Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:27:06 (3914809): wrapper (7.7.26015): starting
00:27:06 (3914809): wrapper: running run_atlas (--nthreads 3)
[2026-02-11 00:27:06] Arguments: --nthreads 3
[2026-02-11 00:27:06] Threads: 3
[2026-02-11 00:27:06] Checking for CVMFS
[2026-02-11 00:27:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-11 00:27:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-11 00:27:07] Running cvmfs_config stat atlas.cern.ch
[2026-02-11 00:27:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-11 00:27:07] 2.9.2.0 2962440 6651 80232 156096 2 49 27469484 36864000 0 130560 0 2731196 99.984 220969 7821 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-11 00:27:07] CVMFS is ok
[2026-02-11 00:27:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-11 00:27:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-11 00:27:07] Further information can be found at the LHC@home message board.
[2026-02-11 00:27:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-11 00:27:07] Checking for apptainer binary...
[2026-02-11 00:27:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-11 00:27:07] Running /usr/bin/apptainer --version
[2026-02-11 00:27:07] apptainer version 1.4.1-1.1
[2026-02-11 00:27:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-11 00:27:07] magicA161a
[2026-02-11 00:27:07] apptainer works
[2026-02-11 00:27:07] Set ATHENA_PROC_NUMBER=3
[2026-02-11 00:27:07] Set ATHENA_CORE_NUMBER=3
[2026-02-11 00:27:07] Starting ATLAS job with PandaID=7010004530
[2026-02-11 00:27:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-11 02:27:30]  *** The last 200 lines of the pilot log: ***
[2026-02-11 02:27:30] 2026-02-11 01:26:52,388 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-11 02:27:30] 2026-02-11 01:26:52,424 | INFO     | number of running child processes to parent process 3923270: 1
[2026-02-11 02:27:30] 2026-02-11 01:26:52,424 | INFO     | maximum number of monitored processes: 6
[2026-02-11 02:27:30] 2026-02-11 01:26:52,424 | INFO     | aborting job monitoring since job object (job id=7010004530) has expired
[2026-02-11 02:27:30] 2026-02-11 01:26:53,287 | INFO     | --- collectZombieJob: --- 10, [3923270]
[2026-02-11 02:27:30] 2026-02-11 01:26:53,287 | INFO     | zombie collector waiting for pid 3923270
[2026-02-11 02:27:30] 2026-02-11 01:26:53,287 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-11 02:27:30] 2026-02-11 01:26:53,287 | INFO     | collected zombie processes
[2026-02-11 02:27:30] 2026-02-11 01:26:53,287 | INFO     | will attempt to kill all subprocesses of pid=3923270
[2026-02-11 02:27:30] 2026-02-11 01:26:53,329 | INFO     | process IDs to be killed: [3923270] (in reverse order)
[2026-02-11 02:27:30] 2026-02-11 01:26:53,352 | WARNING  | found no corresponding commands to process id(s)
[2026-02-11 02:27:30] 2026-02-11 01:26:53,352 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-11 02:27:30] 2026-02-11 01:26:53,354 | INFO     | did not find any defunct processes belonging to 3923270
[2026-02-11 02:27:30] 2026-02-11 01:26:53,355 | INFO     | did not find any defunct processes belonging to 3923270
[2026-02-11 02:27:30] 2026-02-11 01:26:53,355 | INFO     | ready for new job
[2026-02-11 02:27:30] 2026-02-11 01:26:53,355 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-11 02:27:30] 2026-02-11 01:26:53,356 | INFO     | **************************************
[2026-02-11 02:27:30] 2026-02-11 01:26:53,356 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-11 02:27:30] 2026-02-11 01:26:53,356 | INFO     | **************************************
[2026-02-11 02:27:30] 2026-02-11 01:26:53,356 | INFO     | 
[2026-02-11 02:27:30] 2026-02-11 01:26:53,356 | INFO     | architecture information:
[2026-02-11 02:27:30] 2026-02-11 01:26:53,356 | INFO     | executing command: cat /etc/os-release
[2026-02-11 02:27:30] 2026-02-11 01:26:53,364 | INFO     | cat /etc/os-release:
[2026-02-11 02:27:30] NAME="CentOS Linux"
[2026-02-11 02:27:30] VERSION="7 (Core)"
[2026-02-11 02:27:30] ID="centos"
[2026-02-11 02:27:30] ID_LIKE="rhel fedora"
[2026-02-11 02:27:30] VERSION_ID="7"
[2026-02-11 02:27:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-11 02:27:30] ANSI_COLOR="0;31"
[2026-02-11 02:27:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-11 02:27:30] HOME_URL="https://www.centos.org/"
[2026-02-11 02:27:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-11 02:27:30] 
[2026-02-11 02:27:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-11 02:27:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-11 02:27:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-11 02:27:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-11 02:27:30] 
