Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:52:34 (3524420): wrapper (7.7.26015): starting
23:52:34 (3524420): wrapper: running run_atlas (--nthreads 2)
[2026-02-10 23:52:34] Arguments: --nthreads 2
[2026-02-10 23:52:34] Threads: 2
[2026-02-10 23:52:34] Checking for CVMFS
[2026-02-10 23:52:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 23:52:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 23:52:34] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 23:52:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 23:52:34] 2.9.2.0 2873704 6768 63780 156093 3 50 23497486 36864000 0 130560 0 1923572 99.978 226985 12274 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-10 23:52:34] CVMFS is ok
[2026-02-10 23:52:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 23:52:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 23:52:34] Further information can be found at the LHC@home message board.
[2026-02-10 23:52:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 23:52:34] Checking for apptainer binary...
[2026-02-10 23:52:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 23:52:34] Running /usr/bin/apptainer --version
[2026-02-10 23:52:34] apptainer version 1.4.1-1.1
[2026-02-10 23:52:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 23:52:34] thA337
[2026-02-10 23:52:34] apptainer works
[2026-02-10 23:52:34] Set ATHENA_PROC_NUMBER=2
[2026-02-10 23:52:34] Set ATHENA_CORE_NUMBER=2
[2026-02-10 23:52:34] Starting ATLAS job with PandaID=7007431763
[2026-02-10 23:52:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-11 02:54:32]  *** The last 200 lines of the pilot log: ***
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,565 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-11 02:54:32] 2026-02-11 01:53:59,566 | INFO     | job 7007431763 has completed (purged errors)
[2026-02-11 02:54:32] 2026-02-11 01:53:59,566 | INFO     | overall cleanup function is called
[2026-02-11 02:54:32] 2026-02-11 01:54:00,572 | INFO     | --- collectZombieJob: --- 10, [3532853]
[2026-02-11 02:54:32] 2026-02-11 01:54:00,572 | INFO     | zombie collector waiting for pid 3532853
[2026-02-11 02:54:32] 2026-02-11 01:54:00,572 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-11 02:54:32] 2026-02-11 01:54:00,572 | INFO     | collected zombie processes
[2026-02-11 02:54:32] 2026-02-11 01:54:00,572 | INFO     | will attempt to kill all subprocesses of pid=3532853
[2026-02-11 02:54:32] 2026-02-11 01:54:00,600 | INFO     | process IDs to be killed: [3532853] (in reverse order)
[2026-02-11 02:54:32] 2026-02-11 01:54:00,619 | WARNING  | found no corresponding commands to process id(s)
[2026-02-11 02:54:32] 2026-02-11 01:54:00,619 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-11 02:54:32] 2026-02-11 01:54:00,620 | INFO     | did not find any defunct processes belonging to 3532853
[2026-02-11 02:54:32] 2026-02-11 01:54:00,620 | INFO     | did not find any defunct processes belonging to 3532853
[2026-02-11 02:54:32] 2026-02-11 01:54:00,620 | INFO     | ready for new job
[2026-02-11 02:54:32] 2026-02-11 01:54:00,620 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-11 02:54:32] 2026-02-11 01:54:00,621 | INFO     | **************************************
[2026-02-11 02:54:32] 2026-02-11 01:54:00,621 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-11 02:54:32] 2026-02-11 01:54:00,621 | INFO     | **************************************
[2026-02-11 02:54:32] 2026-02-11 01:54:00,621 | INFO     | 
[2026-02-11 02:54:32] 2026-02-11 01:54:00,621 | INFO     | architecture information:
[2026-02-11 02:54:32] 2026-02-11 01:54:00,621 | INFO     | executing command: cat /etc/os-release
[2026-02-11 02:54:32] 2026-02-11 01:54:00,629 | INFO     | cat /etc/os-release:
[2026-02-11 02:54:32] NAME="CentOS Linux"
[2026-02-11 02:54:32] VERSION="7 (Core)"
[2026-02-11 02:54:32] ID="centos"
[2026-02-11 02:54:32] ID_LIKE="rhel fedora"
[2026-02-11 02:54:32] VERSION_ID="7"
[2026-02-11 02:54:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-11 02:54:32] ANSI_COLOR="0;31"
[2026-02-11 02:54:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-11 02:54:32] HOME_URL="https://www.centos.org/"
[2026-02-11 02:54:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-11 02:54:32] 
[2026-02-11 02:54:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-11 02:54:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-11 02:54:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-11 02:54:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-11 02:54:32] 
[2026-02-11 02:54:32] 2026-02-11 01:54:00,629 | INFO     | **************************************
