Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:08:55 (13259): wrapper (7.7.26015): starting
03:08:55 (13259): wrapper: running run_atlas (--nthreads 8)
[2026-02-10 03:08:55] Arguments: --nthreads 8
[2026-02-10 03:08:55] Threads: 8
[2026-02-10 03:08:55] Checking for CVMFS
[2026-02-10 03:08:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 03:08:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 03:08:55] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 03:08:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 03:08:56] 2.11.2.0 2831 152234 97032 156081 1 52 17774988 20275201 1 130560 0 34184962 99.786 11364476 29107 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-10 03:08:56] CVMFS is ok
[2026-02-10 03:08:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 03:08:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 03:08:56] Further information can be found at the LHC@home message board.
[2026-02-10 03:08:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 03:08:56] Checking for apptainer binary...
[2026-02-10 03:08:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 03:08:56] Running /usr/bin/apptainer --version
[2026-02-10 03:08:56] apptainer version 1.3.2-1.el7
[2026-02-10 03:08:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 03:08:57] c-204-31.aglt2.org
[2026-02-10 03:08:57] apptainer works
[2026-02-10 03:08:57] Set ATHENA_PROC_NUMBER=8
[2026-02-10 03:08:57] Set ATHENA_CORE_NUMBER=8
[2026-02-10 03:08:57] Starting ATLAS job with PandaID=6995182065
[2026-02-10 03:08:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:48:23 (5596): wrapper (7.7.26015): starting
03:48:23 (5596): wrapper: running run_atlas (--nthreads 8)
[2026-02-10 03:48:23] Arguments: --nthreads 8
[2026-02-10 03:48:23] Threads: 8
[2026-02-10 03:48:23] This job has been restarted, cleaning up previous attempt
[2026-02-10 03:48:23] Checking for CVMFS
[2026-02-10 03:48:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 03:48:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 03:48:24] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 03:48:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 03:48:24] 2.11.2.0 2831 152274 100252 156082 2 13 17828815 20275200 1 130560 0 34235592 99.786 11368330 29109 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-10 03:48:24] CVMFS is ok
[2026-02-10 03:48:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 03:48:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 03:48:24] Further information can be found at the LHC@home message board.
[2026-02-10 03:48:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 03:48:24] Checking for apptainer binary...
[2026-02-10 03:48:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 03:48:24] Running /usr/bin/apptainer --version
[2026-02-10 03:48:24] apptainer version 1.3.2-1.el7
[2026-02-10 03:48:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 03:48:25] c-204-31.aglt2.org
[2026-02-10 03:48:25] apptainer works
[2026-02-10 03:48:25] Set ATHENA_PROC_NUMBER=8
[2026-02-10 03:48:25] Set ATHENA_CORE_NUMBER=8
[2026-02-10 03:48:25] Starting ATLAS job with PandaID=6995182065
[2026-02-10 03:48:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 05:49:01]  *** The last 200 lines of the pilot log: ***
[2026-02-10 05:49:01] 2026-02-10 10:48:10,796 | INFO     | job 6995182065 has state=finished
[2026-02-10 05:49:01] 2026-02-10 10:48:10,797 | INFO     | preparing for final server update for job 6995182065 in state='finished'
[2026-02-10 05:49:01] 2026-02-10 10:48:10,797 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6995182065/jobReport.json
[2026-02-10 05:49:01] 2026-02-10 10:48:10,802 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-10 05:49:01] 2026-02-10 10:48:10,802 | INFO     | this job has now completed (state=finished)
[2026-02-10 05:49:01] 2026-02-10 10:48:10,802 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-10 05:49:01] 2026-02-10 10:48:10,802 | INFO     | log transfer has been attempted: DONE
[2026-02-10 05:49:01] 2026-02-10 10:48:10,802 | INFO     | job 6995182065 has finished - writing final server update
[2026-02-10 05:49:01] 2026-02-10 10:48:10,803 | INFO     | total number of processed events: 400 (read)
[2026-02-10 05:49:01] 2026-02-10 10:48:10,805 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6995182065/memory_monitor_summary.json (trf name=prmon)
