Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:43:37 (3483073): wrapper (7.7.26015): starting
15:43:37 (3483073): wrapper: running run_atlas (--nthreads 2)
[2026-02-10 15:43:37] Arguments: --nthreads 2
[2026-02-10 15:43:37] Threads: 2
[2026-02-10 15:43:37] Checking for CVMFS
[2026-02-10 15:43:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 15:43:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 15:43:38] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 15:43:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 15:43:38] 2.9.2.0 2873704 6280 64556 156085 0 188 23454008 36864000 0 130560 0 1799907 99.978 216242 12119 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-10 15:43:38] CVMFS is ok
[2026-02-10 15:43:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 15:43:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 15:43:38] Further information can be found at the LHC@home message board.
[2026-02-10 15:43:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 15:43:38] Checking for apptainer binary...
[2026-02-10 15:43:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 15:43:38] Running /usr/bin/apptainer --version
[2026-02-10 15:43:38] apptainer version 1.4.1-1.1
[2026-02-10 15:43:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 15:43:38] thA337
[2026-02-10 15:43:38] apptainer works
[2026-02-10 15:43:38] Set ATHENA_PROC_NUMBER=2
[2026-02-10 15:43:38] Set ATHENA_CORE_NUMBER=2
[2026-02-10 15:43:38] Starting ATLAS job with PandaID=7009372184
[2026-02-10 15:43:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 18:46:19]  *** The last 200 lines of the pilot log: ***
[2026-02-10 18:46:19] 2026-02-10 17:45:39,061 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-10 18:46:19] 2026-02-10 17:45:39,061 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-10 18:46:19] 2026-02-10 17:45:39,061 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-10 18:46:19] 2026-02-10 17:45:39,061 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-10 18:46:19] 2026-02-10 17:45:39,061 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-10 18:46:19] 2026-02-10 17:45:39,061 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-10 18:46:19] 2026-02-10 17:45:39,061 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-10 18:46:19] 2026-02-10 17:45:39,061 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 18:46:19] 2026-02-10 17:45:39,061 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 18:46:19] 2026-02-10 17:45:39,061 | INFO     | job 7009372184 has completed (purged errors)
[2026-02-10 18:46:19] 2026-02-10 17:45:39,061 | INFO     | overall cleanup function is called
[2026-02-10 18:46:19] 2026-02-10 17:45:40,067 | INFO     | --- collectZombieJob: --- 10, [3491510]
[2026-02-10 18:46:19] 2026-02-10 17:45:40,067 | INFO     | zombie collector waiting for pid 3491510
[2026-02-10 18:46:19] 2026-02-10 17:45:40,068 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 18:46:19] 2026-02-10 17:45:40,068 | INFO     | collected zombie processes
[2026-02-10 18:46:19] 2026-02-10 17:45:40,068 | INFO     | will attempt to kill all subprocesses of pid=3491510
[2026-02-10 18:46:19] 2026-02-10 17:45:40,099 | INFO     | process IDs to be killed: [3491510] (in reverse order)
[2026-02-10 18:46:19] 2026-02-10 17:45:40,118 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 18:46:19] 2026-02-10 17:45:40,118 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 18:46:19] 2026-02-10 17:45:40,119 | INFO     | did not find any defunct processes belonging to 3491510
[2026-02-10 18:46:19] 2026-02-10 17:45:40,120 | INFO     | did not find any defunct processes belonging to 3491510
[2026-02-10 18:46:19] 2026-02-10 17:45:40,120 | INFO     | ready for new job
[2026-02-10 18:46:19] 2026-02-10 17:45:40,120 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 18:46:19] 2026-02-10 17:45:40,120 | INFO     | **************************************
[2026-02-10 18:46:19] 2026-02-10 17:45:40,120 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 18:46:19] 2026-02-10 17:45:40,120 | INFO     | **************************************
[2026-02-10 18:46:19] 2026-02-10 17:45:40,120 | INFO     | 
[2026-02-10 18:46:19] 2026-02-10 17:45:40,120 | INFO     | architecture information:
[2026-02-10 18:46:19] 2026-02-10 17:45:40,121 | INFO     | executing command: cat /etc/os-release
[2026-02-10 18:46:19] 2026-02-10 17:45:40,128 | INFO     | cat /etc/os-release:
[2026-02-10 18:46:19] NAME="CentOS Linux"
[2026-02-10 18:46:19] VERSION="7 (Core)"
[2026-02-10 18:46:19] ID="centos"
[2026-02-10 18:46:19] ID_LIKE="rhel fedora"
[2026-02-10 18:46:19] VERSION_ID="7"
[2026-02-10 18:46:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 18:46:19] ANSI_COLOR="0;31"
