Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:24:32 (3499986): wrapper (7.7.26015): starting
18:24:32 (3499986): wrapper: running run_atlas (--nthreads 2)
[2026-02-10 18:24:32] Arguments: --nthreads 2
[2026-02-10 18:24:32] Threads: 2
[2026-02-10 18:24:32] Checking for CVMFS
[2026-02-10 18:24:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 18:24:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 18:24:33] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 18:24:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 18:24:33] 2.9.2.0 2908847 6257 61700 156089 2 50 22930483 36864000 0 130560 0 1761082 99.977 213472 3071 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-10 18:24:33] CVMFS is ok
[2026-02-10 18:24:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 18:24:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 18:24:33] Further information can be found at the LHC@home message board.
[2026-02-10 18:24:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 18:24:33] Checking for apptainer binary...
[2026-02-10 18:24:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 18:24:33] Running /usr/bin/apptainer --version
[2026-02-10 18:24:33] apptainer version 1.4.1-1.1
[2026-02-10 18:24:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 18:24:33] madmaxA277a
[2026-02-10 18:24:33] apptainer works
[2026-02-10 18:24:33] Set ATHENA_PROC_NUMBER=2
[2026-02-10 18:24:33] Set ATHENA_CORE_NUMBER=2
[2026-02-10 18:24:33] Starting ATLAS job with PandaID=7007049293
[2026-02-10 18:24:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 20:35:23]  *** The last 200 lines of the pilot log: ***
[2026-02-10 20:35:23] 2026-02-10 19:34:52,527 | INFO     | --- collectZombieJob: --- 10, [3508420]
[2026-02-10 20:35:23] 2026-02-10 19:34:52,527 | INFO     | zombie collector waiting for pid 3508420
[2026-02-10 20:35:23] 2026-02-10 19:34:52,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 20:35:23] 2026-02-10 19:34:52,528 | INFO     | collected zombie processes
[2026-02-10 20:35:23] 2026-02-10 19:34:52,528 | INFO     | will attempt to kill all subprocesses of pid=3508420
[2026-02-10 20:35:23] 2026-02-10 19:34:52,558 | INFO     | process IDs to be killed: [3508420] (in reverse order)
[2026-02-10 20:35:23] 2026-02-10 19:34:52,578 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 20:35:23] 2026-02-10 19:34:52,578 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 20:35:23] 2026-02-10 19:34:52,579 | INFO     | did not find any defunct processes belonging to 3508420
[2026-02-10 20:35:23] 2026-02-10 19:34:52,579 | INFO     | did not find any defunct processes belonging to 3508420
[2026-02-10 20:35:23] 2026-02-10 19:34:52,579 | INFO     | ready for new job
[2026-02-10 20:35:23] 2026-02-10 19:34:52,580 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 20:35:23] 2026-02-10 19:34:52,580 | INFO     | **************************************
[2026-02-10 20:35:23] 2026-02-10 19:34:52,580 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 20:35:23] 2026-02-10 19:34:52,580 | INFO     | **************************************
[2026-02-10 20:35:23] 2026-02-10 19:34:52,580 | INFO     | 
[2026-02-10 20:35:23] 2026-02-10 19:34:52,580 | INFO     | architecture information:
[2026-02-10 20:35:23] 2026-02-10 19:34:52,580 | INFO     | executing command: cat /etc/os-release
[2026-02-10 20:35:23] 2026-02-10 19:34:52,587 | INFO     | cat /etc/os-release:
[2026-02-10 20:35:23] NAME="CentOS Linux"
[2026-02-10 20:35:23] VERSION="7 (Core)"
[2026-02-10 20:35:23] ID="centos"
[2026-02-10 20:35:23] ID_LIKE="rhel fedora"
[2026-02-10 20:35:23] VERSION_ID="7"
[2026-02-10 20:35:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 20:35:23] ANSI_COLOR="0;31"
[2026-02-10 20:35:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 20:35:23] HOME_URL="https://www.centos.org/"
[2026-02-10 20:35:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 20:35:23] 
[2026-02-10 20:35:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 20:35:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 20:35:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 20:35:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 20:35:23] 
[2026-02-10 20:35:23] 2026-02-10 19:34:52,588 | INFO     | **************************************
[2026-02-10 20:35:23] 2026-02-10 19:34:53,091 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 20:35:23] 2026-02-10 19:34:53,103 | INFO     | sufficient remaining disk space (493266927616 B)