[2026-02-10 05:49:01] 2026-02-10 10:48:10,805 | INFO     | extracted standard info from prmon json
[2026-02-10 05:49:01] 2026-02-10 10:48:10,805 | INFO     | extracted standard memory fields from prmon json
[2026-02-10 05:49:01] 2026-02-10 10:48:10,806 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-10 05:49:01] 2026-02-10 10:48:10,806 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-10 05:49:01] 2026-02-10 10:48:10,806 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-10 05:49:01] 2026-02-10 10:48:10,808 | INFO     | fitting pss+swap vs Time
[2026-02-10 05:49:01] 2026-02-10 10:48:10,809 | INFO     | sum of square deviations: 496597218.0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,809 | INFO     | sum of deviations: 5754845957.000003
[2026-02-10 05:49:01] 2026-02-10 10:48:10,810 | INFO     | mean x: 1770716888.0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,810 | INFO     | mean y: 2511547.1025641025
[2026-02-10 05:49:01] 2026-02-10 10:48:10,810 | INFO     | intersect: -20517544857.841743
[2026-02-10 05:49:01] 2026-02-10 10:48:10,810 | INFO     | chi2: 1.5843864125524425
[2026-02-10 05:49:01] 2026-02-10 10:48:10,810 | INFO     | sum of square deviations: 435610028.0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,811 | INFO     | sum of deviations: 5650496856.0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,811 | INFO     | mean x: 1770716735.5
[2026-02-10 05:49:01] 2026-02-10 10:48:10,811 | INFO     | mean y: 2511286.339285714
[2026-02-10 05:49:01] 2026-02-10 10:48:10,811 | INFO     | intersect: -22966265150.573536
[2026-02-10 05:49:01] 2026-02-10 10:48:10,812 | INFO     | chi2: 1.5869775107681487
[2026-02-10 05:49:01] 2026-02-10 10:48:10,812 | INFO     | current chi2=1.5869775107681487 (change=-0.16353953777803432 %)
[2026-02-10 05:49:01] 2026-02-10 10:48:10,812 | INFO     | right removable region: 111
[2026-02-10 05:49:01] 2026-02-10 10:48:10,812 | INFO     | sum of square deviations: 435610028.0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,813 | INFO     | sum of deviations: -11538513559.999998
[2026-02-10 05:49:01] 2026-02-10 10:48:10,813 | INFO     | mean x: 1770717040.5
[2026-02-10 05:49:01] 2026-02-10 10:48:10,813 | INFO     | mean y: 2553915.660714286
[2026-02-10 05:49:01] 2026-02-10 10:48:10,813 | INFO     | intersect: 46905612315.253654
[2026-02-10 05:49:01] 2026-02-10 10:48:10,813 | INFO     | chi2: 0.11680929345821753
[2026-02-10 05:49:01] 2026-02-10 10:48:10,813 | INFO     | current chi2=0.11680929345821753 (change=92.62747442588592 %)
[2026-02-10 05:49:01] 2026-02-10 10:48:10,814 | INFO     | sum of square deviations: 379832238.0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,814 | INFO     | sum of deviations: -10600999253.0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,815 | INFO     | mean x: 1770717193.0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,815 | INFO     | mean y: 2551190.9345794395
[2026-02-10 05:49:01] 2026-02-10 10:48:10,815 | INFO     | intersect: 49422715574.8415
[2026-02-10 05:49:01] 2026-02-10 10:48:10,815 | INFO     | chi2: 0.09945435060331162
[2026-02-10 05:49:01] 2026-02-10 10:48:10,815 | INFO     | current chi2=0.09945435060331162 (change=14.857501780124831 %)
[2026-02-10 05:49:01] 2026-02-10 10:48:10,815 | INFO     | left removable region: 20
[2026-02-10 05:49:01] 2026-02-10 10:48:10,816 | INFO     | sum of square deviations: 233641590.0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,816 | INFO     | sum of deviations: -2908033236.0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,816 | INFO     | mean x: 1770717315.0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,816 | INFO     | mean y: 2528082.3296703296
[2026-02-10 05:49:01] 2026-02-10 10:48:10,816 | INFO     | intersect: 22041861077.71239
[2026-02-10 05:49:01] 2026-02-10 10:48:10,817 | INFO     | chi2: 0.053031103108242376
[2026-02-10 05:49:01] 2026-02-10 10:48:10,817 | INFO     | current memory leak: -12.45 B/s (using 91 data points, chi2=0.05)
[2026-02-10 05:49:01] 2026-02-10 10:48:10,817 | INFO     | could have reported an average CPU frequency of 1729 MHz (7 samples)
[2026-02-10 05:49:01] 2026-02-10 10:48:10,817 | INFO     | ..............................
