Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
08:24:01 (2183588): wrapper (7.7.26015): starting
08:24:01 (2183588): wrapper: running run_atlas (--nthreads 12)
[2026-02-10 08:24:01] Arguments: --nthreads 12
[2026-02-10 08:24:01] Threads: 12
[2026-02-10 08:24:01] Checking for CVMFS
[2026-02-10 08:24:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 08:24:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 08:24:01] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 08:24:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 08:24:01] 2.13.2.0 2657 4070 58028 156085 2 188 9889262 16777216 916 130560 0 6374868 99.996 106170 755 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2026-02-10 08:24:01] CVMFS is ok
[2026-02-10 08:24:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 08:24:01] Checking for apptainer binary...
[2026-02-10 08:24:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 08:24:01] Running /usr/bin/apptainer --version
[2026-02-10 08:24:01] apptainer version 1.3.0-bp160.1.36
[2026-02-10 08:24:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 08:24:01] boinc-runner
[2026-02-10 08:24:01] apptainer works
[2026-02-10 08:24:01] Set ATHENA_PROC_NUMBER=12
[2026-02-10 08:24:01] Set ATHENA_CORE_NUMBER=12
[2026-02-10 08:24:01] Starting ATLAS job with PandaID=7007307864
[2026-02-10 08:24:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 08:51:18]  *** The last 200 lines of the pilot log: ***
[2026-02-10 08:51:18]  domain=
[2026-02-10 08:51:18]  filesize=338032
[2026-02-10 08:51:18]  filetype=log
[2026-02-10 08:51:18]  guid=15e0794e-da66-4528-9f16-5af142eb4638
[2026-02-10 08:51:18]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-10 08:51:18]  is_altstaged=None
[2026-02-10 08:51:18]  is_tar=False
[2026-02-10 08:51:18]  lfn=log.48442031._007385.job.log.tgz.1
[2026-02-10 08:51:18]  mtime=0
[2026-02-10 08:51:18]  protocol_id=None
[2026-02-10 08:51:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-10 08:51:18]  replicas=None
[2026-02-10 08:51:18]  scope=mc23_13p6TeV
[2026-02-10 08:51:18]  status=None
[2026-02-10 08:51:18]  status_code=0
[2026-02-10 08:51:18]  storage_token=
[2026-02-10 08:51:18]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-7007307864/log.48442031._007385.job.log.tgz.1
[2026-02-10 08:51:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/b5/log.48442031._007385.job.log.tgz.1
[2026-02-10 08:51:18]  workdir=None
[2026-02-10 08:51:18] ]
[2026-02-10 08:51:18] 2026-02-10 14:50:18,804 | INFO     | transferring file log.48442031._007385.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-7007307864/log.48442031._007385.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-02-10 08:51:18] 2026-02-10 14:50:18,804 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-7007307864/log.48442031._007385.job.log.tgz.1 /var/lib/boinc/slots/3/log.48442031._007385.job
[2026-02-10 08:51:18] 2026-02-10 14:50:18,813 | INFO     | adding to output.list: log.48442031._007385.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/b5/log.48442031._007385.job.log.tg
[2026-02-10 08:51:18] 2026-02-10 14:50:18,813 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-10 08:51:18] 2026-02-10 14:50:18,813 | INFO     | summary of transferred files:
[2026-02-10 08:51:18] 2026-02-10 14:50:18,813 | INFO     |  -- lfn=log.48442031._007385.job.log.tgz.1, status_code=0, status=transferred
[2026-02-10 08:51:18] 2026-02-10 14:50:18,813 | INFO     | stage-out finished correctly
[2026-02-10 08:51:18] 2026-02-10 14:50:19,097 | INFO     | time since job start (1569s) is within the limit (349056.0s)
[2026-02-10 08:51:18] 2026-02-10 14:50:19,667 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-10 08:51:18] 2026-02-10 14:50:19,691 | INFO     | job 7007307864 has state=finished
[2026-02-10 08:51:18] 2026-02-10 14:50:19,691 | INFO     | preparing for final server update for job 7007307864 in state='finished'
[2026-02-10 08:51:18] 2026-02-10 14:50:19,691 | INFO     | reading metadata from: /var/lib/boinc/slots/3/PanDA_Pilot-7007307864/jobReport.json
[2026-02-10 08:51:18] 2026-02-10 14:50:19,692 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/3/workernode_map.json
[2026-02-10 08:51:18] 2026-02-10 14:50:19,693 | INFO     | this job has now completed (state=finished)
