Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:11:49 (3579859): wrapper (7.7.26015): starting
10:11:49 (3579859): wrapper: running run_atlas (--nthreads 2)
[2026-02-11 10:11:49] Arguments: --nthreads 2
[2026-02-11 10:11:49] Threads: 2
[2026-02-11 10:11:49] Checking for CVMFS
[2026-02-11 10:11:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-11 10:11:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-11 10:11:49] Running cvmfs_config stat atlas.cern.ch
[2026-02-11 10:11:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-11 10:11:49] 2.9.2.0 2873704 7388 65204 156109 1 50 23586897 36864001 0 130560 0 2087895 99.977 250518 12338 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-11 10:11:49] CVMFS is ok
[2026-02-11 10:11:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-11 10:11:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-11 10:11:49] Further information can be found at the LHC@home message board.
[2026-02-11 10:11:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-11 10:11:49] Checking for apptainer binary...
[2026-02-11 10:11:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-11 10:11:49] Running /usr/bin/apptainer --version
[2026-02-11 10:11:49] apptainer version 1.4.1-1.1
[2026-02-11 10:11:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-11 10:11:49] thA337
[2026-02-11 10:11:49] apptainer works
[2026-02-11 10:11:49] Set ATHENA_PROC_NUMBER=2
[2026-02-11 10:11:49] Set ATHENA_CORE_NUMBER=2
[2026-02-11 10:11:49] Starting ATLAS job with PandaID=7007870664
[2026-02-11 10:11:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-11 12:14:25]  *** The last 200 lines of the pilot log: ***
[2026-02-11 12:14:25] 2026-02-11 11:13:35,393 | INFO     | collected zombie processes
[2026-02-11 12:14:25] 2026-02-11 11:13:35,393 | INFO     | will attempt to kill all subprocesses of pid=3588284
[2026-02-11 12:14:25] 2026-02-11 11:13:35,425 | INFO     | process IDs to be killed: [3588284] (in reverse order)
[2026-02-11 12:14:25] 2026-02-11 11:13:35,446 | WARNING  | found no corresponding commands to process id(s)
[2026-02-11 12:14:25] 2026-02-11 11:13:35,446 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-11 12:14:25] 2026-02-11 11:13:35,447 | INFO     | did not find any defunct processes belonging to 3588284
[2026-02-11 12:14:25] 2026-02-11 11:13:35,448 | INFO     | did not find any defunct processes belonging to 3588284
[2026-02-11 12:14:25] 2026-02-11 11:13:35,448 | INFO     | ready for new job
[2026-02-11 12:14:25] 2026-02-11 11:13:35,448 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-11 12:14:25] 2026-02-11 11:13:35,448 | INFO     | **************************************
[2026-02-11 12:14:25] 2026-02-11 11:13:35,448 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-11 12:14:25] 2026-02-11 11:13:35,448 | INFO     | **************************************
[2026-02-11 12:14:25] 2026-02-11 11:13:35,448 | INFO     | 
[2026-02-11 12:14:25] 2026-02-11 11:13:35,449 | INFO     | architecture information:
[2026-02-11 12:14:25] 2026-02-11 11:13:35,449 | INFO     | executing command: cat /etc/os-release
[2026-02-11 12:14:25] 2026-02-11 11:13:35,457 | INFO     | cat /etc/os-release:
[2026-02-11 12:14:25] NAME="CentOS Linux"
[2026-02-11 12:14:25] VERSION="7 (Core)"
[2026-02-11 12:14:25] ID="centos"
[2026-02-11 12:14:25] ID_LIKE="rhel fedora"
[2026-02-11 12:14:25] VERSION_ID="7"
[2026-02-11 12:14:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-11 12:14:25] ANSI_COLOR="0;31"
[2026-02-11 12:14:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-11 12:14:25] HOME_URL="https://www.centos.org/"
[2026-02-11 12:14:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-11 12:14:25] 
[2026-02-11 12:14:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-11 12:14:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-11 12:14:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-11 12:14:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-11 12:14:25] 
[2026-02-11 12:14:25] 2026-02-11 11:13:35,457 | INFO     | **************************************
[2026-02-11 12:14:25] 2026-02-11 11:13:35,960 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-11 12:14:25] 2026-02-11 11:13:35,972 | INFO     | sufficient remaining disk space (485156192256 B)
[2026-02-11 12:14:25] 2026-02-11 11:13:35,972 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-11 12:14:25] 2026-02-11 11:13:35,973 | INFO     | current server update state: UPDATING_FINAL