[2026-02-10 05:49:01] 2026-02-10 10:48:10,817 | INFO     | . Timing measurements:
[2026-02-10 05:49:01] 2026-02-10 10:48:10,818 | INFO     | . get job = 0 s
[2026-02-10 05:49:01] 2026-02-10 10:48:10,818 | INFO     | . initial setup = 1 s
[2026-02-10 05:49:01] 2026-02-10 10:48:10,818 | INFO     | . payload setup = 8 s
[2026-02-10 05:49:01] 2026-02-10 10:48:10,818 | INFO     | . stage-in = 0 s
[2026-02-10 05:49:01] 2026-02-10 10:48:10,818 | INFO     | . payload execution = 7140 s
[2026-02-10 05:49:01] 2026-02-10 10:48:10,818 | INFO     | . stage-out = 0 s
[2026-02-10 05:49:01] 2026-02-10 10:48:10,818 | INFO     | . log creation = 0 s
[2026-02-10 05:49:01] 2026-02-10 10:48:10,818 | INFO     | ..............................
[2026-02-10 05:49:01] 2026-02-10 10:48:10,908 | INFO     | 
[2026-02-10 05:49:01] 2026-02-10 10:48:10,908 | INFO     | job summary report
[2026-02-10 05:49:01] 2026-02-10 10:48:10,908 | INFO     | --------------------------------------------------
[2026-02-10 05:49:01] 2026-02-10 10:48:10,908 | INFO     | PanDA job id: 6995182065
[2026-02-10 05:49:01] 2026-02-10 10:48:10,909 | INFO     | task id: 48310749
[2026-02-10 05:49:01] 2026-02-10 10:48:10,909 | INFO     | errors: (none)
[2026-02-10 05:49:01] 2026-02-10 10:48:10,909 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-10 05:49:01] 2026-02-10 10:48:10,909 | INFO     | pilot state: finished 
[2026-02-10 05:49:01] 2026-02-10 10:48:10,909 | INFO     | transexitcode: 0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,909 | INFO     | exeerrorcode: 0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,909 | INFO     | exeerrordiag: 
[2026-02-10 05:49:01] 2026-02-10 10:48:10,910 | INFO     | exitcode: 0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,910 | INFO     | exitmsg: OK
[2026-02-10 05:49:01] 2026-02-10 10:48:10,910 | INFO     | cpuconsumptiontime: 53044 s
[2026-02-10 05:49:01] 2026-02-10 10:48:10,910 | INFO     | nevents: 400
[2026-02-10 05:49:01] 2026-02-10 10:48:10,910 | INFO     | neventsw: 0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,910 | INFO     | pid: 12181
[2026-02-10 05:49:01] 2026-02-10 10:48:10,910 | INFO     | pgrp: 12181
[2026-02-10 05:49:01] 2026-02-10 10:48:10,910 | INFO     | corecount: 8
[2026-02-10 05:49:01] 2026-02-10 10:48:10,911 | INFO     | event service: False
[2026-02-10 05:49:01] 2026-02-10 10:48:10,911 | INFO     | sizes: {0: 2282606, 1: 2283067, 12: 2283067, 7152: 2310315, 7153: 2310314, 7154: 2319552, 7155: 2319690}
[2026-02-10 05:49:01] 2026-02-10 10:48:10,911 | INFO     | --------------------------------------------------
[2026-02-10 05:49:01] 2026-02-10 10:48:10,911 | INFO     | 
[2026-02-10 05:49:01] 2026-02-10 10:48:10,911 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-10 05:49:01] 2026-02-10 10:48:10,942 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,942 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,942 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,943 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,943 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,943 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,943 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,943 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,943 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,944 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,944 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,944 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,944 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,944 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,945 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,945 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,945 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,945 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-10 05:49:01] 2026-02-10 10:48:10,945 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,946 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 05:49:01] 2026-02-10 10:48:10,946 | INFO     | job 6995182065 has completed (purged errors)
