Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:25:20 (315729): wrapper (7.7.26015): starting
12:25:20 (315729): wrapper: running run_atlas (--nthreads 4)
[2026-02-10 12:25:20] Arguments: --nthreads 4
[2026-02-10 12:25:20] Threads: 4
[2026-02-10 12:25:20] Checking for CVMFS
[2026-02-10 12:25:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 12:25:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 12:25:20] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 12:25:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 12:25:20] 2.9.2.0 3607414 5064 98512 156085 2 50 25404802 36864001 0 130560 0 2398587 99.986 173115 11218 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-10 12:25:20] CVMFS is ok
[2026-02-10 12:25:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 12:25:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 12:25:20] Further information can be found at the LHC@home message board.
[2026-02-10 12:25:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 12:25:20] Checking for apptainer binary...
[2026-02-10 12:25:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 12:25:20] Running /usr/bin/apptainer --version
[2026-02-10 12:25:20] apptainer version 1.4.1-1.1
[2026-02-10 12:25:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 12:25:20] thA309
[2026-02-10 12:25:20] apptainer works
[2026-02-10 12:25:20] Set ATHENA_PROC_NUMBER=4
[2026-02-10 12:25:20] Set ATHENA_CORE_NUMBER=4
[2026-02-10 12:25:20] Starting ATLAS job with PandaID=7009299681
[2026-02-10 12:25:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 14:09:57]  *** The last 200 lines of the pilot log: ***
[2026-02-10 14:09:57] 2026-02-10 13:09:26,210 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 14:09:57] 2026-02-10 13:09:26,210 | INFO     | collected zombie processes
[2026-02-10 14:09:57] 2026-02-10 13:09:26,211 | INFO     | will attempt to kill all subprocesses of pid=324375
[2026-02-10 14:09:57] 2026-02-10 13:09:26,260 | INFO     | process IDs to be killed: [324375] (in reverse order)
[2026-02-10 14:09:57] 2026-02-10 13:09:26,295 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 14:09:57] 2026-02-10 13:09:26,295 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 14:09:57] 2026-02-10 13:09:26,298 | INFO     | did not find any defunct processes belonging to 324375
[2026-02-10 14:09:57] 2026-02-10 13:09:26,299 | INFO     | did not find any defunct processes belonging to 324375
[2026-02-10 14:09:57] 2026-02-10 13:09:26,299 | INFO     | ready for new job
[2026-02-10 14:09:57] 2026-02-10 13:09:26,299 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 14:09:57] 2026-02-10 13:09:26,300 | INFO     | **************************************
[2026-02-10 14:09:57] 2026-02-10 13:09:26,300 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 14:09:57] 2026-02-10 13:09:26,300 | INFO     | **************************************
[2026-02-10 14:09:57] 2026-02-10 13:09:26,300 | INFO     | 
[2026-02-10 14:09:57] 2026-02-10 13:09:26,300 | INFO     | architecture information:
[2026-02-10 14:09:57] 2026-02-10 13:09:26,301 | INFO     | executing command: cat /etc/os-release
[2026-02-10 14:09:57] 2026-02-10 13:09:26,315 | INFO     | cat /etc/os-release:
[2026-02-10 14:09:57] NAME="CentOS Linux"
[2026-02-10 14:09:57] VERSION="7 (Core)"
[2026-02-10 14:09:57] ID="centos"
[2026-02-10 14:09:57] ID_LIKE="rhel fedora"
[2026-02-10 14:09:57] VERSION_ID="7"
[2026-02-10 14:09:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 14:09:57] ANSI_COLOR="0;31"
[2026-02-10 14:09:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 14:09:57] HOME_URL="https://www.centos.org/"
[2026-02-10 14:09:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 14:09:57] 
[2026-02-10 14:09:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 14:09:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 14:09:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 14:09:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 14:09:57] 
[2026-02-10 14:09:57] 2026-02-10 13:09:26,315 | INFO     | **************************************
[2026-02-10 14:09:57] 2026-02-10 13:09:26,618 | WARNING  | process 324375 can no longer be monitored (due to stat problems) - aborting
[2026-02-10 14:09:57] 2026-02-10 13:09:26,654 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-10 14:09:57] 2026-02-10 13:09:26,654 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-10 14:09:57] 2026-02-10 13:09:26,654 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-10 14:09:57] 2026-02-10 13:09:26,654 | WARNING  | maxPSS not found in memory monitor output