[2026-02-10 20:35:23] 2026-02-10 19:34:53,103 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 20:35:23] 2026-02-10 19:34:53,103 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 20:35:23] 2026-02-10 19:34:53,103 | INFO     | update_server=False
[2026-02-10 20:35:23] 2026-02-10 19:34:53,103 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 20:35:23] 2026-02-10 19:34:53,253 | INFO     | all payload control threads have been joined
[2026-02-10 20:35:23] 2026-02-10 19:34:53,387 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-10 20:35:23] 2026-02-10 19:34:53,387 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-10 20:35:23] 2026-02-10 19:34:53,388 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 20:35:23] 2026-02-10 19:34:53,388 | INFO     | will abort loop
[2026-02-10 20:35:23] 2026-02-10 19:34:53,401 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 20:35:23] 2026-02-10 19:34:53,931 | INFO     | all job control threads have been joined
[2026-02-10 20:35:23] 2026-02-10 19:34:53,971 | INFO     | all data control threads have been joined
[2026-02-10 20:35:23] 2026-02-10 19:34:54,107 | INFO     | [job] retrieve thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:54,127 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:54,158 | INFO     | [data] copytool_in thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:54,193 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:54,255 | INFO     | [payload] control thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:54,394 | INFO     | [job] job monitor thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:54,454 | INFO     | [payload] validate_post thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:54,739 | INFO     | [payload] failed_post thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:54,846 | INFO     | job.realtimelogging is not enabled
[2026-02-10 20:35:23] 2026-02-10 19:34:54,937 | INFO     | [job] control thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:54,977 | INFO     | [data] control thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:55,403 | INFO     | [data] copytool_out thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:55,454 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:55,584 | INFO     | [job] validate thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:55,852 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:34:56,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 20:35:23] 2026-02-10 19:34:56,429 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 20:35:23] 2026-02-10 19:34:57,080 | INFO     | [job] queue monitor thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:35:00,436 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 20:35:23] 2026-02-10 19:35:02,526 | INFO     | [monitor] cgroup control has ended
[2026-02-10 20:35:23] 2026-02-10 19:35:02,797 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140302019483456)>', '<ExcThread(monitor, started 140301532387072)>']
[2026-02-10 20:35:23] 2026-02-10 19:35:07,823 | INFO     | all workflow threads have been joined
[2026-02-10 20:35:23] 2026-02-10 19:35:07,823 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 20:35:23] 2026-02-10 19:35:07,824 | INFO     | traces error code: 0
[2026-02-10 20:35:23] 2026-02-10 19:35:07,824 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 20:35:23] 2026-02-10 19:35:23,695 | INFO     | PID=3504013 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-10 20:35:23] 2026-02-10 19:35:23,695 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 20:35:23] 2026-02-10 19:35:23,695 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 20:35:23] 2026-02-10 19:35:23,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 20:35:23] 2026-02-10 19:35:23,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 20:35:23] 2026-02-10 19:35:23,695 | CRITICAL | thread 'MainThread' is not alive
[2026-02-10 20:35:23] 2026-02-10 19:35:23,695 | INFO     | [monitor] control thread has ended
[2026-02-10 20:35:23] 2026-02-10 19:35:23,731 [wrapper] ==== pilot stdout END ====
[2026-02-10 20:35:23] 2026-02-10 19:35:23,733 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 20:35:23] 2026-02-10 19:35:23,735 [wrapper] pilotpid: 3504013
[2026-02-10 20:35:23] 2026-02-10 19:35:23,737 [wrapper] Pilot exit status: 0
[2026-02-10 20:35:23] 2026-02-10 19:35:23,742 [wrapper] pandaids: 7007049293
[2026-02-10 20:35:23] 2026-02-10 19:35:23,754 [wrapper] cleanup supervisor_pilot 3513308 3504014
[2026-02-10 20:35:23] 2026-02-10 19:35:23,756 [wrapper] Test setup, not cleaning
[2026-02-10 20:35:23] 2026-02-10 19:35:23,758 [wrapper] apfmon messages muted