[2026-02-10 05:49:01] 2026-02-10 10:48:10,946 | INFO     | overall cleanup function is called
[2026-02-10 05:49:01] 2026-02-10 10:48:11,953 | INFO     | --- collectZombieJob: --- 10, [12181]
[2026-02-10 05:49:01] 2026-02-10 10:48:11,953 | INFO     | zombie collector waiting for pid 12181
[2026-02-10 05:49:01] 2026-02-10 10:48:11,953 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 05:49:01] 2026-02-10 10:48:11,953 | INFO     | collected zombie processes
[2026-02-10 05:49:01] 2026-02-10 10:48:11,954 | INFO     | will attempt to kill all subprocesses of pid=12181
[2026-02-10 05:49:01] 2026-02-10 10:48:12,045 | INFO     | process IDs to be killed: [12181] (in reverse order)
[2026-02-10 05:49:01] 2026-02-10 10:48:12,107 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 05:49:01] 2026-02-10 10:48:12,107 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 05:49:01] 2026-02-10 10:48:12,111 | INFO     | did not find any defunct processes belonging to 12181
[2026-02-10 05:49:01] 2026-02-10 10:48:12,115 | INFO     | did not find any defunct processes belonging to 12181
[2026-02-10 05:49:01] 2026-02-10 10:48:12,115 | INFO     | ready for new job
[2026-02-10 05:49:01] 2026-02-10 10:48:12,115 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 05:49:01] 2026-02-10 10:48:12,118 | INFO     | **************************************
[2026-02-10 05:49:01] 2026-02-10 10:48:12,118 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-10 05:49:01] 2026-02-10 10:48:12,118 | INFO     | **************************************
[2026-02-10 05:49:01] 2026-02-10 10:48:12,118 | INFO     | 
[2026-02-10 05:49:01] 2026-02-10 10:48:12,119 | INFO     | architecture information:
[2026-02-10 05:49:01] 2026-02-10 10:48:12,119 | INFO     | executing command: cat /etc/os-release
[2026-02-10 05:49:01] 2026-02-10 10:48:12,139 | INFO     | cat /etc/os-release:
[2026-02-10 05:49:01] NAME="CentOS Linux"
[2026-02-10 05:49:01] VERSION="7 (Core)"
[2026-02-10 05:49:01] ID="centos"
[2026-02-10 05:49:01] ID_LIKE="rhel fedora"
[2026-02-10 05:49:01] VERSION_ID="7"
[2026-02-10 05:49:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 05:49:01] ANSI_COLOR="0;31"
[2026-02-10 05:49:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 05:49:01] HOME_URL="https://www.centos.org/"
[2026-02-10 05:49:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 05:49:01] 
[2026-02-10 05:49:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 05:49:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 05:49:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 05:49:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 05:49:01] 
[2026-02-10 05:49:01] 2026-02-10 10:48:12,140 | INFO     | **************************************
[2026-02-10 05:49:01] 2026-02-10 10:48:12,643 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-10 05:49:01] 2026-02-10 10:48:12,667 | INFO     | sufficient remaining disk space (17989369856 B)
[2026-02-10 05:49:01] 2026-02-10 10:48:12,667 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 05:49:01] 2026-02-10 10:48:12,668 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 05:49:01] 2026-02-10 10:48:12,668 | INFO     | update_server=False
[2026-02-10 05:49:01] 2026-02-10 10:48:12,668 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 05:49:01] 2026-02-10 10:48:12,668 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 05:49:01] 2026-02-10 10:48:12,669 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 05:49:01] 2026-02-10 10:48:12,816 | INFO     | all data control threads have been joined
[2026-02-10 05:49:01] 2026-02-10 10:48:13,045 | INFO     | all payload control threads have been joined
[2026-02-10 05:49:01] 2026-02-10 10:48:13,127 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-10 05:49:01] 2026-02-10 10:48:13,127 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-10 05:49:01] 2026-02-10 10:48:13,134 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 05:49:01] 2026-02-10 10:48:13,134 | INFO     | will abort loop