[2026-02-11 02:54:32] 2026-02-11 01:54:01,132 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-11 02:54:32] 2026-02-11 01:54:01,143 | INFO     | sufficient remaining disk space (485154095104 B)
[2026-02-11 02:54:32] 2026-02-11 01:54:01,143 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-11 02:54:32] 2026-02-11 01:54:01,143 | INFO     | current server update state: UPDATING_FINAL
[2026-02-11 02:54:32] 2026-02-11 01:54:01,143 | INFO     | update_server=False
[2026-02-11 02:54:32] 2026-02-11 01:54:01,143 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-11 02:54:32] 2026-02-11 01:54:01,143 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-11 02:54:32] 2026-02-11 01:54:01,143 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-11 02:54:32] 2026-02-11 01:54:01,503 | INFO     | all payload control threads have been joined
[2026-02-11 02:54:32] 2026-02-11 01:54:01,789 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-11 02:54:32] 2026-02-11 01:54:01,790 | INFO     | aborting loop
[2026-02-11 02:54:32] 2026-02-11 01:54:01,842 | INFO     | all data control threads have been joined
[2026-02-11 02:54:32] 2026-02-11 01:54:02,018 | INFO     | all job control threads have been joined
[2026-02-11 02:54:32] 2026-02-11 01:54:02,149 | INFO     | [job] retrieve thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:02,149 | INFO     | [job] queue monitor thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:02,170 | INFO     | [payload] validate_pre thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:02,192 | INFO     | [job] create_data_payload thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:02,221 | INFO     | [data] copytool_in thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:02,509 | INFO     | [payload] control thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:02,538 | INFO     | [payload] failed_post thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:02,795 | INFO     | [job] job monitor thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:02,848 | INFO     | [data] control thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:02,962 | INFO     | [payload] execute_payloads thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:03,024 | INFO     | [job] control thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:03,149 | INFO     | [data] copytool_out thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:03,493 | INFO     | [payload] validate_post thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:03,578 | INFO     | [job] validate thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:03,859 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-11 02:54:32] 2026-02-11 01:54:07,866 | INFO     | [data] queue_monitor thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:09,395 | INFO     | [monitor] cgroup control has ended
[2026-02-11 02:54:32] 2026-02-11 01:54:11,843 | INFO     | job.realtimelogging is not enabled
[2026-02-11 02:54:32] 2026-02-11 01:54:12,849 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-11 02:54:32] 2026-02-11 01:54:13,355 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140137025234752)>', '<ExcThread(monitor, started 140136743712512)>']
[2026-02-11 02:54:32] 2026-02-11 01:54:18,381 | INFO     | all workflow threads have been joined
[2026-02-11 02:54:32] 2026-02-11 01:54:18,381 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-11 02:54:32] 2026-02-11 01:54:18,382 | INFO     | traces error code: 0
[2026-02-11 02:54:32] 2026-02-11 01:54:18,382 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-11 02:54:32] 2026-02-11 01:54:32,162 | INFO     | PID=3528447 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-11 02:54:32] 2026-02-11 01:54:32,163 | INFO     | found 0 job(s) in 20 queues
[2026-02-11 02:54:32] 2026-02-11 01:54:32,163 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-11 02:54:32] 2026-02-11 01:54:32,163 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-11 02:54:32] 2026-02-11 01:54:32,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-11 02:54:32] 2026-02-11 01:54:32,163 | INFO     | [monitor] control thread has ended
[2026-02-11 02:54:32] 2026-02-11 01:54:32,201 [wrapper] ==== pilot stdout END ====
[2026-02-11 02:54:32] 2026-02-11 01:54:32,203 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-11 02:54:32] 2026-02-11 01:54:32,205 [wrapper] pilotpid: 3528447
[2026-02-11 02:54:32] 2026-02-11 01:54:32,207 [wrapper] Pilot exit status: 0
[2026-02-11 02:54:32] 2026-02-11 01:54:32,213 [wrapper] pandaids: 7007431763
[2026-02-11 02:54:32] 2026-02-11 01:54:32,225 [wrapper] cleanup supervisor_pilot 3538360 3528448
[2026-02-11 02:54:32] 2026-02-11 01:54:32,227 [wrapper] Test setup, not cleaning
