Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:21:30 (2195468): wrapper (7.7.26015): starting
17:21:30 (2195468): wrapper: running run_atlas (--nthreads 4)
[2026-02-10 17:21:30] Arguments: --nthreads 4
[2026-02-10 17:21:30] Threads: 4
[2026-02-10 17:21:30] Checking for CVMFS
[2026-02-10 17:21:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 17:21:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 17:21:30] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 17:21:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 17:21:30] 2.9.2.0 8228 6415 94024 156088 1 49 31805348 36864001 0 130560 0 3030346 99.986 222572 11419 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-10 17:21:30] CVMFS is ok
[2026-02-10 17:21:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 17:21:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 17:21:30] Further information can be found at the LHC@home message board.
[2026-02-10 17:21:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 17:21:30] Checking for apptainer binary...
[2026-02-10 17:21:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 17:21:30] Running /usr/bin/apptainer --version
[2026-02-10 17:21:30] apptainer version 1.4.1-1.1
[2026-02-10 17:21:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 17:21:30] atlasA237
[2026-02-10 17:21:30] apptainer works
[2026-02-10 17:21:30] Set ATHENA_PROC_NUMBER=4
[2026-02-10 17:21:30] Set ATHENA_CORE_NUMBER=4
[2026-02-10 17:21:30] Starting ATLAS job with PandaID=7006758676
[2026-02-10 17:21:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 18:31:10]  *** The last 200 lines of the pilot log: ***
[2026-02-10 18:31:10] 2026-02-10 17:30:38,715 | INFO     | job 7006758676 has completed (purged errors)
[2026-02-10 18:31:10] 2026-02-10 17:30:38,715 | INFO     | overall cleanup function is called
[2026-02-10 18:31:10] 2026-02-10 17:30:39,721 | INFO     | --- collectZombieJob: --- 10, [2204227]
[2026-02-10 18:31:10] 2026-02-10 17:30:39,722 | INFO     | zombie collector waiting for pid 2204227
[2026-02-10 18:31:10] 2026-02-10 17:30:39,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 18:31:10] 2026-02-10 17:30:39,722 | INFO     | collected zombie processes
[2026-02-10 18:31:10] 2026-02-10 17:30:39,722 | INFO     | will attempt to kill all subprocesses of pid=2204227
[2026-02-10 18:31:10] 2026-02-10 17:30:39,787 | INFO     | process IDs to be killed: [2204227] (in reverse order)
[2026-02-10 18:31:10] 2026-02-10 17:30:39,827 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 18:31:10] 2026-02-10 17:30:39,827 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 18:31:10] 2026-02-10 17:30:39,830 | INFO     | did not find any defunct processes belonging to 2204227
[2026-02-10 18:31:10] 2026-02-10 17:30:39,832 | INFO     | did not find any defunct processes belonging to 2204227
[2026-02-10 18:31:10] 2026-02-10 17:30:39,832 | INFO     | ready for new job
[2026-02-10 18:31:10] 2026-02-10 17:30:39,832 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 18:31:10] 2026-02-10 17:30:39,833 | INFO     | **************************************
[2026-02-10 18:31:10] 2026-02-10 17:30:39,833 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 18:31:10] 2026-02-10 17:30:39,833 | INFO     | **************************************
[2026-02-10 18:31:10] 2026-02-10 17:30:39,833 | INFO     | 
[2026-02-10 18:31:10] 2026-02-10 17:30:39,833 | INFO     | architecture information:
[2026-02-10 18:31:10] 2026-02-10 17:30:39,833 | INFO     | executing command: cat /etc/os-release
[2026-02-10 18:31:10] 2026-02-10 17:30:39,847 | INFO     | cat /etc/os-release:
[2026-02-10 18:31:10] NAME="CentOS Linux"
[2026-02-10 18:31:10] VERSION="7 (Core)"
[2026-02-10 18:31:10] ID="centos"
[2026-02-10 18:31:10] ID_LIKE="rhel fedora"
[2026-02-10 18:31:10] VERSION_ID="7"
[2026-02-10 18:31:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 18:31:10] ANSI_COLOR="0;31"
[2026-02-10 18:31:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 18:31:10] HOME_URL="https://www.centos.org/"
[2026-02-10 18:31:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 18:31:10] 
[2026-02-10 18:31:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 18:31:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 18:31:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 18:31:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 18:31:10] 
[2026-02-10 18:31:10] 2026-02-10 17:30:39,847 | INFO     | **************************************
[2026-02-10 18:31:10] 2026-02-10 17:30:40,351 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 18:31:10] 2026-02-10 17:30:40,366 | INFO     | sufficient remaining disk space (323194191872 B)