[2026-02-10 08:51:18] 2026-02-10 14:50:19,693 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-10 08:51:18] 2026-02-10 14:50:19,693 | INFO     | log transfer has been attempted: DONE
[2026-02-10 08:51:18] 2026-02-10 14:50:19,693 | INFO     | job 7007307864 has finished - writing final server update
[2026-02-10 08:51:18] 2026-02-10 14:50:19,693 | INFO     | total number of processed events: 400 (read)
[2026-02-10 08:51:18] 2026-02-10 14:50:19,695 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-7007307864/memory_monitor_summary.json (trf name=prmon)
[2026-02-10 08:51:18] 2026-02-10 14:50:19,695 | INFO     | extracted standard info from prmon json
[2026-02-10 08:51:18] 2026-02-10 14:50:19,695 | INFO     | extracted standard memory fields from prmon json
[2026-02-10 08:51:18] 2026-02-10 14:50:19,695 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-10 08:51:18] 2026-02-10 14:50:19,695 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-10 08:51:18] 2026-02-10 14:50:19,695 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | fitting pss+swap vs Time
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | sum of square deviations: 2120970.0
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | sum of deviations: 67991454.0
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | mean x: 1770734319.0
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | mean y: 2942043.4210526315
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | intersect: -56761086206.15807
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | chi2: 3.47993709258023e-05
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | current memory leak: 32.06 B/s (using 19 data points, chi2=0.00)
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | could have reported an average CPU frequency of 4210 MHz (4 samples)
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | ..............................
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | . Timing measurements:
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | . get job = 0 s
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | . initial setup = 5 s
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | . payload setup = 1 s
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | . stage-in = 0 s
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | . payload execution = 1551 s
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | . stage-out = 0 s
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | . log creation = 0 s
[2026-02-10 08:51:18] 2026-02-10 14:50:19,696 | INFO     | ..............................
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | 
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | job summary report
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | --------------------------------------------------
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | PanDA job id: 7007307864
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | task id: 48442031
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | errors: (none)
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | pilot state: finished 
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | transexitcode: 0
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | exeerrorcode: 0
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | exeerrordiag: 
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | exitcode: 0
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | exitmsg: OK
[2026-02-10 08:51:18] 2026-02-10 14:50:19,720 | INFO     | cpuconsumptiontime: 16606 s
[2026-02-10 08:51:18] 2026-02-10 14:50:19,721 | INFO     | nevents: 400
[2026-02-10 08:51:18] 2026-02-10 14:50:19,721 | INFO     | neventsw: 0
[2026-02-10 08:51:18] 2026-02-10 14:50:19,721 | INFO     | pid: 2192011
[2026-02-10 08:51:18] 2026-02-10 14:50:19,721 | INFO     | pgrp: 2192011
[2026-02-10 08:51:18] 2026-02-10 14:50:19,721 | INFO     | corecount: 12
[2026-02-10 08:51:18] 2026-02-10 14:50:19,721 | INFO     | event service: False
[2026-02-10 08:51:18] 2026-02-10 14:50:19,721 | INFO     | sizes: {0: 2282172, 10: 2282172, 1557: 2306987, 1558: 2315985, 1559: 2316235}
[2026-02-10 08:51:18] 2026-02-10 14:50:19,721 | INFO     | --------------------------------------------------
