Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:27:53 (2315932): wrapper (7.7.26015): starting
21:27:53 (2315932): wrapper: running run_atlas (--nthreads 4)
[2026-02-10 21:27:53] Arguments: --nthreads 4
[2026-02-10 21:27:53] Threads: 4
[2026-02-10 21:27:53] Checking for CVMFS
[2026-02-10 21:27:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 21:27:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 21:27:58] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 21:27:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 21:27:58] 2.9.2.0 8228 6662 95204 156089 3 188 31827619 36864001 0 130560 0 3150083 99.986 225482 11477 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-10 21:27:58] CVMFS is ok
[2026-02-10 21:27:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 21:27:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 21:27:58] Further information can be found at the LHC@home message board.
[2026-02-10 21:27:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 21:27:58] Checking for apptainer binary...
[2026-02-10 21:27:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 21:27:58] Running /usr/bin/apptainer --version
[2026-02-10 21:27:58] apptainer version 1.4.1-1.1
[2026-02-10 21:27:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 21:27:58] atlasA237
[2026-02-10 21:27:58] apptainer works
[2026-02-10 21:28:01] Set ATHENA_PROC_NUMBER=4
[2026-02-10 21:28:01] Set ATHENA_CORE_NUMBER=4
[2026-02-10 21:28:01] Starting ATLAS job with PandaID=7006911576
[2026-02-10 21:28:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 22:42:41]  *** The last 200 lines of the pilot log: ***
[2026-02-10 22:42:41] 2026-02-10 21:42:09,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-10 22:42:41] 2026-02-10 21:42:09,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-10 22:42:41] 2026-02-10 21:42:09,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-10 22:42:41] 2026-02-10 21:42:09,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-10 22:42:41] 2026-02-10 21:42:09,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-10 22:42:41] 2026-02-10 21:42:09,577 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-10 22:42:41] 2026-02-10 21:42:09,577 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 22:42:41] 2026-02-10 21:42:09,577 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 22:42:41] 2026-02-10 21:42:09,577 | INFO     | job 7006911576 has completed (purged errors)
[2026-02-10 22:42:41] 2026-02-10 21:42:09,577 | INFO     | overall cleanup function is called
[2026-02-10 22:42:41] 2026-02-10 21:42:10,584 | INFO     | --- collectZombieJob: --- 10, [2324725]
[2026-02-10 22:42:41] 2026-02-10 21:42:10,584 | INFO     | zombie collector waiting for pid 2324725
[2026-02-10 22:42:41] 2026-02-10 21:42:10,584 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 22:42:41] 2026-02-10 21:42:10,584 | INFO     | collected zombie processes
[2026-02-10 22:42:41] 2026-02-10 21:42:10,584 | INFO     | will attempt to kill all subprocesses of pid=2324725
[2026-02-10 22:42:41] 2026-02-10 21:42:10,648 | INFO     | process IDs to be killed: [2324725] (in reverse order)
[2026-02-10 22:42:41] 2026-02-10 21:42:10,688 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 22:42:41] 2026-02-10 21:42:10,688 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 22:42:41] 2026-02-10 21:42:10,690 | INFO     | did not find any defunct processes belonging to 2324725
[2026-02-10 22:42:41] 2026-02-10 21:42:10,692 | INFO     | did not find any defunct processes belonging to 2324725
[2026-02-10 22:42:41] 2026-02-10 21:42:10,692 | INFO     | ready for new job
[2026-02-10 22:42:41] 2026-02-10 21:42:10,693 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 22:42:41] 2026-02-10 21:42:10,693 | INFO     | **************************************
[2026-02-10 22:42:41] 2026-02-10 21:42:10,693 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 22:42:41] 2026-02-10 21:42:10,693 | INFO     | **************************************
[2026-02-10 22:42:41] 2026-02-10 21:42:10,693 | INFO     | 
[2026-02-10 22:42:41] 2026-02-10 21:42:10,694 | INFO     | architecture information:
[2026-02-10 22:42:41] 2026-02-10 21:42:10,694 | INFO     | executing command: cat /etc/os-release
[2026-02-10 22:42:41] 2026-02-10 21:42:10,707 | INFO     | cat /etc/os-release:
[2026-02-10 22:42:41] NAME="CentOS Linux"
[2026-02-10 22:42:41] VERSION="7 (Core)"
[2026-02-10 22:42:41] ID="centos"
[2026-02-10 22:42:41] ID_LIKE="rhel fedora"
[2026-02-10 22:42:41] VERSION_ID="7"
[2026-02-10 22:42:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 22:42:41] ANSI_COLOR="0;31"
[2026-02-10 22:42:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 22:42:41] HOME_URL="https://www.centos.org/"
