Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:51:51 (2617831): wrapper (7.7.26015): starting
14:51:51 (2617831): wrapper: running run_atlas (--nthreads 3)
[2026-02-10 14:51:51] Arguments: --nthreads 3
[2026-02-10 14:51:51] Threads: 3
[2026-02-10 14:51:51] Checking for CVMFS
[2026-02-10 14:51:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 14:51:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 14:51:52] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 14:51:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 14:51:52] 2.9.2.0 1622115 6143 81008 156085 1 188 26531458 36864001 0 130560 0 2570280 99.984 208956 15212 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-10 14:51:52] CVMFS is ok
[2026-02-10 14:51:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 14:51:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 14:51:52] Further information can be found at the LHC@home message board.
[2026-02-10 14:51:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 14:51:52] Checking for apptainer binary...
[2026-02-10 14:51:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 14:51:52] Running /usr/bin/apptainer --version
[2026-02-10 14:51:52] apptainer version 1.4.1-1.1
[2026-02-10 14:51:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 14:51:52] magicA246a
[2026-02-10 14:51:52] apptainer works
[2026-02-10 14:51:52] Set ATHENA_PROC_NUMBER=3
[2026-02-10 14:51:52] Set ATHENA_CORE_NUMBER=3
[2026-02-10 14:51:52] Starting ATLAS job with PandaID=7009370762
[2026-02-10 14:51:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 16:51:16]  *** The last 200 lines of the pilot log: ***
[2026-02-10 16:51:16] 2026-02-10 15:50:33,755 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-10 16:51:16] 2026-02-10 15:50:33,755 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-10 16:51:16] 2026-02-10 15:50:33,756 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-10 16:51:16] 2026-02-10 15:50:33,756 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-10 16:51:16] 2026-02-10 15:50:33,756 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-10 16:51:16] 2026-02-10 15:50:33,756 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-10 16:51:16] 2026-02-10 15:50:33,756 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-10 16:51:16] 2026-02-10 15:50:33,756 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-10 16:51:16] 2026-02-10 15:50:33,756 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-10 16:51:16] 2026-02-10 15:50:33,756 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-10 16:51:16] 2026-02-10 15:50:33,756 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 16:51:16] 2026-02-10 15:50:33,756 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 16:51:16] 2026-02-10 15:50:33,756 | INFO     | job 7009370762 has completed (purged errors)
[2026-02-10 16:51:16] 2026-02-10 15:50:33,756 | INFO     | overall cleanup function is called
[2026-02-10 16:51:16] 2026-02-10 15:50:34,762 | INFO     | --- collectZombieJob: --- 10, [2626301]
[2026-02-10 16:51:16] 2026-02-10 15:50:34,762 | INFO     | zombie collector waiting for pid 2626301
[2026-02-10 16:51:16] 2026-02-10 15:50:34,763 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 16:51:16] 2026-02-10 15:50:34,763 | INFO     | collected zombie processes
[2026-02-10 16:51:16] 2026-02-10 15:50:34,763 | INFO     | will attempt to kill all subprocesses of pid=2626301
[2026-02-10 16:51:16] 2026-02-10 15:50:34,855 | WARNING  | process 2626301 can no longer be monitored (due to stat problems) - aborting
[2026-02-10 16:51:16] 2026-02-10 15:50:34,866 | INFO     | process IDs to be killed: [2626301] (in reverse order)
[2026-02-10 16:51:16] 2026-02-10 15:50:34,896 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 16:51:16] 2026-02-10 15:50:34,896 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 16:51:16] 2026-02-10 15:50:34,902 | INFO     | did not find any defunct processes belonging to 2626301
[2026-02-10 16:51:16] 2026-02-10 15:50:34,906 | INFO     | did not find any defunct processes belonging to 2626301
[2026-02-10 16:51:16] 2026-02-10 15:50:34,906 | INFO     | ready for new job
[2026-02-10 16:51:16] 2026-02-10 15:50:34,906 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 16:51:16] 2026-02-10 15:50:34,907 | INFO     | **************************************
[2026-02-10 16:51:16] 2026-02-10 15:50:34,907 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 16:51:16] 2026-02-10 15:50:34,907 | INFO     | **************************************
[2026-02-10 16:51:16] 2026-02-10 15:50:34,907 | INFO     | 
[2026-02-10 16:51:16] 2026-02-10 15:50:34,908 | INFO     | architecture information:
[2026-02-10 16:51:16] 2026-02-10 15:50:34,908 | INFO     | executing command: cat /etc/os-release
[2026-02-10 16:51:16] 2026-02-10 15:50:34,917 | INFO     | cat /etc/os-release:
[2026-02-10 16:51:16] NAME="CentOS Linux"
[2026-02-10 16:51:16] VERSION="7 (Core)"
[2026-02-10 16:51:16] ID="centos"
[2026-02-10 16:51:16] ID_LIKE="rhel fedora"
[2026-02-10 16:51:16] VERSION_ID="7"
[2026-02-10 16:51:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 16:51:16] ANSI_COLOR="0;31"