[2026-02-10 18:31:10] 2026-02-10 17:30:40,367 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 18:31:10] 2026-02-10 17:30:40,367 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 18:31:10] 2026-02-10 17:30:40,367 | INFO     | update_server=False
[2026-02-10 18:31:10] 2026-02-10 17:30:40,367 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 18:31:10] 2026-02-10 17:30:40,367 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 18:31:10] 2026-02-10 17:30:40,367 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 18:31:10] 2026-02-10 17:30:41,123 | WARNING  | process 2204227 can no longer be monitored (due to stat problems) - aborting
[2026-02-10 18:31:10] 2026-02-10 17:30:41,166 | INFO     | all payload control threads have been joined
[2026-02-10 18:31:10] 2026-02-10 17:30:41,173 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-10 18:31:10] 2026-02-10 17:30:41,235 | INFO     | number of running child processes to parent process 2204227: 1
[2026-02-10 18:31:10] 2026-02-10 17:30:41,235 | INFO     | maximum number of monitored processes: 6
[2026-02-10 18:31:10] 2026-02-10 17:30:41,235 | INFO     | aborting job monitoring since job object (job id=7006758676) has expired
[2026-02-10 18:31:10] 2026-02-10 17:30:41,235 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 18:31:10] 2026-02-10 17:30:41,235 | INFO     | will abort loop
[2026-02-10 18:31:10] 2026-02-10 17:30:41,264 | INFO     | all job control threads have been joined
[2026-02-10 18:31:10] 2026-02-10 17:30:41,372 | INFO     | [job] retrieve thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:41,373 | INFO     | [job] queue monitor thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:41,449 | INFO     | all data control threads have been joined
[2026-02-10 18:31:10] 2026-02-10 17:30:41,462 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 18:31:10] 2026-02-10 17:30:41,857 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:41,866 | INFO     | [job] validate thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:41,878 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:42,160 | INFO     | [data] copytool_in thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:42,160 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:42,171 | INFO     | [payload] control thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:42,240 | INFO     | [job] job monitor thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:42,265 | INFO     | [job] control thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:42,454 | INFO     | [data] control thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:42,457 | INFO     | [payload] failed_post thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:42,742 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:42,966 | INFO     | [payload] validate_post thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:43,467 | INFO     | [data] copytool_out thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:44,373 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 18:31:10] 2026-02-10 17:30:47,909 | INFO     | [monitor] cgroup control has ended
[2026-02-10 18:31:10] 2026-02-10 17:30:49,623 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139687595833152)>', '<ExcThread(monitor, started 139686362216192)>']
[2026-02-10 18:31:10] 2026-02-10 17:30:54,648 | INFO     | all workflow threads have been joined
[2026-02-10 18:31:10] 2026-02-10 17:30:54,648 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 18:31:10] 2026-02-10 17:30:54,649 | INFO     | traces error code: 0
[2026-02-10 18:31:10] 2026-02-10 17:30:54,649 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 18:31:10] 2026-02-10 17:31:10,385 | INFO     | PID=2199617 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-10 18:31:10] 2026-02-10 17:31:10,386 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 18:31:10] 2026-02-10 17:31:10,386 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 18:31:10] 2026-02-10 17:31:10,386 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 18:31:10] 2026-02-10 17:31:10,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 18:31:10] 2026-02-10 17:31:10,386 | INFO     | [monitor] control thread has ended
[2026-02-10 18:31:10] 2026-02-10 17:31:10,455 [wrapper] ==== pilot stdout END ====
[2026-02-10 18:31:10] 2026-02-10 17:31:10,459 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 18:31:10] 2026-02-10 17:31:10,463 [wrapper] pilotpid: 2199617
[2026-02-10 18:31:10] 2026-02-10 17:31:10,466 [wrapper] Pilot exit status: 0
[2026-02-10 18:31:10] 2026-02-10 17:31:10,477 [wrapper] pandaids: 7006758676
[2026-02-10 18:31:10] 2026-02-10 17:31:10,503 [wrapper] cleanup supervisor_pilot 2228260 2199618