[2026-02-10 18:46:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 18:46:19] HOME_URL="https://www.centos.org/"
[2026-02-10 18:46:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 18:46:19] 
[2026-02-10 18:46:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 18:46:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 18:46:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 18:46:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 18:46:19] 
[2026-02-10 18:46:19] 2026-02-10 17:45:40,129 | INFO     | **************************************
[2026-02-10 18:46:19] 2026-02-10 17:45:40,632 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 18:46:19] 2026-02-10 17:45:40,644 | INFO     | sufficient remaining disk space (485007294464 B)
[2026-02-10 18:46:19] 2026-02-10 17:45:40,644 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 18:46:19] 2026-02-10 17:45:40,644 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 18:46:19] 2026-02-10 17:45:40,644 | INFO     | update_server=False
[2026-02-10 18:46:19] 2026-02-10 17:45:40,644 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 18:46:19] 2026-02-10 17:45:40,644 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 18:46:19] 2026-02-10 17:45:40,644 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 18:46:19] 2026-02-10 17:45:40,644 | INFO     | aborting loop
[2026-02-10 18:46:19] 2026-02-10 17:45:41,235 | INFO     | all payload control threads have been joined
[2026-02-10 18:46:19] 2026-02-10 17:45:41,374 | INFO     | all job control threads have been joined
[2026-02-10 18:46:19] 2026-02-10 17:45:41,556 | INFO     | all data control threads have been joined
[2026-02-10 18:46:19] 2026-02-10 17:45:41,645 | INFO     | [job] retrieve thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:41,650 | INFO     | [job] queue monitor thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:41,650 | INFO     | [job] job monitor thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:41,751 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 18:46:19] 2026-02-10 17:45:41,931 | INFO     | [payload] validate_post thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:42,000 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:42,118 | INFO     | [data] copytool_in thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:42,242 | INFO     | [payload] control thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:42,380 | INFO     | [job] control thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:42,562 | INFO     | [data] control thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:42,888 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:42,996 | INFO     | [payload] failed_post thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:43,018 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:43,039 | INFO     | [job] validate thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:43,132 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:43,228 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 18:46:19] 2026-02-10 17:45:43,757 | INFO     | [data] copytool_out thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:45:47,235 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 18:46:19] 2026-02-10 17:46:10,472 | INFO     | PID=3487100 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-10 18:46:19] 2026-02-10 17:46:10,473 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 18:46:19] 2026-02-10 17:46:10,473 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 18:46:19] 2026-02-10 17:46:10,473 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 18:46:19] 2026-02-10 17:46:12,929 | INFO     | [monitor] cgroup control has ended
[2026-02-10 18:46:19] 2026-02-10 17:46:14,516 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140418596771648)>', '<ExcThread(monitor, started 140418100483840)>']
[2026-02-10 18:46:19] 2026-02-10 17:46:15,500 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 18:46:19] 2026-02-10 17:46:15,501 | INFO     | [monitor] control thread has ended
[2026-02-10 18:46:19] 2026-02-10 17:46:19,542 | INFO     | all workflow threads have been joined
[2026-02-10 18:46:19] 2026-02-10 17:46:19,542 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 18:46:19] 2026-02-10 17:46:19,543 | INFO     | traces error code: 0
[2026-02-10 18:46:19] 2026-02-10 17:46:19,543 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 18:46:19] 2026-02-10 17:46:19,584 [wrapper] ==== pilot stdout END ====
[2026-02-10 18:46:19] 2026-02-10 17:46:19,587 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 18:46:19] 2026-02-10 17:46:19,589 [wrapper] pilotpid: 3487100
[2026-02-10 18:46:19] 2026-02-10 17:46:19,592 [wrapper] Pilot exit status: 0
[2026-02-10 18:46:19] 2026-02-10 17:46:19,597 [wrapper] pandaids: 7009372184
