Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:06:21 (25710): wrapper (7.7.26015): starting
02:06:21 (25710): wrapper: running run_atlas (--nthreads 12)
[2026-02-10 02:06:21] Arguments: --nthreads 12
[2026-02-10 02:06:21] Threads: 12
[2026-02-10 02:06:21] Checking for CVMFS
[2026-02-10 02:06:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 02:06:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 02:06:21] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 02:06:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 02:06:21] 2.11.2.0 3165 182420 97840 156080 3 9 13092065 20275200 1 130560 0 74008089 99.908 10360622 35363 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-10 02:06:21] CVMFS is ok
[2026-02-10 02:06:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 02:06:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 02:06:21] Further information can be found at the LHC@home message board.
[2026-02-10 02:06:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 02:06:21] Checking for apptainer binary...
[2026-02-10 02:06:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 02:06:21] Running /usr/bin/apptainer --version
[2026-02-10 02:06:21] apptainer version 1.3.2-1.el7
[2026-02-10 02:06:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 02:06:23] c-115-40.aglt2.org
[2026-02-10 02:06:23] apptainer works
[2026-02-10 02:06:23] Set ATHENA_PROC_NUMBER=12
[2026-02-10 02:06:23] Set ATHENA_CORE_NUMBER=12
[2026-02-10 02:06:23] Starting ATLAS job with PandaID=7007173000
[2026-02-10 02:06:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 03:12:16]  *** The last 200 lines of the pilot log: ***
[2026-02-10 03:12:16]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-10 03:12:16]  is_altstaged=None
[2026-02-10 03:12:16]  is_tar=False
[2026-02-10 03:12:16]  lfn=log.48318010._016174.job.log.tgz.1
[2026-02-10 03:12:16]  mtime=0
[2026-02-10 03:12:16]  protocol_id=None
[2026-02-10 03:12:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-10 03:12:16]  replicas=None
[2026-02-10 03:12:16]  scope=mc23_13p6TeV
[2026-02-10 03:12:16]  status=None
[2026-02-10 03:12:16]  status_code=0
[2026-02-10 03:12:16]  storage_token=
[2026-02-10 03:12:16]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7007173000/log.48318010._016174.job.log.tgz.1
[2026-02-10 03:12:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4b/5a/log.48318010._016174.job.log.tgz.1
[2026-02-10 03:12:16]  workdir=None
[2026-02-10 03:12:16] ]
[2026-02-10 03:12:16] 2026-02-10 08:11:41,930 | INFO     | transferring file log.48318010._016174.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7007173000/log.48318010._016174.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-10 03:12:16] 2026-02-10 08:11:41,930 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7007173000/log.48318010._016174.job.log.tgz.1 /tmp/boinchome/slots/0/log.48318010._016174.job
[2026-02-10 03:12:16] 2026-02-10 08:11:41,951 | INFO     | adding to output.list: log.48318010._016174.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4b/5a/log.48318010._016174.job.log.tg
[2026-02-10 03:12:16] 2026-02-10 08:11:41,952 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-10 03:12:16] 2026-02-10 08:11:41,952 | INFO     | summary of transferred files:
[2026-02-10 03:12:16] 2026-02-10 08:11:41,952 | INFO     |  -- lfn=log.48318010._016174.job.log.tgz.1, status_code=0, status=transferred
[2026-02-10 03:12:16] 2026-02-10 08:11:41,952 | INFO     | stage-out finished correctly
[2026-02-10 03:12:16] 2026-02-10 08:11:42,028 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-10 03:12:16] 2026-02-10 08:11:42,947 | INFO     | time since job start (3900s) is within the limit (349056.0s)