[2026-02-10 08:51:18] 2026-02-10 14:50:19,721 | INFO     | 
[2026-02-10 08:51:18] 2026-02-10 14:50:19,721 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,730 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,731 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,731 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-10 08:51:18] 2026-02-10 14:50:19,731 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,731 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 08:51:18] 2026-02-10 14:50:19,731 | INFO     | job 7007307864 has completed (purged errors)
[2026-02-10 08:51:18] 2026-02-10 14:50:19,731 | INFO     | overall cleanup function is called
[2026-02-10 08:51:18] 2026-02-10 14:50:20,738 | INFO     | --- collectZombieJob: --- 10, [2192011]
[2026-02-10 08:51:18] 2026-02-10 14:50:20,738 | INFO     | zombie collector waiting for pid 2192011
[2026-02-10 08:51:18] 2026-02-10 14:50:20,738 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 08:51:18] 2026-02-10 14:50:20,738 | INFO     | collected zombie processes
[2026-02-10 08:51:18] 2026-02-10 14:50:20,738 | INFO     | will attempt to kill all subprocesses of pid=2192011
[2026-02-10 08:51:18] 2026-02-10 14:50:20,784 | INFO     | process IDs to be killed: [2192011] (in reverse order)
[2026-02-10 08:51:18] 2026-02-10 14:50:20,808 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 08:51:18] 2026-02-10 14:50:20,808 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 08:51:18] 2026-02-10 14:50:20,810 | INFO     | did not find any defunct processes belonging to 2192011
[2026-02-10 08:51:18] 2026-02-10 14:50:20,811 | INFO     | did not find any defunct processes belonging to 2192011
[2026-02-10 08:51:18] 2026-02-10 14:50:20,811 | INFO     | ready for new job
[2026-02-10 08:51:18] 2026-02-10 14:50:20,811 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 08:51:18] 2026-02-10 14:50:20,812 | INFO     | **************************************
[2026-02-10 08:51:18] 2026-02-10 14:50:20,812 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 08:51:18] 2026-02-10 14:50:20,812 | INFO     | **************************************
[2026-02-10 08:51:18] 2026-02-10 14:50:20,812 | INFO     | 
[2026-02-10 08:51:18] 2026-02-10 14:50:20,813 | INFO     | architecture information:
[2026-02-10 08:51:18] 2026-02-10 14:50:20,813 | INFO     | executing command: cat /etc/os-release
[2026-02-10 08:51:18] 2026-02-10 14:50:20,821 | INFO     | cat /etc/os-release:
[2026-02-10 08:51:18] NAME="CentOS Linux"
[2026-02-10 08:51:18] VERSION="7 (Core)"
[2026-02-10 08:51:18] ID="centos"
[2026-02-10 08:51:18] ID_LIKE="rhel fedora"
[2026-02-10 08:51:18] VERSION_ID="7"
[2026-02-10 08:51:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 08:51:18] ANSI_COLOR="0;31"
[2026-02-10 08:51:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 08:51:18] HOME_URL="https://www.centos.org/"
[2026-02-10 08:51:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 08:51:18] 
[2026-02-10 08:51:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 08:51:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 08:51:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 08:51:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 08:51:18] 
[2026-02-10 08:51:18] 2026-02-10 14:50:20,821 | INFO     | **************************************
[2026-02-10 08:51:18] 2026-02-10 14:50:21,323 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-02-10 08:51:18] 2026-02-10 14:50:21,330 | INFO     | sufficient remaining disk space (3858310889472 B)
[2026-02-10 08:51:18] 2026-02-10 14:50:21,330 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 08:51:18] 2026-02-10 14:50:21,330 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 08:51:18] 2026-02-10 14:50:21,330 | INFO     | update_server=False
[2026-02-10 08:51:18] 2026-02-10 14:50:21,330 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 08:51:18] 2026-02-10 14:50:21,330 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 08:51:18] 2026-02-10 14:50:21,331 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 08:51:18] 2026-02-10 14:50:21,397 | INFO     | job.realtimelogging is not enabled
[2026-02-10 08:51:18] 2026-02-10 14:50:21,427 | INFO     | all data control threads have been joined
[2026-02-10 08:51:18] 2026-02-10 14:50:21,593 | INFO     | all payload control threads have been joined