[2026-02-10 22:42:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 22:42:41] 
[2026-02-10 22:42:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 22:42:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 22:42:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 22:42:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 22:42:41] 
[2026-02-10 22:42:41] 2026-02-10 21:42:10,707 | INFO     | **************************************
[2026-02-10 22:42:41] 2026-02-10 21:42:11,209 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 22:42:41] 2026-02-10 21:42:11,225 | INFO     | sufficient remaining disk space (323016982528 B)
[2026-02-10 22:42:41] 2026-02-10 21:42:11,225 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 22:42:41] 2026-02-10 21:42:11,225 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 22:42:41] 2026-02-10 21:42:11,225 | INFO     | update_server=False
[2026-02-10 22:42:41] 2026-02-10 21:42:11,225 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 22:42:41] 2026-02-10 21:42:11,225 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 22:42:41] 2026-02-10 21:42:11,447 | INFO     | all data control threads have been joined
[2026-02-10 22:42:41] 2026-02-10 21:42:11,495 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 22:42:41] 2026-02-10 21:42:11,495 | INFO     | aborting loop
[2026-02-10 22:42:41] 2026-02-10 21:42:11,687 | INFO     | all payload control threads have been joined
[2026-02-10 22:42:41] 2026-02-10 21:42:12,230 | INFO     | [job] retrieve thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:12,231 | INFO     | [job] queue monitor thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:12,430 | INFO     | all job control threads have been joined
[2026-02-10 22:42:41] 2026-02-10 21:42:12,452 | INFO     | [data] control thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:12,462 | INFO     | [payload] validate_post thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:12,499 | INFO     | [job] job monitor thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:12,606 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 22:42:41] 2026-02-10 21:42:12,692 | INFO     | [payload] control thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:12,697 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 22:42:41] 2026-02-10 21:42:13,099 | INFO     | [payload] failed_post thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:13,195 | INFO     | [job] validate thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:13,205 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:13,311 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:13,432 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:13,436 | INFO     | [job] control thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:13,511 | INFO     | [data] copytool_in thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:14,612 | INFO     | [data] copytool_out thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:16,702 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:18,813 | INFO     | [monitor] cgroup control has ended
[2026-02-10 22:42:41] 2026-02-10 21:42:21,987 | INFO     | job.realtimelogging is not enabled
[2026-02-10 22:42:41] 2026-02-10 21:42:22,993 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 22:42:41] 2026-02-10 21:42:23,745 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140271747024704)>', '<ExcThread(monitor, started 140270653916928)>']
[2026-02-10 22:42:41] 2026-02-10 21:42:28,752 | INFO     | all workflow threads have been joined
[2026-02-10 22:42:41] 2026-02-10 21:42:28,752 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 22:42:41] 2026-02-10 21:42:28,752 | INFO     | traces error code: 0
[2026-02-10 22:42:41] 2026-02-10 21:42:28,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 22:42:41] 2026-02-10 21:42:41,372 | INFO     | PID=2320127 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-10 22:42:41] 2026-02-10 21:42:41,373 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 22:42:41] 2026-02-10 21:42:41,373 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 22:42:41] 2026-02-10 21:42:41,373 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 22:42:41] 2026-02-10 21:42:41,373 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 22:42:41] 2026-02-10 21:42:41,373 | INFO     | [monitor] control thread has ended
[2026-02-10 22:42:41] 2026-02-10 21:42:41,438 [wrapper] ==== pilot stdout END ====
[2026-02-10 22:42:41] 2026-02-10 21:42:41,442 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 22:42:41] 2026-02-10 21:42:41,446 [wrapper] pilotpid: 2320127
[2026-02-10 22:42:41] 2026-02-10 21:42:41,450 [wrapper] Pilot exit status: 0
[2026-02-10 22:42:41] 2026-02-10 21:42:41,460 [wrapper] pandaids: 7006911576