[2026-02-10 03:12:16] 2026-02-10 08:11:43,124 | WARNING  | process 1349 can no longer be monitored (due to stat problems) - aborting
[2026-02-10 03:12:16] 2026-02-10 08:11:43,125 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7007173000/memory_monitor_summary.json (trf name=prmon)
[2026-02-10 03:12:16] 2026-02-10 08:11:43,206 | INFO     | number of running child processes to parent process 1349: 1
[2026-02-10 03:12:16] 2026-02-10 08:11:43,206 | INFO     | maximum number of monitored processes: 6
[2026-02-10 03:12:16] 2026-02-10 08:11:43,274 | INFO     | job 7007173000 has state=finished
[2026-02-10 03:12:16] 2026-02-10 08:11:43,274 | INFO     | preparing for final server update for job 7007173000 in state='finished'
[2026-02-10 03:12:16] 2026-02-10 08:11:43,275 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7007173000/jobReport.json
[2026-02-10 03:12:16] 2026-02-10 08:11:43,277 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-10 03:12:16] 2026-02-10 08:11:43,277 | INFO     | this job has now completed (state=finished)
[2026-02-10 03:12:16] 2026-02-10 08:11:43,278 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-10 03:12:16] 2026-02-10 08:11:43,278 | INFO     | log transfer has been attempted: DONE
[2026-02-10 03:12:16] 2026-02-10 08:11:43,278 | INFO     | job 7007173000 has finished - writing final server update
[2026-02-10 03:12:16] 2026-02-10 08:11:43,278 | INFO     | total number of processed events: 400 (read)
[2026-02-10 03:12:16] 2026-02-10 08:11:43,281 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7007173000/memory_monitor_summary.json (trf name=prmon)
[2026-02-10 03:12:16] 2026-02-10 08:11:43,281 | INFO     | extracted standard info from prmon json
[2026-02-10 03:12:16] 2026-02-10 08:11:43,281 | INFO     | extracted standard memory fields from prmon json
[2026-02-10 03:12:16] 2026-02-10 08:11:43,282 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-10 03:12:16] 2026-02-10 08:11:43,282 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-10 03:12:16] 2026-02-10 08:11:43,282 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-10 03:12:16] 2026-02-10 08:11:43,283 | INFO     | fitting pss+swap vs Time
[2026-02-10 03:12:16] 2026-02-10 08:11:43,283 | INFO     | sum of square deviations: 57407588.0
[2026-02-10 03:12:16] 2026-02-10 08:11:43,284 | INFO     | sum of deviations: 74719144.00000003
[2026-02-10 03:12:16] 2026-02-10 08:11:43,284 | INFO     | mean x: 1770709239.0
[2026-02-10 03:12:16] 2026-02-10 08:11:43,284 | INFO     | mean y: 2702682.2280701753
[2026-02-10 03:12:16] 2026-02-10 08:11:43,284 | INFO     | intersect: -2301973114.4797006
[2026-02-10 03:12:16] 2026-02-10 08:11:43,284 | INFO     | chi2: 0.01165631111522686
[2026-02-10 03:12:16] 2026-02-10 08:11:43,284 | INFO     | current memory leak: 1.30 B/s (using 57 data points, chi2=0.01)
[2026-02-10 03:12:16] 2026-02-10 08:11:43,284 | INFO     | could have reported an average CPU frequency of 1729 MHz (6 samples)
[2026-02-10 03:12:16] 2026-02-10 08:11:43,285 | INFO     | ..............................
[2026-02-10 03:12:16] 2026-02-10 08:11:43,285 | INFO     | . Timing measurements:
[2026-02-10 03:12:16] 2026-02-10 08:11:43,285 | INFO     | . get job = 0 s
[2026-02-10 03:12:16] 2026-02-10 08:11:43,285 | INFO     | . initial setup = 7 s
[2026-02-10 03:12:16] 2026-02-10 08:11:43,285 | INFO     | . payload setup = 7 s
[2026-02-10 03:12:16] 2026-02-10 08:11:43,285 | INFO     | . stage-in = 0 s
[2026-02-10 03:12:16] 2026-02-10 08:11:43,285 | INFO     | . payload execution = 3876 s
[2026-02-10 03:12:16] 2026-02-10 08:11:43,285 | INFO     | . stage-out = 0 s
[2026-02-10 03:12:16] 2026-02-10 08:11:43,285 | INFO     | . log creation = 0 s
[2026-02-10 03:12:16] 2026-02-10 08:11:43,286 | INFO     | ..............................