[2026-02-11 12:14:25] 2026-02-11 11:13:35,973 | INFO     | update_server=False
[2026-02-11 12:14:25] 2026-02-11 11:13:35,973 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-11 12:14:25] 2026-02-11 11:13:35,973 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-11 12:14:25] 2026-02-11 11:13:35,973 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-11 12:14:25] 2026-02-11 11:13:35,973 | INFO     | aborting loop
[2026-02-11 12:14:25] 2026-02-11 11:13:35,973 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-11 12:14:25] 2026-02-11 11:13:36,191 | INFO     | all payload control threads have been joined
[2026-02-11 12:14:25] 2026-02-11 11:13:36,694 | INFO     | all data control threads have been joined
[2026-02-11 12:14:25] 2026-02-11 11:13:36,746 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-11 12:14:25] 2026-02-11 11:13:36,894 | INFO     | all job control threads have been joined
[2026-02-11 12:14:25] 2026-02-11 11:13:36,978 | INFO     | [job] retrieve thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:36,978 | INFO     | [job] job monitor thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:36,980 | INFO     | [job] queue monitor thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:36,996 | INFO     | [payload] validate_post thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:37,197 | INFO     | [payload] control thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:37,700 | INFO     | [data] control thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:37,817 | INFO     | [payload] execute_payloads thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:37,900 | INFO     | [job] control thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:38,046 | INFO     | [job] validate thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:38,120 | INFO     | [payload] validate_pre thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:38,174 | INFO     | [job] create_data_payload thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:38,197 | INFO     | [payload] failed_post thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:38,265 | INFO     | [data] copytool_in thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:38,709 | INFO     | job.realtimelogging is not enabled
[2026-02-11 12:14:25] 2026-02-11 11:13:38,752 | INFO     | [data] copytool_out thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:39,715 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:13:39,980 | INFO     | [data] queue_monitor thread has finished
[2026-02-11 12:14:25] 2026-02-11 11:14:05,910 | INFO     | PID=3583878 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-11 12:14:25] 2026-02-11 11:14:05,911 | INFO     | found 0 job(s) in 20 queues
[2026-02-11 12:14:25] 2026-02-11 11:14:05,911 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-11 12:14:25] 2026-02-11 11:14:05,911 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-11 12:14:25] 2026-02-11 11:14:19,757 | INFO     | [monitor] cgroup control has ended
[2026-02-11 12:14:25] 2026-02-11 11:14:20,164 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139671875753792)>', '<ExcThread(monitor, started 139671237543680)>']
[2026-02-11 12:14:25] 2026-02-11 11:14:20,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-11 12:14:25] 2026-02-11 11:14:20,991 | INFO     | [monitor] control thread has ended
[2026-02-11 12:14:25] 2026-02-11 11:14:25,189 | INFO     | all workflow threads have been joined
[2026-02-11 12:14:25] 2026-02-11 11:14:25,191 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-11 12:14:25] 2026-02-11 11:14:25,191 | INFO     | traces error code: 0
[2026-02-11 12:14:25] 2026-02-11 11:14:25,192 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-11 12:14:25] 2026-02-11 11:14:25,245 [wrapper] ==== pilot stdout END ====
[2026-02-11 12:14:25] 2026-02-11 11:14:25,247 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-11 12:14:25] 2026-02-11 11:14:25,250 [wrapper] pilotpid: 3583878
[2026-02-11 12:14:25] 2026-02-11 11:14:25,252 [wrapper] Pilot exit status: 0
[2026-02-11 12:14:25] 2026-02-11 11:14:25,258 [wrapper] pandaids: 7007870664
[2026-02-11 12:14:25] 2026-02-11 11:14:25,273 [wrapper] cleanup supervisor_pilot 3593538 3583879
[2026-02-11 12:14:25] 2026-02-11 11:14:25,275 [wrapper] Test setup, not cleaning
[2026-02-11 12:14:25] 2026-02-11 11:14:25,277 [wrapper] apfmon messages muted
[2026-02-11 12:14:25] 2026-02-11 11:14:25,279 [wrapper] ==== wrapper stdout END ====
