Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:06:20 (805038): wrapper (7.7.26015): starting
01:06:20 (805038): wrapper: running run_atlas (--nthreads 4)
[2026-02-11 01:06:20] Arguments: --nthreads 4
[2026-02-11 01:06:20] Threads: 4
[2026-02-11 01:06:20] Checking for CVMFS
[2026-02-11 01:06:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-11 01:06:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-11 01:06:21] Running cvmfs_config stat atlas.cern.ch
[2026-02-11 01:06:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-11 01:06:21] 2.9.2.0 3652207 6927 94052 156096 3 50 24767399 36864001 0 130560 0 3780724 99.988 228641 11737 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-11 01:06:21] CVMFS is ok
[2026-02-11 01:06:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-11 01:06:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-11 01:06:21] Further information can be found at the LHC@home message board.
[2026-02-11 01:06:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-11 01:06:21] Checking for apptainer binary...
[2026-02-11 01:06:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-11 01:06:21] Running /usr/bin/apptainer --version
[2026-02-11 01:06:21] apptainer version 1.4.1-1.1
[2026-02-11 01:06:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-11 01:06:21] magicA244a
[2026-02-11 01:06:21] apptainer works
[2026-02-11 01:06:21] Set ATHENA_PROC_NUMBER=4
[2026-02-11 01:06:21] Set ATHENA_CORE_NUMBER=4
[2026-02-11 01:06:21] Starting ATLAS job with PandaID=7007431850
[2026-02-11 01:06:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-11 02:37:01]  *** The last 200 lines of the pilot log: ***
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,177 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,178 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-11 02:37:01] 2026-02-11 01:36:29,178 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,178 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-11 02:37:01] 2026-02-11 01:36:29,178 | INFO     | job 7007431850 has completed (purged errors)
[2026-02-11 02:37:01] 2026-02-11 01:36:29,178 | INFO     | overall cleanup function is called
[2026-02-11 02:37:01] 2026-02-11 01:36:30,185 | INFO     | --- collectZombieJob: --- 10, [813648]
[2026-02-11 02:37:01] 2026-02-11 01:36:30,185 | INFO     | zombie collector waiting for pid 813648
[2026-02-11 02:37:01] 2026-02-11 01:36:30,185 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-11 02:37:01] 2026-02-11 01:36:30,185 | INFO     | collected zombie processes
[2026-02-11 02:37:01] 2026-02-11 01:36:30,185 | INFO     | will attempt to kill all subprocesses of pid=813648
[2026-02-11 02:37:01] 2026-02-11 01:36:30,229 | INFO     | process IDs to be killed: [813648] (in reverse order)
[2026-02-11 02:37:01] 2026-02-11 01:36:30,256 | WARNING  | found no corresponding commands to process id(s)
[2026-02-11 02:37:01] 2026-02-11 01:36:30,256 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-11 02:37:01] 2026-02-11 01:36:30,258 | INFO     | did not find any defunct processes belonging to 813648
[2026-02-11 02:37:01] 2026-02-11 01:36:30,259 | INFO     | did not find any defunct processes belonging to 813648
[2026-02-11 02:37:01] 2026-02-11 01:36:30,259 | INFO     | ready for new job
[2026-02-11 02:37:01] 2026-02-11 01:36:30,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-11 02:37:01] 2026-02-11 01:36:30,259 | INFO     | **************************************
[2026-02-11 02:37:01] 2026-02-11 01:36:30,260 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-11 02:37:01] 2026-02-11 01:36:30,260 | INFO     | **************************************
[2026-02-11 02:37:01] 2026-02-11 01:36:30,260 | INFO     | 
[2026-02-11 02:37:01] 2026-02-11 01:36:30,260 | INFO     | architecture information:
[2026-02-11 02:37:01] 2026-02-11 01:36:30,260 | INFO     | executing command: cat /etc/os-release
[2026-02-11 02:37:01] 2026-02-11 01:36:30,269 | INFO     | cat /etc/os-release:
[2026-02-11 02:37:01] NAME="CentOS Linux"
[2026-02-11 02:37:01] VERSION="7 (Core)"
[2026-02-11 02:37:01] ID="centos"
[2026-02-11 02:37:01] ID_LIKE="rhel fedora"
[2026-02-11 02:37:01] VERSION_ID="7"
[2026-02-11 02:37:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-11 02:37:01] ANSI_COLOR="0;31"
[2026-02-11 02:37:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-11 02:37:01] HOME_URL="https://www.centos.org/"
[2026-02-11 02:37:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-11 02:37:01] 
[2026-02-11 02:37:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-11 02:37:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-11 02:37:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-11 02:37:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-11 02:37:01] 
