO     | did not find any defunct processes belonging to 1502979
[2026-02-12 13:46:01] 2026-02-12 11:45:19,399 | INFO     | ready for new job
[2026-02-12 13:46:01] 2026-02-12 11:45:19,399 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 13:46:01] 2026-02-12 11:45:19,400 | INFO     | **************************************
[2026-02-12 13:46:01] 2026-02-12 11:45:19,400 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 13:46:01] 2026-02-12 11:45:19,400 | INFO     | **************************************
[2026-02-12 13:46:01] 2026-02-12 11:45:19,400 | INFO     | 
[2026-02-12 13:46:01] 2026-02-12 11:45:19,400 | INFO     | architecture information:
[2026-02-12 13:46:01] 2026-02-12 11:45:19,401 | INFO     | executing command: cat /etc/os-release
[2026-02-12 13:46:01] 2026-02-12 11:45:19,406 | INFO     | cat /etc/os-release:
[2026-02-12 13:46:01] NAME="CentOS Linux"
[2026-02-12 13:46:01] VERSION="7 (Core)"
[2026-02-12 13:46:01] ID="centos"
[2026-02-12 13:46:01] ID_LIKE="rhel fedora"
[2026-02-12 13:46:01] VERSION_ID="7"
[2026-02-12 13:46:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 13:46:01] ANSI_COLOR="0;31"
[2026-02-12 13:46:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 13:46:01] HOME_URL="https://www.centos.org/"
[2026-02-12 13:46:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 13:46:01] 
[2026-02-12 13:46:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 13:46:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 13:46:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 13:46:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 13:46:01] 
[2026-02-12 13:46:01] 2026-02-12 11:45:19,406 | INFO     | **************************************
[2026-02-12 13:46:01] 2026-02-12 11:45:19,909 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-02-12 13:46:01] 2026-02-12 11:45:19,916 | INFO     | sufficient remaining disk space (59219378176 B)
[2026-02-12 13:46:01] 2026-02-12 11:45:19,916 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 13:46:01] 2026-02-12 11:45:19,916 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 13:46:01] 2026-02-12 11:45:19,916 | INFO     | update_server=False
[2026-02-12 13:46:01] 2026-02-12 11:45:19,916 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 13:46:01] 2026-02-12 11:45:19,916 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 13:46:01] 2026-02-12 11:45:19,916 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 13:46:01] 2026-02-12 11:45:19,916 | INFO     | aborting loop
[2026-02-12 13:46:01] 2026-02-12 11:45:20,075 | INFO     | all data control threads have been joined
[2026-02-12 13:46:01] 2026-02-12 11:45:20,904 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 13:46:01] 2026-02-12 11:45:20,921 | INFO     | [job] job monitor thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:20,921 | INFO     | [job] retrieve thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:20,921 | INFO     | [job] queue monitor thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:21,014 | INFO     | [job] validate thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:21,042 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:21,077 | INFO     | [data] control thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:21,248 | INFO     | all payload control threads have been joined
[2026-02-12 13:46:01] 2026-02-12 11:45:21,315 | INFO     | [data] copytool_in thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:21,469 | INFO     | [payload] validate_post thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:21,584 | INFO     | all job control threads have been joined