[2026-02-10 16:51:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 16:51:16] HOME_URL="https://www.centos.org/"
[2026-02-10 16:51:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 16:51:16] 
[2026-02-10 16:51:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 16:51:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 16:51:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 16:51:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 16:51:16] 
[2026-02-10 16:51:16] 2026-02-10 15:50:34,918 | INFO     | **************************************
[2026-02-10 16:51:16] 2026-02-10 15:50:34,921 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-10 16:51:16] 2026-02-10 15:50:34,973 | INFO     | number of running child processes to parent process 2626301: 1
[2026-02-10 16:51:16] 2026-02-10 15:50:34,973 | INFO     | maximum number of monitored processes: 6
[2026-02-10 16:51:16] 2026-02-10 15:50:34,973 | INFO     | aborting job monitoring since job object (job id=7009370762) has expired
[2026-02-10 16:51:16] 2026-02-10 15:50:35,420 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 16:51:16] 2026-02-10 15:50:35,431 | INFO     | sufficient remaining disk space (273587109888 B)
[2026-02-10 16:51:16] 2026-02-10 15:50:35,432 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 16:51:16] 2026-02-10 15:50:35,432 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 16:51:16] 2026-02-10 15:50:35,432 | INFO     | update_server=False
[2026-02-10 16:51:16] 2026-02-10 15:50:35,432 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 16:51:16] 2026-02-10 15:50:35,432 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 16:51:16] 2026-02-10 15:50:35,432 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 16:51:16] 2026-02-10 15:50:35,432 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 16:51:16] 2026-02-10 15:50:35,432 | INFO     | will abort loop
[2026-02-10 16:51:16] 2026-02-10 15:50:35,792 | INFO     | all data control threads have been joined
[2026-02-10 16:51:16] 2026-02-10 15:50:35,821 | INFO     | all job control threads have been joined
[2026-02-10 16:51:16] 2026-02-10 15:50:36,121 | INFO     | all payload control threads have been joined
[2026-02-10 16:51:16] 2026-02-10 15:50:36,437 | INFO     | [job] retrieve thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:36,438 | INFO     | [job] queue monitor thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:36,438 | INFO     | [job] job monitor thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:36,452 | INFO     | [payload] failed_post thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:36,687 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 16:51:16] 2026-02-10 15:50:36,796 | INFO     | [data] control thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:36,826 | INFO     | [job] control thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:37,123 | INFO     | [payload] control thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:37,127 | INFO     | [job] validate thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:37,245 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:37,272 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:37,312 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:37,381 | INFO     | [data] copytool_in thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:37,540 | INFO     | [payload] validate_post thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:38,693 | INFO     | [data] copytool_out thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:39,438 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:50:39,615 | INFO     | job.realtimelogging is not enabled
[2026-02-10 16:51:16] 2026-02-10 15:50:40,620 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 16:51:16] 2026-02-10 15:51:05,995 | INFO     | PID=2621867 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-10 16:51:16] 2026-02-10 15:51:05,995 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 16:51:16] 2026-02-10 15:51:05,995 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 16:51:16] 2026-02-10 15:51:05,995 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 16:51:16] 2026-02-10 15:51:10,124 | INFO     | [monitor] cgroup control has ended
[2026-02-10 16:51:16] 2026-02-10 15:51:11,474 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140423516297024)>', '<ExcThread(monitor, started 140422739388160)>']
[2026-02-10 16:51:16] 2026-02-10 15:51:12,022 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 16:51:16] 2026-02-10 15:51:12,023 | INFO     | [monitor] control thread has ended
[2026-02-10 16:51:16] 2026-02-10 15:51:16,500 | INFO     | all workflow threads have been joined
[2026-02-10 16:51:16] 2026-02-10 15:51:16,500 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 16:51:16] 2026-02-10 15:51:16,500 | INFO     | traces error code: 0
[2026-02-10 16:51:16] 2026-02-10 15:51:16,501 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 16:51:16] 2026-02-10 15:51:16,551 [wrapper] ==== pilot stdout END ====