[2026-02-10 03:12:16] 2026-02-10 08:11:43,856 | INFO     | 
[2026-02-10 03:12:16] 2026-02-10 08:11:43,857 | INFO     | job summary report
[2026-02-10 03:12:16] 2026-02-10 08:11:43,857 | INFO     | --------------------------------------------------
[2026-02-10 03:12:16] 2026-02-10 08:11:43,857 | INFO     | PanDA job id: 7007173000
[2026-02-10 03:12:16] 2026-02-10 08:11:43,857 | INFO     | task id: 48318010
[2026-02-10 03:12:16] 2026-02-10 08:11:43,857 | INFO     | errors: (none)
[2026-02-10 03:12:16] 2026-02-10 08:11:43,857 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-10 03:12:16] 2026-02-10 08:11:43,858 | INFO     | pilot state: finished 
[2026-02-10 03:12:16] 2026-02-10 08:11:43,858 | INFO     | transexitcode: 0
[2026-02-10 03:12:16] 2026-02-10 08:11:43,858 | INFO     | exeerrorcode: 0
[2026-02-10 03:12:16] 2026-02-10 08:11:43,858 | INFO     | exeerrordiag: 
[2026-02-10 03:12:16] 2026-02-10 08:11:43,858 | INFO     | exitcode: 0
[2026-02-10 03:12:16] 2026-02-10 08:11:43,858 | INFO     | exitmsg: OK
[2026-02-10 03:12:16] 2026-02-10 08:11:43,859 | INFO     | cpuconsumptiontime: 41896 s
[2026-02-10 03:12:16] 2026-02-10 08:11:43,859 | INFO     | nevents: 400
[2026-02-10 03:12:16] 2026-02-10 08:11:43,859 | INFO     | neventsw: 0
[2026-02-10 03:12:16] 2026-02-10 08:11:43,859 | INFO     | pid: 1349
[2026-02-10 03:12:16] 2026-02-10 08:11:43,859 | INFO     | pgrp: 1349
[2026-02-10 03:12:16] 2026-02-10 08:11:43,859 | INFO     | corecount: 12
[2026-02-10 03:12:16] 2026-02-10 08:11:43,860 | INFO     | event service: False
[2026-02-10 03:12:16] 2026-02-10 08:11:43,860 | INFO     | sizes: {0: 2282888, 1: 2283122, 11: 2283122, 3887: 2308904, 3888: 2317958, 3890: 2318096}
[2026-02-10 03:12:16] 2026-02-10 08:11:43,860 | INFO     | --------------------------------------------------
[2026-02-10 03:12:16] 2026-02-10 08:11:43,860 | INFO     | 
[2026-02-10 03:12:16] 2026-02-10 08:11:43,860 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-10 03:12:16] 2026-02-10 08:11:43,883 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,884 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,884 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,884 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,884 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,885 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,885 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,885 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,885 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,885 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,885 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,886 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,886 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,886 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,886 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,886 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-10 03:12:16] 2026-02-10 08:11:43,886 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,886 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 03:12:16] 2026-02-10 08:11:43,887 | INFO     | job 7007173000 has completed (purged errors)
[2026-02-10 03:12:16] 2026-02-10 08:11:43,887 | INFO     | overall cleanup function is called
[2026-02-10 03:12:16] 2026-02-10 08:11:44,061 | INFO     | PID=29412 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-10 03:12:16] 2026-02-10 08:11:44,895 | INFO     | --- collectZombieJob: --- 10, [1349]
[2026-02-10 03:12:16] 2026-02-10 08:11:44,895 | INFO     | zombie collector waiting for pid 1349
[2026-02-10 03:12:16] 2026-02-10 08:11:44,896 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 03:12:16] 2026-02-10 08:11:44,896 | INFO     | collected zombie processes
[2026-02-10 03:12:16] 2026-02-10 08:11:44,896 | INFO     | will attempt to kill all subprocesses of pid=1349