[2026-02-11 02:27:30] 2026-02-11 01:26:53,364 | INFO     | **************************************
[2026-02-11 02:27:30] 2026-02-11 01:26:53,867 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-11 02:27:30] 2026-02-11 01:26:53,880 | INFO     | sufficient remaining disk space (373506965504 B)
[2026-02-11 02:27:30] 2026-02-11 01:26:53,880 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-11 02:27:30] 2026-02-11 01:26:53,880 | INFO     | current server update state: UPDATING_FINAL
[2026-02-11 02:27:30] 2026-02-11 01:26:53,880 | INFO     | update_server=False
[2026-02-11 02:27:30] 2026-02-11 01:26:53,880 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-11 02:27:30] 2026-02-11 01:26:53,881 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-11 02:27:30] 2026-02-11 01:26:53,881 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-11 02:27:30] 2026-02-11 01:26:53,881 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-11 02:27:30] 2026-02-11 01:26:53,881 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-11 02:27:30] 2026-02-11 01:26:53,881 | INFO     | aborting loop
[2026-02-11 02:27:30] 2026-02-11 01:26:54,432 | INFO     | all data control threads have been joined
[2026-02-11 02:27:30] 2026-02-11 01:26:54,534 | INFO     | all job control threads have been joined
[2026-02-11 02:27:30] 2026-02-11 01:26:54,886 | INFO     | [job] retrieve thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:54,886 | INFO     | [job] queue monitor thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:54,886 | INFO     | [job] job monitor thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:54,932 | INFO     | [payload] validate_post thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:54,940 | INFO     | all payload control threads have been joined
[2026-02-11 02:27:30] 2026-02-11 01:26:55,438 | INFO     | [data] control thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:55,540 | INFO     | [job] control thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:55,704 | INFO     | [job] validate thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:55,787 | INFO     | [job] create_data_payload thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:55,822 | INFO     | [payload] validate_pre thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:55,880 | INFO     | [payload] failed_post thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:55,887 | INFO     | [data] copytool_out thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:55,940 | INFO     | [data] copytool_in thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:55,945 | INFO     | [payload] control thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:56,088 | INFO     | [payload] execute_payloads thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:26:57,888 | INFO     | [data] queue_monitor thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:27:04,875 | INFO     | job.realtimelogging is not enabled
[2026-02-11 02:27:30] 2026-02-11 01:27:05,880 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-11 02:27:30] 2026-02-11 01:27:13,255 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-02-11 02:27:30] 2026-02-11 01:27:23,468 | INFO     | [monitor] cgroup control has ended
[2026-02-11 02:27:30] 2026-02-11 01:27:24,810 | INFO     | PID=3918849 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-11 02:27:30] 2026-02-11 01:27:24,810 | INFO     | found 0 job(s) in 20 queues
[2026-02-11 02:27:30] 2026-02-11 01:27:24,810 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-11 02:27:30] 2026-02-11 01:27:24,810 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-11 02:27:30] 2026-02-11 01:27:25,496 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140446928516928)>', '<ExcThread(monitor, started 140446654547712)>']
[2026-02-11 02:27:30] 2026-02-11 01:27:25,815 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-11 02:27:30] 2026-02-11 01:27:25,816 | INFO     | [monitor] control thread has ended
[2026-02-11 02:27:30] 2026-02-11 01:27:30,522 | INFO     | all workflow threads have been joined
[2026-02-11 02:27:30] 2026-02-11 01:27:30,522 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-11 02:27:30] 2026-02-11 01:27:30,523 | INFO     | traces error code: 0
[2026-02-11 02:27:30] 2026-02-11 01:27:30,523 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-11 02:27:30] 2026-02-11 01:27:30,572 [wrapper] ==== pilot stdout END ====
[2026-02-11 02:27:30] 2026-02-11 01:27:30,574 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-11 02:27:30] 2026-02-11 01:27:30,577 [wrapper] pilotpid: 3918849
[2026-02-11 02:27:30] 2026-02-11 01:27:30,579 [wrapper] Pilot exit status: 0
[2026-02-11 02:27:30] 2026-02-11 01:27:30,586 [wrapper] pandaids: 7010004530
[2026-02-11 02:27:30] 2026-02-11 01:27:30,602 [wrapper] cleanup supervisor_pilot 3928998 3918850