[2026-02-10 18:46:19] 2026-02-10 17:46:19,609 [wrapper] cleanup supervisor_pilot 3496731 3487101
[2026-02-10 18:46:19] 2026-02-10 17:46:19,611 [wrapper] Test setup, not cleaning
[2026-02-10 18:46:19] 2026-02-10 17:46:19,613 [wrapper] apfmon messages muted
[2026-02-10 18:46:19] 2026-02-10 17:46:19,615 [wrapper] ==== wrapper stdout END ====
[2026-02-10 18:46:19] 2026-02-10 17:46:19,617 [wrapper] ==== wrapper stderr END ====
[2026-02-10 18:46:19]  *** Error codes and diagnostics ***
[2026-02-10 18:46:19]     "exeErrorCode": 0,
[2026-02-10 18:46:19]     "exeErrorDiag": "",
[2026-02-10 18:46:19]     "pilotErrorCode": 0,
[2026-02-10 18:46:19]     "pilotErrorDiag": "",
[2026-02-10 18:46:19]  *** Listing of results directory ***
[2026-02-10 18:46:19] total 935560
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc    584627 Feb  9 21:26 pilot3.tar.gz
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc      5111 Feb  9 21:30 queuedata.json
[2026-02-10 18:46:19] -rwx------ 1 boinc boinc     36322 Feb  9 21:31 runpilot2-wrapper.sh
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc       100 Feb 10 15:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 18:46:19] -rwxr-xr-x 1 boinc boinc      7986 Feb 10 15:43 run_atlas
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc       105 Feb 10 15:43 job.xml
[2026-02-10 18:46:19] -rw-r--r-- 2 boinc boinc 673747359 Feb 10 15:43 EVNT.48431094._000446.pool.root.1
[2026-02-10 18:46:19] -rw-r--r-- 2 boinc boinc    597959 Feb 10 15:43 input.tar.gz
[2026-02-10 18:46:19] -rw-r--r-- 2 boinc boinc     15845 Feb 10 15:43 start_atlas.sh
[2026-02-10 18:46:19] drwxrwx--x 2 boinc boinc      4096 Feb 10 15:43 shared
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc         0 Feb 10 15:43 boinc_setup_complete
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc      6206 Feb 10 15:43 init_data.xml
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc         0 Feb 10 15:43 boinc_lockfile
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc      2555 Feb 10 15:43 pandaJob.out
[2026-02-10 18:46:19] -rw------- 1 boinc boinc   1009464 Feb 10 15:43 agis_schedconf.cvmfs.json
[2026-02-10 18:46:19] -rw------- 1 boinc boinc       425 Feb 10 15:43 workernode_map.json
[2026-02-10 18:46:19] drwx------ 5 boinc boinc      4096 Feb 10 15:43 pilot3
[2026-02-10 18:46:19] -rw------- 1 boinc boinc 276586338 Feb 10 18:45 HITS.48431096._019878.pool.root.1
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc       531 Feb 10 18:45 boinc_task_state.xml
[2026-02-10 18:46:19] -rw------- 1 boinc boinc      1017 Feb 10 18:45 memory_monitor_summary.json
[2026-02-10 18:46:19] -rw------- 1 boinc boinc   1512955 Feb 10 18:45 agis_ddmendpoints.agis.ALL.json
[2026-02-10 18:46:19] -rw------- 1 boinc boinc    325455 Feb 10 18:45 log.48431096._019878.job.log.tgz.1
[2026-02-10 18:46:19] -rw------- 1 boinc boinc      6322 Feb 10 18:45 heartbeat.json
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc        28 Feb 10 18:46 wrapper_checkpoint.txt
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc      8192 Feb 10 18:46 boinc_mmap_file
[2026-02-10 18:46:19] -rw------- 1 boinc boinc        95 Feb 10 18:46 pilot_heartbeat.json
[2026-02-10 18:46:19] -rw------- 1 boinc boinc      4748 Feb 10 18:46 pilotlog.txt
[2026-02-10 18:46:19] -rw------- 1 boinc boinc   1547492 Feb 10 18:46 log.48431096._019878.job.log.1
[2026-02-10 18:46:19] -rw------- 1 boinc boinc       357 Feb 10 18:46 output.list
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc       620 Feb 10 18:46 runtime_log
[2026-02-10 18:46:19] -rw------- 1 boinc boinc   1894400 Feb 10 18:46 result.tar.gz
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc      8897 Feb 10 18:46 runtime_log.err
[2026-02-10 18:46:19] -rw------- 1 boinc boinc       660 Feb 10 18:46 n6hNDmL6m98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmfdgKDmrlawYn.diag
[2026-02-10 18:46:19] -rw-r--r-- 1 boinc boinc     11723 Feb 10 18:46 stderr.txt
[2026-02-10 18:46:19] HITS file was successfully produced:
[2026-02-10 18:46:19] -rw------- 1 boinc boinc 276586338 Feb 10 18:45 shared/HITS.pool.root.1
[2026-02-10 18:46:19]  *** Contents of shared directory: ***
[2026-02-10 18:46:19] total 930524
[2026-02-10 18:46:19] -rw-r--r-- 2 boinc boinc 673747359 Feb 10 15:43 ATLAS.root_0
[2026-02-10 18:46:19] -rw-r--r-- 2 boinc boinc    597959 Feb 10 15:43 input.tar.gz
[2026-02-10 18:46:19] -rw-r--r-- 2 boinc boinc     15845 Feb 10 15:43 start_atlas.sh
[2026-02-10 18:46:19] -rw------- 1 boinc boinc 276586338 Feb 10 18:45 HITS.pool.root.1
[2026-02-10 18:46:19] -rw------- 1 boinc boinc   1894400 Feb 10 18:46 result.tar.gz
18:46:21 (3483073): run_atlas exited; CPU time 21386.334706
18:46:21 (3483073): called boinc_finish(0)

</stderr_txt>
]]>

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