[2026-02-10 03:12:16] 2026-02-10 08:11:44,980 | INFO     | process IDs to be killed: [1349] (in reverse order)
[2026-02-10 03:12:16] 2026-02-10 08:11:45,032 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 03:12:16] 2026-02-10 08:11:45,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 03:12:16] 2026-02-10 08:11:45,036 | INFO     | did not find any defunct processes belonging to 1349
[2026-02-10 03:12:16] 2026-02-10 08:11:45,040 | INFO     | did not find any defunct processes belonging to 1349
[2026-02-10 03:12:16] 2026-02-10 08:11:45,040 | INFO     | ready for new job
[2026-02-10 03:12:16] 2026-02-10 08:11:45,041 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 03:12:16] 2026-02-10 08:11:45,042 | INFO     | **************************************
[2026-02-10 03:12:16] 2026-02-10 08:11:45,042 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 03:12:16] 2026-02-10 08:11:45,042 | INFO     | **************************************
[2026-02-10 03:12:16] 2026-02-10 08:11:45,043 | INFO     | 
[2026-02-10 03:12:16] 2026-02-10 08:11:45,043 | INFO     | architecture information:
[2026-02-10 03:12:16] 2026-02-10 08:11:45,044 | INFO     | executing command: cat /etc/os-release
[2026-02-10 03:12:16] 2026-02-10 08:11:45,059 | INFO     | cat /etc/os-release:
[2026-02-10 03:12:16] NAME="CentOS Linux"
[2026-02-10 03:12:16] VERSION="7 (Core)"
[2026-02-10 03:12:16] ID="centos"
[2026-02-10 03:12:16] ID_LIKE="rhel fedora"
[2026-02-10 03:12:16] VERSION_ID="7"
[2026-02-10 03:12:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 03:12:16] ANSI_COLOR="0;31"
[2026-02-10 03:12:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 03:12:16] HOME_URL="https://www.centos.org/"
[2026-02-10 03:12:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 03:12:16] 
[2026-02-10 03:12:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 03:12:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 03:12:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 03:12:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 03:12:16] 
[2026-02-10 03:12:16] 2026-02-10 08:11:45,060 | INFO     | **************************************
[2026-02-10 03:12:16] 2026-02-10 08:11:45,563 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-10 03:12:16] 2026-02-10 08:11:45,596 | INFO     | sufficient remaining disk space (18141413376 B)
[2026-02-10 03:12:16] 2026-02-10 08:11:45,596 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 03:12:16] 2026-02-10 08:11:45,597 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 03:12:16] 2026-02-10 08:11:45,597 | INFO     | update_server=False
[2026-02-10 03:12:16] 2026-02-10 08:11:45,597 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 03:12:16] 2026-02-10 08:11:45,597 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 03:12:16] 2026-02-10 08:11:45,709 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-10 03:12:16] 2026-02-10 08:11:45,709 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-10 03:12:16] 2026-02-10 08:11:45,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 03:12:16] 2026-02-10 08:11:45,710 | INFO     | will abort loop
[2026-02-10 03:12:16] 2026-02-10 08:11:46,555 | INFO     | all data control threads have been joined
[2026-02-10 03:12:16] 2026-02-10 08:11:46,602 | INFO     | [job] retrieve thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:46,655 | INFO     | [payload] validate_post thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:46,715 | INFO     | [job] job monitor thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:46,762 | INFO     | [data] copytool_in thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:46,764 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:46,963 | INFO     | all payload control threads have been joined