[2026-02-10 08:51:18] 2026-02-10 14:50:21,738 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 08:51:18] 2026-02-10 14:50:21,738 | INFO     | aborting loop
[2026-02-10 08:51:18] 2026-02-10 14:50:21,750 | INFO     | all job control threads have been joined
[2026-02-10 08:51:18] 2026-02-10 14:50:21,843 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 08:51:18] 2026-02-10 14:50:22,335 | INFO     | [job] retrieve thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:22,335 | INFO     | [job] queue monitor thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:22,402 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:22,432 | INFO     | [data] control thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:22,493 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:22,598 | INFO     | [payload] control thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:22,733 | INFO     | [payload] validate_post thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:22,744 | INFO     | [job] job monitor thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:22,754 | INFO     | [job] control thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:23,193 | INFO     | [job] validate thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:23,274 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:23,400 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:23,406 | INFO     | [data] copytool_in thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:23,796 | INFO     | [payload] failed_post thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:23,848 | INFO     | [data] copytool_out thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:25,336 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 08:51:18] 2026-02-10 14:50:51,152 | INFO     | 1575s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-02-10 08:51:18] 2026-02-10 14:50:52,198 | INFO     | PID=2187442 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-10 08:51:18] 2026-02-10 14:50:52,198 | INFO     | .. there are 2 such processes running
[2026-02-10 08:51:18] 2026-02-10 14:50:52,198 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 08:51:18] 2026-02-10 14:50:52,198 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 08:51:18] 2026-02-10 14:50:52,198 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 08:51:18] 2026-02-10 14:51:12,967 | INFO     | [monitor] cgroup control has ended
[2026-02-10 08:51:18] 2026-02-10 14:51:13,764 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140578907940672)>', '<ExcThread(monitor, started 140578423559936)>']
[2026-02-10 08:51:18] 2026-02-10 14:51:14,304 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 08:51:18] 2026-02-10 14:51:14,304 | INFO     | [monitor] control thread has ended
[2026-02-10 08:51:18] 2026-02-10 14:51:18,780 | INFO     | all workflow threads have been joined
[2026-02-10 08:51:18] 2026-02-10 14:51:18,780 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 08:51:18] 2026-02-10 14:51:18,780 | INFO     | traces error code: 0
[2026-02-10 08:51:18] 2026-02-10 14:51:18,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 08:51:18] 2026-02-10 14:51:18,822 [wrapper] ==== pilot stdout END ====
[2026-02-10 08:51:18] 2026-02-10 14:51:18,824 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 08:51:18] 2026-02-10 14:51:18,825 [wrapper] pilotpid: 2187442
[2026-02-10 08:51:18] 2026-02-10 14:51:18,826 [wrapper] Pilot exit status: 0
[2026-02-10 08:51:18] 2026-02-10 14:51:18,830 [wrapper] pandaids: 7007307864
[2026-02-10 08:51:18] 2026-02-10 14:51:18,847 [wrapper] cleanup supervisor_pilot 2196712 2187443
[2026-02-10 08:51:18] 2026-02-10 14:51:18,849 [wrapper] Test setup, not cleaning
[2026-02-10 08:51:18] 2026-02-10 14:51:18,850 [wrapper] apfmon messages muted
[2026-02-10 08:51:18] 2026-02-10 14:51:18,851 [wrapper] ==== wrapper stdout END ====
[2026-02-10 08:51:18] 2026-02-10 14:51:18,852 [wrapper] ==== wrapper stderr END ====
[2026-02-10 08:51:18]  *** Error codes and diagnostics ***
[2026-02-10 08:51:18]     "exeErrorCode": 0,
[2026-02-10 08:51:18]     "exeErrorDiag": "",
[2026-02-10 08:51:18]     "pilotErrorCode": 0,
[2026-02-10 08:51:18]     "pilotErrorDiag": "",
[2026-02-10 08:51:18]  *** Listing of results directory ***
[2026-02-10 08:51:18] total 663916