[2026-02-10 05:49:01] 2026-02-10 10:48:13,674 | INFO     | [job] retrieve thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:13,675 | INFO     | [job] queue monitor thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:13,686 | INFO     | [job] validate thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:13,822 | INFO     | [data] control thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:13,883 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:14,050 | INFO     | [payload] control thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:14,114 | INFO     | all job control threads have been joined
[2026-02-10 05:49:01] 2026-02-10 10:48:14,140 | INFO     | [job] job monitor thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:14,178 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:14,180 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:14,238 | INFO     | [payload] validate_post thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:14,411 | INFO     | [data] copytool_in thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:14,674 | INFO     | [data] copytool_out thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:14,684 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:14,881 | INFO     | [payload] failed_post thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:15,119 | INFO     | [job] control thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:15,505 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 05:49:01] 2026-02-10 10:48:19,512 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 05:49:01] 2026-02-10 10:48:42,437 | INFO     | PID=9640 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-10 05:49:01] 2026-02-10 10:48:42,438 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 05:49:01] 2026-02-10 10:48:42,438 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 05:49:01] 2026-02-10 10:48:42,438 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 05:49:01] 2026-02-10 10:48:42,925 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-02-10 05:49:01] 2026-02-10 10:48:55,188 | INFO     | [monitor] cgroup control has ended
[2026-02-10 05:49:01] 2026-02-10 10:48:56,445 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140586033264448)>', '<ExcThread(monitor, started 140585000228608)>']
[2026-02-10 05:49:01] 2026-02-10 10:48:56,507 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 05:49:01] 2026-02-10 10:48:56,508 | INFO     | [monitor] control thread has ended
[2026-02-10 05:49:01] 2026-02-10 10:49:01,471 | INFO     | all workflow threads have been joined
[2026-02-10 05:49:01] 2026-02-10 10:49:01,471 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 05:49:01] 2026-02-10 10:49:01,478 | INFO     | traces error code: 0
[2026-02-10 05:49:01] 2026-02-10 10:49:01,478 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 05:49:01] 2026-02-10 10:49:01,603 [wrapper] ==== pilot stdout END ====
[2026-02-10 05:49:01] 2026-02-10 10:49:01,607 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 05:49:01] 2026-02-10 10:49:01,612 [wrapper] pilotpid: 9640
[2026-02-10 05:49:01] 2026-02-10 10:49:01,617 [wrapper] Pilot exit status: 0
[2026-02-10 05:49:01] 2026-02-10 10:49:01,635 [wrapper] pandaids: 6995182065 6995182065
[2026-02-10 05:49:01] 2026-02-10 10:49:01,686 [wrapper] cleanup supervisor_pilot 28813 9641
[2026-02-10 05:49:01] 2026-02-10 10:49:01,691 [wrapper] Test setup, not cleaning
[2026-02-10 05:49:01] 2026-02-10 10:49:01,696 [wrapper] apfmon messages muted
[2026-02-10 05:49:01] 2026-02-10 10:49:01,701 [wrapper] ==== wrapper stdout END ====
[2026-02-10 05:49:01] 2026-02-10 10:49:01,706 [wrapper] ==== wrapper stderr END ====
[2026-02-10 05:49:01]  *** Error codes and diagnostics ***
[2026-02-10 05:49:01]     "exeErrorCode": 0,
[2026-02-10 05:49:01]     "exeErrorDiag": "",
[2026-02-10 05:49:01]     "pilotErrorCode": 0,
[2026-02-10 05:49:01]     "pilotErrorDiag": "",
[2026-02-10 05:49:01]  *** Listing of results directory ***
[2026-02-10 05:49:01] total 1156504
[2026-02-10 05:49:01] drwx------ 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-02-10 05:49:01] -rw-r--r-- 1 boincer umatlas    584422 Feb  3 22:08 pilot3.tar.gz