[2026-02-10 03:12:16] 2026-02-10 08:11:47,143 | INFO     | [payload] failed_post thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:47,224 | INFO     | all job control threads have been joined
[2026-02-10 03:12:16] 2026-02-10 08:11:47,560 | INFO     | [data] control thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:47,603 | INFO     | [data] copytool_out thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:47,785 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:47,845 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:47,845 | INFO     | [job] validate thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:47,968 | INFO     | [payload] control thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:48,031 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:48,108 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 03:12:16] 2026-02-10 08:11:48,230 | INFO     | [job] control thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:48,296 | INFO     | [monitor] cgroup control has ended
[2026-02-10 03:12:16] 2026-02-10 08:11:48,368 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 03:12:16] 2026-02-10 08:11:49,373 | INFO     | [job] queue monitor thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:52,114 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 03:12:16] 2026-02-10 08:11:53,437 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140491327465280)>', '<ExcThread(monitor, started 140490393515776)>']
[2026-02-10 03:12:16] 2026-02-10 08:11:58,442 | INFO     | all workflow threads have been joined
[2026-02-10 03:12:16] 2026-02-10 08:11:58,443 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 03:12:16] 2026-02-10 08:11:58,443 | INFO     | traces error code: 0
[2026-02-10 03:12:16] 2026-02-10 08:11:58,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 03:12:16] 2026-02-10 08:12:16,255 | INFO     | PID=29412 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-10 03:12:16] 2026-02-10 08:12:16,255 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 03:12:16] 2026-02-10 08:12:16,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 03:12:16] 2026-02-10 08:12:16,256 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 03:12:16] 2026-02-10 08:12:16,256 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 03:12:16] 2026-02-10 08:12:16,256 | INFO     | [monitor] control thread has ended
[2026-02-10 03:12:16] 2026-02-10 08:12:16,351 [wrapper] ==== pilot stdout END ====
[2026-02-10 03:12:16] 2026-02-10 08:12:16,355 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 03:12:16] 2026-02-10 08:12:16,359 [wrapper] pilotpid: 29412
[2026-02-10 03:12:16] 2026-02-10 08:12:16,363 [wrapper] Pilot exit status: 0
[2026-02-10 03:12:16] 2026-02-10 08:12:16,378 [wrapper] pandaids: 7007173000
[2026-02-10 03:12:16] 2026-02-10 08:12:16,418 [wrapper] cleanup supervisor_pilot 26350 29413
[2026-02-10 03:12:16] 2026-02-10 08:12:16,422 [wrapper] Test setup, not cleaning
[2026-02-10 03:12:16] 2026-02-10 08:12:16,425 [wrapper] apfmon messages muted
[2026-02-10 03:12:16] 2026-02-10 08:12:16,429 [wrapper] ==== wrapper stdout END ====
[2026-02-10 03:12:16] 2026-02-10 08:12:16,433 [wrapper] ==== wrapper stderr END ====
[2026-02-10 03:12:16]  *** Error codes and diagnostics ***
[2026-02-10 03:12:16]     "exeErrorCode": 0,
[2026-02-10 03:12:16]     "exeErrorDiag": "",
[2026-02-10 03:12:16]     "pilotErrorCode": 0,
[2026-02-10 03:12:16]     "pilotErrorDiag": "",
[2026-02-10 03:12:16]  *** Listing of results directory ***
[2026-02-10 03:12:16] total 667888
[2026-02-10 03:12:16] -rw-r--r-- 1 boincer umatlas    584627 Feb  9 21:21 pilot3.tar.gz
[2026-02-10 03:12:16] -rwx------ 1 boincer umatlas     36322 Feb  9 21:22 runpilot2-wrapper.sh
[2026-02-10 03:12:16] -rw-r--r-- 1 boincer umatlas      5111 Feb  9 21:23 queuedata.json