[2026-02-10 22:42:41] 2026-02-10 21:42:41,485 [wrapper] cleanup supervisor_pilot 2348683 2320128
[2026-02-10 22:42:41] 2026-02-10 21:42:41,489 [wrapper] Test setup, not cleaning
[2026-02-10 22:42:41] 2026-02-10 21:42:41,493 [wrapper] apfmon messages muted
[2026-02-10 22:42:41] 2026-02-10 21:42:41,496 [wrapper] ==== wrapper stdout END ====
[2026-02-10 22:42:41] 2026-02-10 21:42:41,500 [wrapper] ==== wrapper stderr END ====
[2026-02-10 22:42:41]  *** Error codes and diagnostics ***
[2026-02-10 22:42:41]     "exeErrorCode": 0,
[2026-02-10 22:42:41]     "exeErrorDiag": "",
[2026-02-10 22:42:41]     "pilotErrorCode": 0,
[2026-02-10 22:42:41]     "pilotErrorDiag": "",
[2026-02-10 22:42:41]  *** Listing of results directory ***
[2026-02-10 22:42:41] total 671568
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc    584627 Feb 10 01:27 pilot3.tar.gz
[2026-02-10 22:42:41] -rwx------ 1 boinc boinc     36322 Feb 10 01:29 runpilot2-wrapper.sh
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc      5111 Feb 10 01:30 queuedata.json
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc       100 Feb 10 21:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 22:42:41] -rwxr-xr-x 1 boinc boinc      7986 Feb 10 21:27 run_atlas
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc       105 Feb 10 21:27 job.xml
[2026-02-10 22:42:41] -rw-r--r-- 2 boinc boinc 494729484 Feb 10 21:27 EVNT.48318032._000260.pool.root.1
[2026-02-10 22:42:41] drwxrwx--x 2 boinc boinc      4096 Feb 10 21:27 shared
[2026-02-10 22:42:41] -rw-r--r-- 2 boinc boinc    597964 Feb 10 21:27 input.tar.gz
[2026-02-10 22:42:41] -rw-r--r-- 2 boinc boinc     15845 Feb 10 21:27 start_atlas.sh
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc         0 Feb 10 21:27 boinc_setup_complete
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc      6371 Feb 10 21:27 init_data.xml
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc         0 Feb 10 21:27 boinc_lockfile
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc      2538 Feb 10 21:28 pandaJob.out
[2026-02-10 22:42:41] -rw------- 1 boinc boinc   1009534 Feb 10 21:28 agis_schedconf.cvmfs.json
[2026-02-10 22:42:41] -rw------- 1 boinc boinc   1512955 Feb 10 21:28 agis_ddmendpoints.agis.ALL.json
[2026-02-10 22:42:41] -rw------- 1 boinc boinc       423 Feb 10 21:28 workernode_map.json
[2026-02-10 22:42:41] drwx------ 5 boinc boinc      4096 Feb 10 21:28 pilot3
[2026-02-10 22:42:41] -rw------- 1 boinc boinc 187118662 Feb 10 22:41 HITS.48318034._014143.pool.root.1
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc       531 Feb 10 22:41 boinc_task_state.xml
[2026-02-10 22:42:41] -rw------- 1 boinc boinc      1025 Feb 10 22:42 memory_monitor_summary.json
[2026-02-10 22:42:41] -rw------- 1 boinc boinc    300151 Feb 10 22:42 log.48318034._014143.job.log.tgz.1
[2026-02-10 22:42:41] -rw------- 1 boinc boinc      6312 Feb 10 22:42 heartbeat.json
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc      8192 Feb 10 22:42 boinc_mmap_file
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc        27 Feb 10 22:42 wrapper_checkpoint.txt
[2026-02-10 22:42:41] -rw------- 1 boinc boinc       747 Feb 10 22:42 pilotlog.txt
[2026-02-10 22:42:41] -rw------- 1 boinc boinc        95 Feb 10 22:42 pilot_heartbeat.json
[2026-02-10 22:42:41] -rw------- 1 boinc boinc    654548 Feb 10 22:42 log.48318034._014143.job.log.1
[2026-02-10 22:42:41] -rw------- 1 boinc boinc       357 Feb 10 22:42 output.list
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc       620 Feb 10 22:42 runtime_log
[2026-02-10 22:42:41] -rw------- 1 boinc boinc    972800 Feb 10 22:42 result.tar.gz
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc      8911 Feb 10 22:42 runtime_log.err
[2026-02-10 22:42:41] -rw------- 1 boinc boinc       660 Feb 10 22:42 GTSLDm6nq98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmPwgKDmlgUc2m.diag
[2026-02-10 22:42:41] -rw-r--r-- 1 boinc boinc     11712 Feb 10 22:42 stderr.txt
[2026-02-10 22:42:41] HITS file was successfully produced:
[2026-02-10 22:42:41] -rw------- 1 boinc boinc 187118662 Feb 10 22:41 shared/HITS.pool.root.1
[2026-02-10 22:42:41]  *** Contents of shared directory: ***
[2026-02-10 22:42:41] total 667432
[2026-02-10 22:42:41] -rw-r--r-- 2 boinc boinc 494729484 Feb 10 21:27 ATLAS.root_0
[2026-02-10 22:42:41] -rw-r--r-- 2 boinc boinc    597964 Feb 10 21:27 input.tar.gz
[2026-02-10 22:42:41] -rw-r--r-- 2 boinc boinc     15845 Feb 10 21:27 start_atlas.sh
[2026-02-10 22:42:41] -rw------- 1 boinc boinc 187118662 Feb 10 22:41 HITS.pool.root.1
[2026-02-10 22:42:41] -rw------- 1 boinc boinc    972800 Feb 10 22:42 result.tar.gz
22:42:42 (2315932): run_atlas exited; CPU time 16627.715289
22:42:42 (2315932): called boinc_finish(0)

</stderr_txt>
]]>

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