[2026-02-10 05:49:01] -rwx------ 1 boincer umatlas     36322 Feb  3 22:08 runpilot2-wrapper.sh
[2026-02-10 05:49:01] -rw-r--r-- 1 boincer umatlas      5111 Feb  3 22:09 queuedata.json
[2026-02-10 05:49:01] -rw-r--r-- 1 boincer umatlas       100 Feb 10 03:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 05:49:01] -rwxr-xr-x 1 boincer umatlas      7986 Feb 10 03:08 run_atlas
[2026-02-10 05:49:01] -rw-r--r-- 1 boincer umatlas       105 Feb 10 03:08 job.xml
[2026-02-10 05:49:01] -rw-r--r-- 3 boincer umatlas 496318361 Feb 10 03:08 EVNT.48310747._000093.pool.root.1
[2026-02-10 05:49:01] -rw-r--r-- 3 boincer umatlas 496318361 Feb 10 03:08 ATLAS.root_0
[2026-02-10 05:49:01] -rw-r--r-- 2 boincer umatlas     15845 Feb 10 03:08 start_atlas.sh
[2026-02-10 05:49:01] drwxrwx--x 2 boincer umatlas      4096 Feb 10 03:08 shared
[2026-02-10 05:49:01] -rw-r--r-- 2 boincer umatlas    597764 Feb 10 03:08 input.tar.gz
[2026-02-10 05:49:01] -rw-r--r-- 1 boincer umatlas         0 Feb 10 03:08 boinc_lockfile
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas   1513144 Feb 10 03:09 agis_ddmendpoints.agis.ALL.json
[2026-02-10 05:49:01] -rw-r--r-- 1 boincer umatlas      2523 Feb 10 03:48 pandaJob.out
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas        57 Feb 10 03:48 setup.sh.local
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas   1009488 Feb 10 03:48 agis_schedconf.cvmfs.json
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas       431 Feb 10 03:48 workernode_map.json
[2026-02-10 05:49:01] -rw-r--r-- 1 boincer umatlas      5909 Feb 10 05:45 init_data.xml
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas 184854229 Feb 10 05:47 HITS.48310749._004661.pool.root.1
[2026-02-10 05:49:01] -rw-r--r-- 1 boincer umatlas       530 Feb 10 05:47 boinc_task_state.xml
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas      1048 Feb 10 05:48 memory_monitor_summary.json
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas    397565 Feb 10 05:48 log.48310749._004661.job.log.tgz.1
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas      6400 Feb 10 05:48 heartbeat.json
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas        96 Feb 10 05:48 pilot_heartbeat.json
[2026-02-10 05:49:01] -rw-r--r-- 1 boincer umatlas      8192 Feb 10 05:49 boinc_mmap_file
[2026-02-10 05:49:01] -rw-r--r-- 1 boincer umatlas        27 Feb 10 05:49 wrapper_checkpoint.txt
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas      4927 Feb 10 05:49 pilotlog.txt
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas   1010855 Feb 10 05:49 log.48310749._004661.job.log.1
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas       357 Feb 10 05:49 output.list
[2026-02-10 05:49:01] -rw-r--r-- 1 boincer umatlas       620 Feb 10 05:49 runtime_log
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas   1423360 Feb 10 05:49 result.tar.gz
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas       783 Feb 10 05:49 UEnNDmHRi78nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm0WWKDmcRtVTn.diag
[2026-02-10 05:49:01] -rw-r--r-- 1 boincer umatlas      9426 Feb 10 05:49 runtime_log.err
[2026-02-10 05:49:01] -rw-r--r-- 1 boincer umatlas     23367 Feb 10 05:49 stderr.txt
[2026-02-10 05:49:01] HITS file was successfully produced:
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas 184854229 Feb 10 05:47 shared/HITS.pool.root.1
[2026-02-10 05:49:01]  *** Contents of shared directory: ***
[2026-02-10 05:49:01] total 667212
[2026-02-10 05:49:01] -rw-r--r-- 3 boincer umatlas 496318361 Feb 10 03:08 ATLAS.root_0
[2026-02-10 05:49:01] -rw-r--r-- 2 boincer umatlas     15845 Feb 10 03:08 start_atlas.sh
[2026-02-10 05:49:01] -rw-r--r-- 2 boincer umatlas    597764 Feb 10 03:08 input.tar.gz
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas 184854229 Feb 10 05:47 HITS.pool.root.1
[2026-02-10 05:49:01] -rw------- 1 boincer umatlas   1423360 Feb 10 05:49 result.tar.gz
05:49:03 (5596): run_atlas exited; CPU time 53008.399937
05:49:03 (5596): called boinc_finish(0)

</stderr_txt>
]]>

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