[2026-02-11 02:37:01] 2026-02-11 01:36:30,270 | INFO     | **************************************
[2026-02-11 02:37:01] 2026-02-11 01:36:30,773 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-11 02:37:01] 2026-02-11 01:36:30,786 | INFO     | sufficient remaining disk space (331200069632 B)
[2026-02-11 02:37:01] 2026-02-11 01:36:30,786 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-11 02:37:01] 2026-02-11 01:36:30,786 | INFO     | current server update state: UPDATING_FINAL
[2026-02-11 02:37:01] 2026-02-11 01:36:30,787 | INFO     | update_server=False
[2026-02-11 02:37:01] 2026-02-11 01:36:30,787 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-11 02:37:01] 2026-02-11 01:36:30,787 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-11 02:37:01] 2026-02-11 01:36:30,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-11 02:37:01] 2026-02-11 01:36:30,787 | INFO     | aborting loop
[2026-02-11 02:37:01] 2026-02-11 01:36:30,787 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-11 02:37:01] 2026-02-11 01:36:31,050 | INFO     | all data control threads have been joined
[2026-02-11 02:37:01] 2026-02-11 01:36:31,284 | INFO     | all payload control threads have been joined
[2026-02-11 02:37:01] 2026-02-11 01:36:31,792 | INFO     | [job] retrieve thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:31,793 | INFO     | [job] job monitor thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:31,793 | INFO     | [job] queue monitor thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:31,793 | INFO     | [payload] validate_pre thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:31,879 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-11 02:37:01] 2026-02-11 01:36:31,924 | INFO     | [payload] execute_payloads thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:31,937 | INFO     | [data] copytool_in thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:32,055 | INFO     | [data] control thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:32,056 | INFO     | all job control threads have been joined
[2026-02-11 02:37:01] 2026-02-11 01:36:32,151 | INFO     | [payload] validate_post thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:32,179 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:32,290 | INFO     | [payload] control thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:33,062 | INFO     | [job] control thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:33,134 | INFO     | [payload] failed_post thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:33,187 | INFO     | [job] validate thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:33,286 | INFO     | [job] create_data_payload thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:33,885 | INFO     | [data] copytool_out thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:34,794 | INFO     | [data] queue_monitor thread has finished
[2026-02-11 02:37:01] 2026-02-11 01:36:37,800 | INFO     | [monitor] cgroup control has ended
[2026-02-11 02:37:01] 2026-02-11 01:36:39,287 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140220028864320)>', '<ExcThread(monitor, started 140219407922944)>']
[2026-02-11 02:37:01] 2026-02-11 01:36:44,296 | INFO     | all workflow threads have been joined
[2026-02-11 02:37:01] 2026-02-11 01:36:44,296 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-11 02:37:01] 2026-02-11 01:36:44,297 | INFO     | traces error code: 0
[2026-02-11 02:37:01] 2026-02-11 01:36:44,297 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-11 02:37:01] 2026-02-11 01:37:01,201 | INFO     | PID=809148 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-11 02:37:01] 2026-02-11 01:37:01,201 | INFO     | found 0 job(s) in 20 queues
[2026-02-11 02:37:01] 2026-02-11 01:37:01,201 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-11 02:37:01] 2026-02-11 01:37:01,201 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-11 02:37:01] 2026-02-11 01:37:01,201 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-11 02:37:01] 2026-02-11 01:37:01,202 | CRITICAL | thread 'MainThread' is not alive
[2026-02-11 02:37:01] 2026-02-11 01:37:01,202 | INFO     | [monitor] control thread has ended
[2026-02-11 02:37:01] 2026-02-11 01:37:01,253 [wrapper] ==== pilot stdout END ====
[2026-02-11 02:37:01] 2026-02-11 01:37:01,256 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-11 02:37:01] 2026-02-11 01:37:01,258 [wrapper] pilotpid: 809148
[2026-02-11 02:37:01] 2026-02-11 01:37:01,261 [wrapper] Pilot exit status: 0
[2026-02-11 02:37:01] 2026-02-11 01:37:01,269 [wrapper] pandaids: 7007431850
[2026-02-11 02:37:01] 2026-02-11 01:37:01,286 [wrapper] cleanup supervisor_pilot  819257 809149