[2026-02-11 02:27:30] 2026-02-11 01:27:30,604 [wrapper] Test setup, not cleaning
[2026-02-11 02:27:30] 2026-02-11 01:27:30,606 [wrapper] apfmon messages muted
[2026-02-11 02:27:30] 2026-02-11 01:27:30,608 [wrapper] ==== wrapper stdout END ====
[2026-02-11 02:27:30] 2026-02-11 01:27:30,611 [wrapper] ==== wrapper stderr END ====
[2026-02-11 02:27:30]  *** Error codes and diagnostics ***
[2026-02-11 02:27:30]     "exeErrorCode": 0,
[2026-02-11 02:27:30]     "exeErrorDiag": "",
[2026-02-11 02:27:30]     "pilotErrorCode": 0,
[2026-02-11 02:27:30]     "pilotErrorDiag": "",
[2026-02-11 02:27:30]  *** Listing of results directory ***
[2026-02-11 02:27:30] total 952672
[2026-02-11 02:27:30] -rwx------ 1 boinc boinc     36322 Feb 10 06:22 runpilot2-wrapper.sh
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc      5111 Feb 10 06:25 queuedata.json
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc    584627 Feb 10 06:25 pilot3.tar.gz
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc       100 Feb 11 00:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-11 02:27:30] -rwxr-xr-x 1 boinc boinc      7986 Feb 11 00:27 run_atlas
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc       105 Feb 11 00:27 job.xml
[2026-02-11 02:27:30] -rw-r--r-- 2 boinc boinc 685963969 Feb 11 00:27 EVNT.48431094._000483.pool.root.1
[2026-02-11 02:27:30] -rw-r--r-- 2 boinc boinc    597962 Feb 11 00:27 input.tar.gz
[2026-02-11 02:27:30] -rw-r--r-- 2 boinc boinc     15845 Feb 11 00:27 start_atlas.sh
[2026-02-11 02:27:30] drwxrwx--x 2 boinc boinc      4096 Feb 11 00:27 shared
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc         0 Feb 11 00:27 boinc_setup_complete
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc      6448 Feb 11 00:27 init_data.xml
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc         0 Feb 11 00:27 boinc_lockfile
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc      2556 Feb 11 00:27 pandaJob.out
[2026-02-11 02:27:30] -rw------- 1 boinc boinc   1009657 Feb 11 00:27 agis_schedconf.cvmfs.json
[2026-02-11 02:27:30] -rw------- 1 boinc boinc   1512955 Feb 11 00:27 agis_ddmendpoints.agis.ALL.json
[2026-02-11 02:27:30] -rw------- 1 boinc boinc       427 Feb 11 00:27 workernode_map.json
[2026-02-11 02:27:30] drwx------ 5 boinc boinc      4096 Feb 11 00:27 pilot3
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc       530 Feb 11 02:26 boinc_task_state.xml
[2026-02-11 02:27:30] -rw------- 1 boinc boinc 282932920 Feb 11 02:26 HITS.48431096._021970.pool.root.1
[2026-02-11 02:27:30] -rw------- 1 boinc boinc      1018 Feb 11 02:26 memory_monitor_summary.json
[2026-02-11 02:27:30] -rw------- 1 boinc boinc        95 Feb 11 02:26 pilot_heartbeat.json
[2026-02-11 02:27:30] -rw------- 1 boinc boinc    326088 Feb 11 02:26 log.48431096._021970.job.log.tgz.1
[2026-02-11 02:27:30] -rw------- 1 boinc boinc      6315 Feb 11 02:26 heartbeat.json
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc        27 Feb 11 02:27 wrapper_checkpoint.txt
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc      8192 Feb 11 02:27 boinc_mmap_file
[2026-02-11 02:27:30] -rw------- 1 boinc boinc      4820 Feb 11 02:27 pilotlog.txt
[2026-02-11 02:27:30] -rw------- 1 boinc boinc   1031835 Feb 11 02:27 log.48431096._021970.job.log.1
[2026-02-11 02:27:30] -rw------- 1 boinc boinc       357 Feb 11 02:27 output.list
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc       620 Feb 11 02:27 runtime_log
[2026-02-11 02:27:30] -rw------- 1 boinc boinc   1372160 Feb 11 02:27 result.tar.gz
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc      8916 Feb 11 02:27 runtime_log.err
[2026-02-11 02:27:30] -rw------- 1 boinc boinc       661 Feb 11 02:27 h9rNDmZNv98n9Rq4apOajLDm4fhM0noT9bVooX4SDmmqgKDmhfNTfm.diag
[2026-02-11 02:27:30] -rw-r--r-- 1 boinc boinc     11304 Feb 11 02:27 stderr.txt
[2026-02-11 02:27:30] HITS file was successfully produced:
[2026-02-11 02:27:30] -rw------- 1 boinc boinc 282932920 Feb 11 02:26 shared/HITS.pool.root.1
[2026-02-11 02:27:30]  *** Contents of shared directory: ***
[2026-02-11 02:27:30] total 948140
[2026-02-11 02:27:30] -rw-r--r-- 2 boinc boinc 685963969 Feb 11 00:27 ATLAS.root_0
[2026-02-11 02:27:30] -rw-r--r-- 2 boinc boinc    597962 Feb 11 00:27 input.tar.gz
[2026-02-11 02:27:30] -rw-r--r-- 2 boinc boinc     15845 Feb 11 00:27 start_atlas.sh
[2026-02-11 02:27:30] -rw------- 1 boinc boinc 282932920 Feb 11 02:26 HITS.pool.root.1
[2026-02-11 02:27:30] -rw------- 1 boinc boinc   1372160 Feb 11 02:27 result.tar.gz
02:27:32 (3914809): run_atlas exited; CPU time 20703.601432
02:27:32 (3914809): called boinc_finish(0)

</stderr_txt>
]]>

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