[2026-02-10 16:51:16] 2026-02-10 15:51:16,553 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 16:51:16] 2026-02-10 15:51:16,556 [wrapper] pilotpid: 2621867
[2026-02-10 16:51:16] 2026-02-10 15:51:16,558 [wrapper] Pilot exit status: 0
[2026-02-10 16:51:16] 2026-02-10 15:51:16,565 [wrapper] pandaids: 7009370762
[2026-02-10 16:51:16] 2026-02-10 15:51:16,585 [wrapper] cleanup supervisor_pilot 2633544 2621868
[2026-02-10 16:51:16] 2026-02-10 15:51:16,587 [wrapper] Test setup, not cleaning
[2026-02-10 16:51:16] 2026-02-10 15:51:16,589 [wrapper] apfmon messages muted
[2026-02-10 16:51:16] 2026-02-10 15:51:16,592 [wrapper] ==== wrapper stdout END ====
[2026-02-10 16:51:16] 2026-02-10 15:51:16,594 [wrapper] ==== wrapper stderr END ====
[2026-02-10 16:51:16]  *** Error codes and diagnostics ***
[2026-02-10 16:51:16]     "exeErrorCode": 0,
[2026-02-10 16:51:16]     "exeErrorDiag": "",
[2026-02-10 16:51:16]     "pilotErrorCode": 0,
[2026-02-10 16:51:16]     "pilotErrorDiag": "",
[2026-02-10 16:51:16]  *** Listing of results directory ***
[2026-02-10 16:51:16] total 947952
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc    584627 Feb  9 21:26 pilot3.tar.gz
[2026-02-10 16:51:16] -rwx------ 1 boinc boinc     36322 Feb  9 21:28 runpilot2-wrapper.sh
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc      5111 Feb  9 21:30 queuedata.json
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc       100 Feb 10 14:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 16:51:16] -rwxr-xr-x 1 boinc boinc      7986 Feb 10 14:51 run_atlas
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc       105 Feb 10 14:51 job.xml
[2026-02-10 16:51:16] -rw-r--r-- 2 boinc boinc 680901225 Feb 10 14:51 EVNT.48431094._000444.pool.root.1
[2026-02-10 16:51:16] -rw-r--r-- 2 boinc boinc    597960 Feb 10 14:51 input.tar.gz
[2026-02-10 16:51:16] -rw-r--r-- 2 boinc boinc     15845 Feb 10 14:51 start_atlas.sh
[2026-02-10 16:51:16] drwxrwx--x 2 boinc boinc      4096 Feb 10 14:51 shared
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc         0 Feb 10 14:51 boinc_setup_complete
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc      6447 Feb 10 14:51 init_data.xml
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc         0 Feb 10 14:51 boinc_lockfile
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc      2556 Feb 10 14:51 pandaJob.out
[2026-02-10 16:51:16] -rw------- 1 boinc boinc   1009464 Feb 10 14:51 agis_schedconf.cvmfs.json
[2026-02-10 16:51:16] -rw------- 1 boinc boinc   1512955 Feb 10 14:51 agis_ddmendpoints.agis.ALL.json
[2026-02-10 16:51:16] -rw------- 1 boinc boinc       427 Feb 10 14:52 workernode_map.json
[2026-02-10 16:51:16] drwx------ 5 boinc boinc      4096 Feb 10 14:52 pilot3
[2026-02-10 16:51:16] -rw------- 1 boinc boinc 283177333 Feb 10 16:50 HITS.48431096._019808.pool.root.1
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc       530 Feb 10 16:50 boinc_task_state.xml
[2026-02-10 16:51:16] -rw------- 1 boinc boinc      1021 Feb 10 16:50 memory_monitor_summary.json
[2026-02-10 16:51:16] -rw------- 1 boinc boinc    321848 Feb 10 16:50 log.48431096._019808.job.log.tgz.1
[2026-02-10 16:51:16] -rw------- 1 boinc boinc      6315 Feb 10 16:50 heartbeat.json
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc      8192 Feb 10 16:50 boinc_mmap_file
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc        27 Feb 10 16:50 wrapper_checkpoint.txt
[2026-02-10 16:51:16] -rw------- 1 boinc boinc        95 Feb 10 16:51 pilot_heartbeat.json
[2026-02-10 16:51:16] -rw------- 1 boinc boinc      5230 Feb 10 16:51 pilotlog.txt
[2026-02-10 16:51:16] -rw------- 1 boinc boinc   1022620 Feb 10 16:51 log.48431096._019808.job.log.1
[2026-02-10 16:51:16] -rw------- 1 boinc boinc       357 Feb 10 16:51 output.list
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc       620 Feb 10 16:51 runtime_log
[2026-02-10 16:51:16] -rw------- 1 boinc boinc   1361920 Feb 10 16:51 result.tar.gz
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc      8916 Feb 10 16:51 runtime_log.err
[2026-02-10 16:51:16] -rw------- 1 boinc boinc       661 Feb 10 16:51 8ZSLDmQ3m98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmzYgKDmamzOJo.diag
[2026-02-10 16:51:16] -rw-r--r-- 1 boinc boinc     12765 Feb 10 16:51 stderr.txt
[2026-02-10 16:51:16] HITS file was successfully produced:
[2026-02-10 16:51:16] -rw------- 1 boinc boinc 283177333 Feb 10 16:50 shared/HITS.pool.root.1
[2026-02-10 16:51:16]  *** Contents of shared directory: ***
[2026-02-10 16:51:16] total 943428
[2026-02-10 16:51:16] -rw-r--r-- 2 boinc boinc 680901225 Feb 10 14:51 ATLAS.root_0
[2026-02-10 16:51:16] -rw-r--r-- 2 boinc boinc    597960 Feb 10 14:51 input.tar.gz
[2026-02-10 16:51:16] -rw-r--r-- 2 boinc boinc     15845 Feb 10 14:51 start_atlas.sh
[2026-02-10 16:51:16] -rw------- 1 boinc boinc 283177333 Feb 10 16:50 HITS.pool.root.1
[2026-02-10 16:51:16] -rw------- 1 boinc boinc   1361920 Feb 10 16:51 result.tar.gz
16:51:18 (2617831): run_atlas exited; CPU time 20686.547748
16:51:18 (2617831): called boinc_finish(0)

</stderr_txt>
]]>

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