[2026-02-11 02:37:01] 2026-02-11 01:37:01,288 [wrapper] Test setup, not cleaning
[2026-02-11 02:37:01] 2026-02-11 01:37:01,291 [wrapper] apfmon messages muted
[2026-02-11 02:37:01] 2026-02-11 01:37:01,294 [wrapper] ==== wrapper stdout END ====
[2026-02-11 02:37:01] 2026-02-11 01:37:01,296 [wrapper] ==== wrapper stderr END ====
[2026-02-11 02:37:01]  *** Error codes and diagnostics ***
[2026-02-11 02:37:01]     "exeErrorCode": 0,
[2026-02-11 02:37:01]     "exeErrorDiag": "",
[2026-02-11 02:37:01]     "pilotErrorCode": 0,
[2026-02-11 02:37:01]     "pilotErrorDiag": "",
[2026-02-11 02:37:01]  *** Listing of results directory ***
[2026-02-11 02:37:01] total 938780
[2026-02-11 02:37:01] -rwx------ 1 boinc boinc     36322 Feb 10 06:22 runpilot2-wrapper.sh
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc    584627 Feb 10 06:25 pilot3.tar.gz
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc      5111 Feb 10 06:26 queuedata.json
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc       100 Feb 11 01:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-11 02:37:01] -rwxr-xr-x 1 boinc boinc      7986 Feb 11 01:06 run_atlas
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc       105 Feb 11 01:06 job.xml
[2026-02-11 02:37:01] -rw-r--r-- 2 boinc boinc 675885611 Feb 11 01:06 EVNT.48508760._000052.pool.root.1
[2026-02-11 02:37:01] -rw-r--r-- 2 boinc boinc    597952 Feb 11 01:06 input.tar.gz
[2026-02-11 02:37:01] -rw-r--r-- 2 boinc boinc     15845 Feb 11 01:06 start_atlas.sh
[2026-02-11 02:37:01] drwxrwx--x 2 boinc boinc      4096 Feb 11 01:06 shared
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc         0 Feb 11 01:06 boinc_setup_complete
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc      6438 Feb 11 01:06 init_data.xml
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc         0 Feb 11 01:06 boinc_lockfile
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc      2549 Feb 11 01:06 pandaJob.out
[2026-02-11 02:37:01] -rw------- 1 boinc boinc   1009657 Feb 11 01:06 agis_schedconf.cvmfs.json
[2026-02-11 02:37:01] -rw------- 1 boinc boinc   1512955 Feb 11 01:06 agis_ddmendpoints.agis.ALL.json
[2026-02-11 02:37:01] -rw------- 1 boinc boinc       427 Feb 11 01:06 workernode_map.json
[2026-02-11 02:37:01] drwx------ 5 boinc boinc      4096 Feb 11 01:06 pilot3
[2026-02-11 02:37:01] -rw------- 1 boinc boinc 279336225 Feb 11 02:36 HITS.48508763._002651.pool.root.1
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc       530 Feb 11 02:36 boinc_task_state.xml
[2026-02-11 02:37:01] -rw------- 1 boinc boinc      1017 Feb 11 02:36 memory_monitor_summary.json
[2026-02-11 02:37:01] -rw------- 1 boinc boinc    292258 Feb 11 02:36 log.48508763._002651.job.log.tgz.1
[2026-02-11 02:37:01] -rw------- 1 boinc boinc      6303 Feb 11 02:36 heartbeat.json
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc      8192 Feb 11 02:36 boinc_mmap_file
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc        27 Feb 11 02:36 wrapper_checkpoint.txt
[2026-02-11 02:37:01] -rw------- 1 boinc boinc       816 Feb 11 02:37 pilotlog.txt
[2026-02-11 02:37:01] -rw------- 1 boinc boinc        95 Feb 11 02:37 pilot_heartbeat.json
[2026-02-11 02:37:01] -rw------- 1 boinc boinc    784879 Feb 11 02:37 log.48508763._002651.job.log.1
[2026-02-11 02:37:01] -rw------- 1 boinc boinc       357 Feb 11 02:37 output.list
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc       620 Feb 11 02:37 runtime_log
[2026-02-11 02:37:01] -rw------- 1 boinc boinc   1095680 Feb 11 02:37 result.tar.gz
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc      8916 Feb 11 02:37 runtime_log.err
[2026-02-11 02:37:01] -rw------- 1 boinc boinc       661 Feb 11 02:37 1sZNDm2Nv98n9Rq4apOajLDm4fhM0noT9bVooX4SDmHtgKDmQC9zQo.diag
[2026-02-11 02:37:01] -rw-r--r-- 1 boinc boinc     12631 Feb 11 02:37 stderr.txt
[2026-02-11 02:37:01] HITS file was successfully produced:
[2026-02-11 02:37:01] -rw------- 1 boinc boinc 279336225 Feb 11 02:36 shared/HITS.pool.root.1
[2026-02-11 02:37:01]  *** Contents of shared directory: ***
[2026-02-11 02:37:01] total 934520
[2026-02-11 02:37:01] -rw-r--r-- 2 boinc boinc 675885611 Feb 11 01:06 ATLAS.root_0
[2026-02-11 02:37:01] -rw-r--r-- 2 boinc boinc    597952 Feb 11 01:06 input.tar.gz
[2026-02-11 02:37:01] -rw-r--r-- 2 boinc boinc     15845 Feb 11 01:06 start_atlas.sh
[2026-02-11 02:37:01] -rw------- 1 boinc boinc 279336225 Feb 11 02:36 HITS.pool.root.1
[2026-02-11 02:37:01] -rw------- 1 boinc boinc   1095680 Feb 11 02:37 result.tar.gz
02:37:02 (805038): run_atlas exited; CPU time 20538.398101
02:37:02 (805038): called boinc_finish(0)

</stderr_txt>
]]>

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