[2026-02-10 20:35:23] 2026-02-10 19:35:23,760 [wrapper] ==== wrapper stdout END ====
[2026-02-10 20:35:23] 2026-02-10 19:35:23,762 [wrapper] ==== wrapper stderr END ====
[2026-02-10 20:35:23]  *** Error codes and diagnostics ***
[2026-02-10 20:35:23]     "exeErrorCode": 0,
[2026-02-10 20:35:23]     "exeErrorDiag": "",
[2026-02-10 20:35:23]     "pilotErrorCode": 0,
[2026-02-10 20:35:23]     "pilotErrorDiag": "",
[2026-02-10 20:35:23]  *** Listing of results directory ***
[2026-02-10 20:35:23] total 661684
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc    584627 Feb 10 03:02 pilot3.tar.gz
[2026-02-10 20:35:23] -rwx------ 1 boinc boinc     36322 Feb 10 03:19 runpilot2-wrapper.sh
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc      5111 Feb 10 03:20 queuedata.json
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc       100 Feb 10 18:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 20:35:23] -rwxr-xr-x 1 boinc boinc      7986 Feb 10 18:24 run_atlas
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc       105 Feb 10 18:24 job.xml
[2026-02-10 20:35:23] -rw-r--r-- 2 boinc boinc 492021551 Feb 10 18:24 EVNT.48318040._000269.pool.root.1
[2026-02-10 20:35:23] drwxrwx--x 2 boinc boinc      4096 Feb 10 18:24 shared
[2026-02-10 20:35:23] -rw-r--r-- 2 boinc boinc    597961 Feb 10 18:24 input.tar.gz
[2026-02-10 20:35:23] -rw-r--r-- 2 boinc boinc     15845 Feb 10 18:24 start_atlas.sh
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc         0 Feb 10 18:24 boinc_setup_complete
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc      6210 Feb 10 18:24 init_data.xml
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc         0 Feb 10 18:24 boinc_lockfile
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc      2537 Feb 10 18:24 pandaJob.out
[2026-02-10 20:35:23] -rw------- 1 boinc boinc   1009534 Feb 10 18:24 agis_schedconf.cvmfs.json
[2026-02-10 20:35:23] -rw------- 1 boinc boinc   1512955 Feb 10 18:24 agis_ddmendpoints.agis.ALL.json
[2026-02-10 20:35:23] -rw------- 1 boinc boinc       422 Feb 10 18:24 workernode_map.json
[2026-02-10 20:35:23] drwx------ 5 boinc boinc      4096 Feb 10 18:24 pilot3
[2026-02-10 20:35:23] -rw------- 1 boinc boinc 178788095 Feb 10 20:34 HITS.48318042._014159.pool.root.1
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc       530 Feb 10 20:34 boinc_task_state.xml
[2026-02-10 20:35:23] -rw------- 1 boinc boinc      1020 Feb 10 20:34 memory_monitor_summary.json
[2026-02-10 20:35:23] -rw------- 1 boinc boinc    291216 Feb 10 20:34 log.48318042._014159.job.log.tgz.1
[2026-02-10 20:35:23] -rw------- 1 boinc boinc      6306 Feb 10 20:34 heartbeat.json
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc        27 Feb 10 20:35 wrapper_checkpoint.txt
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc      8192 Feb 10 20:35 boinc_mmap_file
[2026-02-10 20:35:23] -rw------- 1 boinc boinc        95 Feb 10 20:35 pilot_heartbeat.json
[2026-02-10 20:35:23] -rw------- 1 boinc boinc       817 Feb 10 20:35 pilotlog.txt
[2026-02-10 20:35:23] -rw------- 1 boinc boinc   1122020 Feb 10 20:35 log.48318042._014159.job.log.1
[2026-02-10 20:35:23] -rw------- 1 boinc boinc       357 Feb 10 20:35 output.list
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc       620 Feb 10 20:35 runtime_log
[2026-02-10 20:35:23] -rw------- 1 boinc boinc   1433600 Feb 10 20:35 result.tar.gz
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc      8921 Feb 10 20:35 runtime_log.err
[2026-02-10 20:35:23] -rw------- 1 boinc boinc       662 Feb 10 20:35 8mKODm1Ws98n9Rq4apOajLDm4fhM0noT9bVooX4SDmlPgKDmsV2k3n.diag
[2026-02-10 20:35:23] -rw-r--r-- 1 boinc boinc     11031 Feb 10 20:35 stderr.txt
[2026-02-10 20:35:23] HITS file was successfully produced:
[2026-02-10 20:35:23] -rw------- 1 boinc boinc 178788095 Feb 10 20:34 shared/HITS.pool.root.1
[2026-02-10 20:35:23]  *** Contents of shared directory: ***
[2026-02-10 20:35:23] total 657100
[2026-02-10 20:35:23] -rw-r--r-- 2 boinc boinc 492021551 Feb 10 18:24 ATLAS.root_0
[2026-02-10 20:35:23] -rw-r--r-- 2 boinc boinc    597961 Feb 10 18:24 input.tar.gz
[2026-02-10 20:35:23] -rw-r--r-- 2 boinc boinc     15845 Feb 10 18:24 start_atlas.sh
[2026-02-10 20:35:23] -rw------- 1 boinc boinc 178788095 Feb 10 20:34 HITS.pool.root.1
[2026-02-10 20:35:23] -rw------- 1 boinc boinc   1433600 Feb 10 20:35 result.tar.gz
20:35:25 (3499986): run_atlas exited; CPU time 15159.568474
20:35:25 (3499986): called boinc_finish(0)

</stderr_txt>
]]>

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