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc    584627 Feb  9 22:15 pilot3.tar.gz
[2026-02-10 08:51:18] -rwx------. 1 boinc boinc     36322 Feb  9 22:16 runpilot2-wrapper.sh
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc      5111 Feb  9 22:18 queuedata.json
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc       100 Feb 10 08:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 08:51:18] -rwxr-xr-x. 1 boinc boinc      7986 Feb 10 08:24 run_atlas
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc       105 Feb 10 08:24 job.xml
[2026-02-10 08:51:18] drwxrwx--x. 1 boinc boinc        76 Feb 10 08:24 shared
[2026-02-10 08:51:18] -rw-r--r--. 2 boinc boinc    597950 Feb 10 08:24 input.tar.gz
[2026-02-10 08:51:18] -rw-r--r--. 2 boinc boinc 491836124 Feb 10 08:24 EVNT.48442027._000125.pool.root.1
[2026-02-10 08:51:18] -rw-r--r--. 2 boinc boinc     15845 Feb 10 08:24 start_atlas.sh
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc     10049 Feb 10 08:24 init_data.xml
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc         0 Feb 10 08:24 boinc_setup_complete
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc         0 Feb 10 08:24 boinc_lockfile
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc      2528 Feb 10 08:24 pandaJob.out
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc        63 Feb 10 08:24 setup.sh.local
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc   1009464 Feb 10 08:24 agis_schedconf.cvmfs.json
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc   1512955 Feb 10 08:24 agis_ddmendpoints.agis.ALL.json
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc       431 Feb 10 08:24 workernode_map.json
[2026-02-10 08:51:18] drwx------. 1 boinc boinc       414 Feb 10 08:24 pilot3
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc       530 Feb 10 08:50 boinc_task_state.xml
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc 182866313 Feb 10 08:50 HITS.48442031._007385.pool.root.1
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc      1035 Feb 10 08:50 memory_monitor_summary.json
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc        95 Feb 10 08:50 pilot_heartbeat.json
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc    338032 Feb 10 08:50 log.48442031._007385.job.log.tgz.1
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc      6344 Feb 10 08:50 heartbeat.json
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc      8192 Feb 10 08:51 boinc_mmap_file
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc        27 Feb 10 08:51 wrapper_checkpoint.txt
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc      5008 Feb 10 08:51 pilotlog.txt
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc    268378 Feb 10 08:51 log.48442031._007385.job.log.1
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc       357 Feb 10 08:51 output.list
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc       620 Feb 10 08:51 runtime_log
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc    624640 Feb 10 08:51 result.tar.gz
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc      9395 Feb 10 08:51 runtime_log.err
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc       649 Feb 10 08:51 A9KKDm2Lu98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmLLhKDm9Rdium.diag
[2026-02-10 08:51:18] -rw-r--r--. 1 boinc boinc     20770 Feb 10 08:51 stderr.txt
[2026-02-10 08:51:18] HITS file was successfully produced:
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc 182866313 Feb 10 08:50 shared/HITS.pool.root.1
[2026-02-10 08:51:18]  *** Contents of shared directory: ***
[2026-02-10 08:51:18] total 660108
[2026-02-10 08:51:18] -rw-r--r--. 2 boinc boinc    597950 Feb 10 08:24 input.tar.gz
[2026-02-10 08:51:18] -rw-r--r--. 2 boinc boinc 491836124 Feb 10 08:24 ATLAS.root_0
[2026-02-10 08:51:18] -rw-r--r--. 2 boinc boinc     15845 Feb 10 08:24 start_atlas.sh
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc 182866313 Feb 10 08:50 HITS.pool.root.1
[2026-02-10 08:51:18] -rw-------. 1 boinc boinc    624640 Feb 10 08:51 result.tar.gz
08:51:20 (2183588): run_atlas exited; CPU time 16612.560318
08:51:20 (2183588): called boinc_finish(0)

</stderr_txt>
]]>

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