[2026-02-11 02:54:32] 2026-02-11 01:54:32,229 [wrapper] apfmon messages muted
[2026-02-11 02:54:32] 2026-02-11 01:54:32,231 [wrapper] ==== wrapper stdout END ====
[2026-02-11 02:54:32] 2026-02-11 01:54:32,233 [wrapper] ==== wrapper stderr END ====
[2026-02-11 02:54:32]  *** Error codes and diagnostics ***
[2026-02-11 02:54:32]     "exeErrorCode": 0,
[2026-02-11 02:54:32]     "exeErrorDiag": "",
[2026-02-11 02:54:32]     "pilotErrorCode": 0,
[2026-02-11 02:54:32]     "pilotErrorDiag": "",
[2026-02-11 02:54:32]  *** Listing of results directory ***
[2026-02-11 02:54:32] total 950140
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc    584627 Feb 10 06:19 pilot3.tar.gz
[2026-02-11 02:54:32] -rwx------ 1 boinc boinc     36322 Feb 10 06:20 runpilot2-wrapper.sh
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc      5111 Feb 10 06:21 queuedata.json
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc       100 Feb 10 23:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-11 02:54:32] -rwxr-xr-x 1 boinc boinc      7986 Feb 10 23:52 run_atlas
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc       105 Feb 10 23:52 job.xml
[2026-02-11 02:54:32] -rw-r--r-- 2 boinc boinc 681868217 Feb 10 23:52 EVNT.48508760._000050.pool.root.1
[2026-02-11 02:54:32] -rw-r--r-- 2 boinc boinc    597954 Feb 10 23:52 input.tar.gz
[2026-02-11 02:54:32] -rw-r--r-- 2 boinc boinc     15845 Feb 10 23:52 start_atlas.sh
[2026-02-11 02:54:32] drwxrwx--x 2 boinc boinc      4096 Feb 10 23:52 shared
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc         0 Feb 10 23:52 boinc_setup_complete
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc      6206 Feb 10 23:52 init_data.xml
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc         0 Feb 10 23:52 boinc_lockfile
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc      2548 Feb 10 23:52 pandaJob.out
[2026-02-11 02:54:32] -rw------- 1 boinc boinc   1009657 Feb 10 23:52 agis_schedconf.cvmfs.json
[2026-02-11 02:54:32] -rw------- 1 boinc boinc       425 Feb 10 23:52 workernode_map.json
[2026-02-11 02:54:32] drwx------ 5 boinc boinc      4096 Feb 10 23:52 pilot3
[2026-02-11 02:54:32] -rw------- 1 boinc boinc 283347735 Feb 11 02:53 HITS.48508763._002564.pool.root.1
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc       531 Feb 11 02:53 boinc_task_state.xml
[2026-02-11 02:54:32] -rw------- 1 boinc boinc        95 Feb 11 02:53 pilot_heartbeat.json
[2026-02-11 02:54:32] -rw------- 1 boinc boinc      1018 Feb 11 02:53 memory_monitor_summary.json
[2026-02-11 02:54:32] -rw------- 1 boinc boinc   1512955 Feb 11 02:53 agis_ddmendpoints.agis.ALL.json
[2026-02-11 02:54:32] -rw------- 1 boinc boinc    354496 Feb 11 02:53 log.48508763._002564.job.log.tgz.1
[2026-02-11 02:54:32] -rw------- 1 boinc boinc      6306 Feb 11 02:53 heartbeat.json
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc      8192 Feb 11 02:54 boinc_mmap_file
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc        28 Feb 11 02:54 wrapper_checkpoint.txt
[2026-02-11 02:54:32] -rw------- 1 boinc boinc       747 Feb 11 02:54 pilotlog.txt
[2026-02-11 02:54:32] -rw------- 1 boinc boinc   1546497 Feb 11 02:54 log.48508763._002564.job.log.1
[2026-02-11 02:54:32] -rw------- 1 boinc boinc       357 Feb 11 02:54 output.list
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc       620 Feb 11 02:54 runtime_log
[2026-02-11 02:54:32] -rw------- 1 boinc boinc   1914880 Feb 11 02:54 result.tar.gz
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc      8897 Feb 11 02:54 runtime_log.err
[2026-02-11 02:54:32] -rw------- 1 boinc boinc       660 Feb 11 02:54 hd6NDmZLv98n9Rq4apOajLDm4fhM0noT9bVooX4SDmIpgKDmplDrXm.diag
[2026-02-11 02:54:32] -rw-r--r-- 1 boinc boinc     12922 Feb 11 02:54 stderr.txt
[2026-02-11 02:54:32] HITS file was successfully produced:
[2026-02-11 02:54:32] -rw------- 1 boinc boinc 283347735 Feb 11 02:53 shared/HITS.pool.root.1
[2026-02-11 02:54:32]  *** Contents of shared directory: ***
[2026-02-11 02:54:32] total 945076
[2026-02-11 02:54:32] -rw-r--r-- 2 boinc boinc 681868217 Feb 10 23:52 ATLAS.root_0
[2026-02-11 02:54:32] -rw-r--r-- 2 boinc boinc    597954 Feb 10 23:52 input.tar.gz
[2026-02-11 02:54:32] -rw-r--r-- 2 boinc boinc     15845 Feb 10 23:52 start_atlas.sh
[2026-02-11 02:54:32] -rw------- 1 boinc boinc 283347735 Feb 11 02:53 HITS.pool.root.1
[2026-02-11 02:54:32] -rw------- 1 boinc boinc   1914880 Feb 11 02:54 result.tar.gz
02:54:34 (3524420): run_atlas exited; CPU time 21323.073279
02:54:34 (3524420): called boinc_finish(0)

</stderr_txt>
]]>

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