[2026-02-10 18:31:10] 2026-02-10 17:31:10,507 [wrapper] Test setup, not cleaning
[2026-02-10 18:31:10] 2026-02-10 17:31:10,510 [wrapper] apfmon messages muted
[2026-02-10 18:31:10] 2026-02-10 17:31:10,515 [wrapper] ==== wrapper stdout END ====
[2026-02-10 18:31:10] 2026-02-10 17:31:10,518 [wrapper] ==== wrapper stderr END ====
[2026-02-10 18:31:10]  *** Error codes and diagnostics ***
[2026-02-10 18:31:10]     "exeErrorCode": 0,
[2026-02-10 18:31:10]     "exeErrorDiag": "",
[2026-02-10 18:31:10]     "pilotErrorCode": 0,
[2026-02-10 18:31:10]     "pilotErrorDiag": "",
[2026-02-10 18:31:10]  *** Listing of results directory ***
[2026-02-10 18:31:10] total 663504
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc    584627 Feb  9 19:39 pilot3.tar.gz
[2026-02-10 18:31:10] -rwx------ 1 boinc boinc     36322 Feb  9 19:41 runpilot2-wrapper.sh
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc      5111 Feb  9 19:41 queuedata.json
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc       100 Feb 10 17:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 18:31:10] -rwxr-xr-x 1 boinc boinc      7986 Feb 10 17:21 run_atlas
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc       105 Feb 10 17:21 job.xml
[2026-02-10 18:31:10] -rw-r--r-- 2 boinc boinc 494402744 Feb 10 17:21 EVNT.48442096._000045.pool.root.1
[2026-02-10 18:31:10] drwxrwx--x 2 boinc boinc      4096 Feb 10 17:21 shared
[2026-02-10 18:31:10] -rw-r--r-- 2 boinc boinc    597962 Feb 10 17:21 input.tar.gz
[2026-02-10 18:31:10] -rw-r--r-- 2 boinc boinc     15845 Feb 10 17:21 start_atlas.sh
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc         0 Feb 10 17:21 boinc_setup_complete
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc      6371 Feb 10 17:21 init_data.xml
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc         0 Feb 10 17:21 boinc_lockfile
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc      2528 Feb 10 17:21 pandaJob.out
[2026-02-10 18:31:10] -rw------- 1 boinc boinc   1009534 Feb 10 17:21 agis_schedconf.cvmfs.json
[2026-02-10 18:31:10] -rw------- 1 boinc boinc   1512955 Feb 10 17:21 agis_ddmendpoints.agis.ALL.json
[2026-02-10 18:31:10] -rw------- 1 boinc boinc       430 Feb 10 17:21 workernode_map.json
[2026-02-10 18:31:10] drwx------ 5 boinc boinc      4096 Feb 10 17:21 pilot3
[2026-02-10 18:31:10] -rw------- 1 boinc boinc 179313533 Feb 10 18:30 HITS.48442098._005382.pool.root.1
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc       530 Feb 10 18:30 boinc_task_state.xml
[2026-02-10 18:31:10] -rw------- 1 boinc boinc      1026 Feb 10 18:30 memory_monitor_summary.json
[2026-02-10 18:31:10] -rw------- 1 boinc boinc    279925 Feb 10 18:30 log.48442098._005382.job.log.tgz.1
[2026-02-10 18:31:10] -rw------- 1 boinc boinc      6318 Feb 10 18:30 heartbeat.json
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc        27 Feb 10 18:31 wrapper_checkpoint.txt
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc      8192 Feb 10 18:31 boinc_mmap_file
[2026-02-10 18:31:10] -rw------- 1 boinc boinc       747 Feb 10 18:31 pilotlog.txt
[2026-02-10 18:31:10] -rw------- 1 boinc boinc        95 Feb 10 18:31 pilot_heartbeat.json
[2026-02-10 18:31:10] -rw------- 1 boinc boinc    614057 Feb 10 18:31 log.48442098._005382.job.log.1
[2026-02-10 18:31:10] -rw------- 1 boinc boinc       357 Feb 10 18:31 output.list
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc       620 Feb 10 18:31 runtime_log
[2026-02-10 18:31:10] -rw------- 1 boinc boinc    911360 Feb 10 18:31 result.tar.gz
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc      8911 Feb 10 18:31 runtime_log.err
[2026-02-10 18:31:10] -rw------- 1 boinc boinc       660 Feb 10 18:31 GysMDmFNl98n9Rq4apOajLDm4fhM0noT9bVooX4SDmmkfKDmsEM5pn.diag
[2026-02-10 18:31:10] -rw-r--r-- 1 boinc boinc     11443 Feb 10 18:31 stderr.txt
[2026-02-10 18:31:10] HITS file was successfully produced:
[2026-02-10 18:31:10] -rw------- 1 boinc boinc 179313533 Feb 10 18:30 shared/HITS.pool.root.1
[2026-02-10 18:31:10]  *** Contents of shared directory: ***
[2026-02-10 18:31:10] total 659428
[2026-02-10 18:31:10] -rw-r--r-- 2 boinc boinc 494402744 Feb 10 17:21 ATLAS.root_0
[2026-02-10 18:31:10] -rw-r--r-- 2 boinc boinc    597962 Feb 10 17:21 input.tar.gz
[2026-02-10 18:31:10] -rw-r--r-- 2 boinc boinc     15845 Feb 10 17:21 start_atlas.sh
[2026-02-10 18:31:10] -rw------- 1 boinc boinc 179313533 Feb 10 18:30 HITS.pool.root.1
[2026-02-10 18:31:10] -rw------- 1 boinc boinc    911360 Feb 10 18:31 result.tar.gz
18:31:11 (2195468): run_atlas exited; CPU time 15475.680340
18:31:11 (2195468): called boinc_finish(0)

</stderr_txt>
]]>

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