[2026-02-10 03:12:16] -rw-r--r-- 1 boincer umatlas       100 Feb 10 02:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 03:12:16] -rwxr-xr-x 1 boincer umatlas      7986 Feb 10 02:06 run_atlas
[2026-02-10 03:12:16] -rw-r--r-- 1 boincer umatlas       105 Feb 10 02:06 job.xml
[2026-02-10 03:12:16] -rw-r--r-- 2 boincer umatlas 497460049 Feb 10 02:06 EVNT.48318008._000293.pool.root.1
[2026-02-10 03:12:16] drwxrwx--x 2 boincer umatlas      4096 Feb 10 02:06 shared
[2026-02-10 03:12:16] -rw-r--r-- 2 boincer umatlas    597953 Feb 10 02:06 input.tar.gz
[2026-02-10 03:12:16] -rw-r--r-- 2 boincer umatlas     15845 Feb 10 02:06 start_atlas.sh
[2026-02-10 03:12:16] -rw-r--r-- 1 boincer umatlas         0 Feb 10 02:06 boinc_lockfile
[2026-02-10 03:12:16] -rw-r--r-- 1 boincer umatlas      2527 Feb 10 02:06 pandaJob.out
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas        57 Feb 10 02:06 setup.sh.local
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas   1009496 Feb 10 02:06 agis_schedconf.cvmfs.json
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas   1513144 Feb 10 02:06 agis_ddmendpoints.agis.ALL.json
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas       445 Feb 10 02:06 workernode_map.json
[2026-02-10 03:12:16] drwx------ 5 boincer umatlas      4096 Feb 10 02:06 pilot3
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas 180589218 Feb 10 03:11 HITS.48318010._016174.pool.root.1
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas        95 Feb 10 03:11 pilot_heartbeat.json
[2026-02-10 03:12:16] -rw-r--r-- 1 boincer umatlas       530 Feb 10 03:11 boinc_task_state.xml
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas      1045 Feb 10 03:11 memory_monitor_summary.json
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas    387498 Feb 10 03:11 log.48318010._016174.job.log.tgz.1
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas      6417 Feb 10 03:11 heartbeat.json
[2026-02-10 03:12:16] -rw-r--r-- 1 boincer umatlas      5954 Feb 10 03:12 init_data.xml
[2026-02-10 03:12:16] -rw-r--r-- 1 boincer umatlas      8192 Feb 10 03:12 boinc_mmap_file
[2026-02-10 03:12:16] -rw-r--r-- 1 boincer umatlas        27 Feb 10 03:12 wrapper_checkpoint.txt
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas       745 Feb 10 03:12 pilotlog.txt
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas    575836 Feb 10 03:12 log.48318010._016174.job.log.1
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas       357 Feb 10 03:12 output.list
[2026-02-10 03:12:16] -rw-r--r-- 1 boincer umatlas       620 Feb 10 03:12 runtime_log
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas    983040 Feb 10 03:12 result.tar.gz
[2026-02-10 03:12:16] -rw-r--r-- 1 boincer umatlas      9343 Feb 10 03:12 runtime_log.err
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas       659 Feb 10 03:12 PT8LDmMZs98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmrAhKDmJsevYm.diag
[2026-02-10 03:12:16] -rw-r--r-- 1 boincer umatlas     21528 Feb 10 03:12 stderr.txt
[2026-02-10 03:12:16] HITS file was successfully produced:
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas 180589218 Feb 10 03:11 shared/HITS.pool.root.1
[2026-02-10 03:12:16]  *** Contents of shared directory: ***
[2026-02-10 03:12:16] total 663728
[2026-02-10 03:12:16] -rw-r--r-- 2 boincer umatlas 497460049 Feb 10 02:06 ATLAS.root_0
[2026-02-10 03:12:16] -rw-r--r-- 2 boincer umatlas    597953 Feb 10 02:06 input.tar.gz
[2026-02-10 03:12:16] -rw-r--r-- 2 boincer umatlas     15845 Feb 10 02:06 start_atlas.sh
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas 180589218 Feb 10 03:11 HITS.pool.root.1
[2026-02-10 03:12:16] -rw------- 1 boincer umatlas    983040 Feb 10 03:12 result.tar.gz
03:12:18 (25710): run_atlas exited; CPU time 41868.124675
03:12:18 (25710): called boinc_finish(0)

</stderr_txt>
]]>

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