[2026-02-12 13:46:01] 2026-02-12 11:45:21,698 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:22,086 | INFO     | [payload] failed_post thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:22,253 | INFO     | [payload] control thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:22,411 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:22,416 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:22,588 | INFO     | [job] control thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:22,704 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 13:46:01] 2026-02-12 11:45:22,909 | INFO     | [data] copytool_out thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:26,710 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 13:46:01] 2026-02-12 11:45:49,652 | INFO     | PID=1498152 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-12 13:46:01] 2026-02-12 11:45:49,652 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 13:46:01] 2026-02-12 11:45:49,652 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 13:46:01] 2026-02-12 11:45:49,652 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 13:46:01] 2026-02-12 11:45:54,887 | INFO     | [monitor] cgroup control has ended
[2026-02-12 13:46:01] 2026-02-12 11:45:56,509 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139920524379968)>', '<ExcThread(monitor, started 139919750059776)>']
[2026-02-12 13:46:01] 2026-02-12 11:45:56,676 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 13:46:01] 2026-02-12 11:45:56,676 | INFO     | [monitor] control thread has ended
[2026-02-12 13:46:01] 2026-02-12 11:46:01,533 | INFO     | all workflow threads have been joined
[2026-02-12 13:46:01] 2026-02-12 11:46:01,533 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 13:46:01] 2026-02-12 11:46:01,534 | INFO     | traces error code: 0
[2026-02-12 13:46:01] 2026-02-12 11:46:01,534 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 13:46:01] 2026-02-12 11:46:01,576 [wrapper] ==== pilot stdout END ====
[2026-02-12 13:46:01] 2026-02-12 11:46:01,578 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 13:46:01] 2026-02-12 11:46:01,579 [wrapper] pilotpid: 1498152
[2026-02-12 13:46:01] 2026-02-12 11:46:01,581 [wrapper] Pilot exit status: 0
[2026-02-12 13:46:01] 2026-02-12 11:46:01,585 [wrapper] pandaids: 7011163403
[2026-02-12 13:46:01] 2026-02-12 11:46:01,605 [wrapper] cleanup supervisor_pilot 1556274 1498153
[2026-02-12 13:46:01] 2026-02-12 11:46:01,607 [wrapper] Test setup, not cleaning
[2026-02-12 13:46:01] 2026-02-12 11:46:01,608 [wrapper] apfmon messages muted
[2026-02-12 13:46:01] 2026-02-12 11:46:01,610 [wrapper] ==== wrapper stdout END ====
[2026-02-12 13:46:01] 2026-02-12 11:46:01,611 [wrapper] ==== wrapper stderr END ====
[2026-02-12 13:46:01]  *** Error codes and diagnostics ***
[2026-02-12 13:46:01]     "exeErrorCode": 0,
[2026-02-12 13:46:01]     "exeErrorDiag": "",
[2026-02-12 13:46:01]     "pilotErrorCode": 0,
[2026-02-12 13:46:01]     "pilotErrorDiag": "",
[2026-02-12 13:46:01]  *** Listing of results directory ***
[2026-02-12 13:46:01] total 951228
[2026-02-12 13:46:01] -rw-r--r-- 1 ek ek      5111 Feb 10 23:52 queuedata.json
[2026-02-12 13:46:01] -rw-r--r-- 1 ek ek    584627 Feb 10 23:52 pilot3.tar.gz
[2026-02-12 13:46:01] -rwx------ 1 ek ek     36322 Feb 10 23:52 runpilot2-wrapper.sh