[2026-02-11 12:14:25] 2026-02-11 11:14:25,281 [wrapper] ==== wrapper stderr END ====
[2026-02-11 12:14:25]  *** Error codes and diagnostics ***
[2026-02-11 12:14:25]     "exeErrorCode": 0,
[2026-02-11 12:14:25]     "exeErrorDiag": "",
[2026-02-11 12:14:25]     "pilotErrorCode": 0,
[2026-02-11 12:14:25]     "pilotErrorDiag": "",
[2026-02-11 12:14:25]  *** Listing of results directory ***
[2026-02-11 12:14:25] total 663076
[2026-02-11 12:14:25] -rwx------ 1 boinc boinc     36322 Feb 10 15:47 runpilot2-wrapper.sh
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc    584627 Feb 10 15:48 pilot3.tar.gz
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc      5111 Feb 10 15:50 queuedata.json
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc       100 Feb 11 10:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-11 12:14:25] -rwxr-xr-x 1 boinc boinc      7986 Feb 11 10:11 run_atlas
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc       105 Feb 11 10:11 job.xml
[2026-02-11 12:14:25] -rw-r--r-- 2 boinc boinc 493004757 Feb 11 10:11 EVNT.48318008._000310.pool.root.1
[2026-02-11 12:14:25] -rw-r--r-- 2 boinc boinc    597946 Feb 11 10:11 input.tar.gz
[2026-02-11 12:14:25] -rw-r--r-- 2 boinc boinc     15845 Feb 11 10:11 start_atlas.sh
[2026-02-11 12:14:25] drwxrwx--x 2 boinc boinc      4096 Feb 11 10:11 shared
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc         0 Feb 11 10:11 boinc_setup_complete
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc      6206 Feb 11 10:11 init_data.xml
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc         0 Feb 11 10:11 boinc_lockfile
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc      2528 Feb 11 10:11 pandaJob.out
[2026-02-11 12:14:25] -rw------- 1 boinc boinc   1009641 Feb 11 10:12 agis_schedconf.cvmfs.json
[2026-02-11 12:14:25] -rw------- 1 boinc boinc   1512955 Feb 11 10:12 agis_ddmendpoints.agis.ALL.json
[2026-02-11 12:14:25] -rw------- 1 boinc boinc       419 Feb 11 10:12 workernode_map.json
[2026-02-11 12:14:25] drwx------ 5 boinc boinc      4096 Feb 11 10:12 pilot3
[2026-02-11 12:14:25] -rw------- 1 boinc boinc 179350325 Feb 11 12:13 HITS.48318010._017057.pool.root.1
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc       530 Feb 11 12:13 boinc_task_state.xml
[2026-02-11 12:14:25] -rw------- 1 boinc boinc      1016 Feb 11 12:13 memory_monitor_summary.json
[2026-02-11 12:14:25] -rw------- 1 boinc boinc    302536 Feb 11 12:13 log.48318010._017057.job.log.tgz.1
[2026-02-11 12:14:25] -rw------- 1 boinc boinc      6299 Feb 11 12:13 heartbeat.json
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc      8192 Feb 11 12:13 boinc_mmap_file
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc        27 Feb 11 12:13 wrapper_checkpoint.txt
[2026-02-11 12:14:25] -rw------- 1 boinc boinc        95 Feb 11 12:14 pilot_heartbeat.json
[2026-02-11 12:14:25] -rw------- 1 boinc boinc      4820 Feb 11 12:14 pilotlog.txt
[2026-02-11 12:14:25] -rw------- 1 boinc boinc   1048666 Feb 11 12:14 log.48318010._017057.job.log.1
[2026-02-11 12:14:25] -rw------- 1 boinc boinc       357 Feb 11 12:14 output.list
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc       620 Feb 11 12:14 runtime_log
[2026-02-11 12:14:25] -rw------- 1 boinc boinc   1372160 Feb 11 12:14 result.tar.gz
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc      8896 Feb 11 12:14 runtime_log.err
[2026-02-11 12:14:25] -rw------- 1 boinc boinc       657 Feb 11 12:14 9tHNDmcC498n9Rq4apOajLDm4fhM0noT9bVooX4SDmeghKDmgTcHgm.diag
[2026-02-11 12:14:25] -rw-r--r-- 1 boinc boinc     10373 Feb 11 12:14 stderr.txt
[2026-02-11 12:14:25] HITS file was successfully produced:
[2026-02-11 12:14:25] -rw------- 1 boinc boinc 179350325 Feb 11 12:13 shared/HITS.pool.root.1
[2026-02-11 12:14:25]  *** Contents of shared directory: ***
[2026-02-11 12:14:25] total 658548
[2026-02-11 12:14:25] -rw-r--r-- 2 boinc boinc 493004757 Feb 11 10:11 ATLAS.root_0
[2026-02-11 12:14:25] -rw-r--r-- 2 boinc boinc    597946 Feb 11 10:11 input.tar.gz
[2026-02-11 12:14:25] -rw-r--r-- 2 boinc boinc     15845 Feb 11 10:11 start_atlas.sh
[2026-02-11 12:14:25] -rw------- 1 boinc boinc 179350325 Feb 11 12:13 HITS.pool.root.1
[2026-02-11 12:14:25] -rw------- 1 boinc boinc   1372160 Feb 11 12:14 result.tar.gz
12:14:26 (3579859): run_atlas exited; CPU time 14085.558042
12:14:26 (3579859): called boinc_finish(0)

</stderr_txt>
]]>

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