[2026-02-12 13:46:01] -rw-rw-r-- 1 ek ek       100 Feb 12 12:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 13:46:01] -rwxr-xr-x 1 ek ek      7986 Feb 12 12:17 run_atlas
[2026-02-12 13:46:01] -rw-rw-r-- 1 ek ek       105 Feb 12 12:17 job.xml
[2026-02-12 13:46:01] -rw-r--r-- 2 ek ek 680320679 Feb 12 12:17 EVNT.48431094._000546.pool.root.1
[2026-02-12 13:46:01] -rw-r--r-- 2 ek ek    597964 Feb 12 12:17 input.tar.gz
[2026-02-12 13:46:01] -rw-r--r-- 2 ek ek     15845 Feb 12 12:17 start_atlas.sh
[2026-02-12 13:46:01] drwxrwx--x 2 ek ek      4096 Feb 12 12:17 shared
[2026-02-12 13:46:01] -rw-rw-r-- 1 ek ek         0 Feb 12 12:17 boinc_setup_complete
[2026-02-12 13:46:01] -rw-rw-r-- 1 ek ek      9841 Feb 12 12:17 init_data.xml
[2026-02-12 13:46:01] -rw-rw-r-- 1 ek ek         0 Feb 12 12:17 boinc_lockfile
[2026-02-12 13:46:01] -rw-rw-r-- 1 ek ek      2556 Feb 12 12:17 pandaJob.out
[2026-02-12 13:46:01] -rw------- 1 ek ek        50 Feb 12 12:17 setup.sh.local
[2026-02-12 13:46:01] -rw------- 1 ek ek   1000188 Feb 12 12:17 agis_schedconf.cvmfs.json
[2026-02-12 13:46:01] -rw------- 1 ek ek   1512955 Feb 12 12:17 agis_ddmendpoints.agis.ALL.json
[2026-02-12 13:46:01] -rw------- 1 ek ek       433 Feb 12 12:17 workernode_map.json
[2026-02-12 13:46:01] drwx------ 5 ek ek      4096 Feb 12 12:17 pilot3
[2026-02-12 13:46:01] -rw------- 1 ek ek 287663778 Feb 12 13:44 HITS.48431096._025377.pool.root.1
[2026-02-12 13:46:01] -rw------- 1 ek ek      1019 Feb 12 13:45 memory_monitor_summary.json
[2026-02-12 13:46:01] -rw------- 1 ek ek    300839 Feb 12 13:45 log.48431096._025377.job.log.tgz.1
[2026-02-12 13:46:01] -rw------- 1 ek ek      6335 Feb 12 13:45 heartbeat.json
[2026-02-12 13:46:01] -rw-rw-r-- 1 ek ek       530 Feb 12 13:45 boinc_task_state.xml
[2026-02-12 13:46:01] -rw------- 1 ek ek        95 Feb 12 13:45 pilot_heartbeat.json
[2026-02-12 13:46:01] -rw-rw-r-- 1 ek ek      8192 Feb 12 13:45 boinc_mmap_file
[2026-02-12 13:46:01] -rw-rw-r-- 1 ek ek        27 Feb 12 13:45 wrapper_checkpoint.txt
[2026-02-12 13:46:01] -rw------- 1 ek ek      4744 Feb 12 13:46 pilotlog.txt
[2026-02-12 13:46:01] -rw------- 1 ek ek    763565 Feb 12 13:46 log.48431096._025377.job.log.1
[2026-02-12 13:46:01] -rw------- 1 ek ek       357 Feb 12 13:46 output.list
[2026-02-12 13:46:01] -rw-rw-r-- 1 ek ek       620 Feb 12 13:46 runtime_log
[2026-02-12 13:46:01] -rw------- 1 ek ek   1085440 Feb 12 13:46 result.tar.gz
[2026-02-12 13:46:01] -rw-rw-r-- 1 ek ek      9501 Feb 12 13:46 runtime_log.err
[2026-02-12 13:46:01] -rw------- 1 ek ek       661 Feb 12 13:46 LfyLDmEqAA9n9Rq4apOajLDm4fhM0noT9bVooX4SDmk5hKDmzcU0Ro.diag
[2026-02-12 13:46:01] -rw-rw-r-- 1 ek ek     21173 Feb 12 13:46 stderr.txt
[2026-02-12 13:46:01] HITS file was successfully produced:
[2026-02-12 13:46:01] -rw------- 1 ek ek 287663778 Feb 12 13:44 shared/HITS.pool.root.1
[2026-02-12 13:46:01]  *** Contents of shared directory: ***
[2026-02-12 13:46:01] total 946968
[2026-02-12 13:46:01] -rw-r--r-- 2 ek ek 680320679 Feb 12 12:17 ATLAS.root_0
[2026-02-12 13:46:01] -rw-r--r-- 2 ek ek    597964 Feb 12 12:17 input.tar.gz
[2026-02-12 13:46:01] -rw-r--r-- 2 ek ek     15845 Feb 12 12:17 start_atlas.sh
[2026-02-12 13:46:01] -rw------- 1 ek ek 287663778 Feb 12 13:44 HITS.pool.root.1
[2026-02-12 13:46:01] -rw------- 1 ek ek   1085440 Feb 12 13:46 result.tar.gz
13:46:03 (1494327): run_atlas exited; CPU time 20007.762173
13:46:03 (1494327): called boinc_finish(0)

</stderr_txt>
]]>

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