[2026-02-10 14:09:57] 2026-02-10 13:09:26,654 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7009299681/payload.stdout) since it has not been created yet
[2026-02-10 14:09:57] 2026-02-10 13:09:26,654 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 14:09:57] 2026-02-10 13:09:26,669 | INFO     | sufficient remaining disk space (229391728640 B)
[2026-02-10 14:09:57] 2026-02-10 13:09:26,669 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-10 14:09:57] 2026-02-10 13:09:26,669 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7009299681/HITS.48431096._018606.pool.root.1 since it does not exist
[2026-02-10 14:09:57] 2026-02-10 13:09:26,715 | INFO     | number of running child processes to parent process 324375: 1
[2026-02-10 14:09:57] 2026-02-10 13:09:26,716 | INFO     | maximum number of monitored processes: 6
[2026-02-10 14:09:57] 2026-02-10 13:09:26,716 | INFO     | aborting job monitoring since job object (job id=7009299681) has expired
[2026-02-10 14:09:57] 2026-02-10 13:09:26,818 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 14:09:57] 2026-02-10 13:09:26,836 | INFO     | sufficient remaining disk space (229391728640 B)
[2026-02-10 14:09:57] 2026-02-10 13:09:26,836 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 14:09:57] 2026-02-10 13:09:26,837 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 14:09:57] 2026-02-10 13:09:26,837 | INFO     | update_server=False
[2026-02-10 14:09:57] 2026-02-10 13:09:26,837 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 14:09:57] 2026-02-10 13:09:26,837 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 14:09:57] 2026-02-10 13:09:26,837 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 14:09:57] 2026-02-10 13:09:26,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 14:09:57] 2026-02-10 13:09:26,837 | INFO     | will abort loop
[2026-02-10 14:09:57] 2026-02-10 13:09:26,890 | INFO     | all data control threads have been joined
[2026-02-10 14:09:57] 2026-02-10 13:09:27,532 | INFO     | job.realtimelogging is not enabled
[2026-02-10 14:09:57] 2026-02-10 13:09:27,813 | INFO     | all job control threads have been joined
[2026-02-10 14:09:57] 2026-02-10 13:09:27,842 | INFO     | [job] queue monitor thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:27,842 | INFO     | [job] retrieve thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:27,843 | INFO     | [job] job monitor thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:27,895 | INFO     | [data] control thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:27,937 | INFO     | all payload control threads have been joined
[2026-02-10 14:09:57] 2026-02-10 13:09:28,165 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:28,330 | INFO     | [payload] failed_post thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:28,538 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:28,723 | INFO     | [job] validate thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:28,792 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:28,819 | INFO     | [job] control thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:28,840 | INFO     | [data] copytool_out thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:28,879 | INFO     | [payload] validate_post thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:28,904 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:28,943 | INFO     | [payload] control thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:29,033 | INFO     | [data] copytool_in thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:30,253 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 14:09:57] 2026-02-10 13:09:34,260 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 14:09:57] 2026-02-10 13:09:41,411 | INFO     | [monitor] cgroup control has ended
[2026-02-10 14:09:57] 2026-02-10 13:09:42,759 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140509507962688)>', '<ExcThread(monitor, started 140508538054400)>']
[2026-02-10 14:09:57] 2026-02-10 13:09:47,785 | INFO     | all workflow threads have been joined
[2026-02-10 14:09:57] 2026-02-10 13:09:47,785 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 14:09:57] 2026-02-10 13:09:47,785 | INFO     | traces error code: 0
[2026-02-10 14:09:57] 2026-02-10 13:09:47,786 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 14:09:57] 2026-02-10 13:09:57,416 | INFO     | PID=319844 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-10 14:09:57] 2026-02-10 13:09:57,417 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 14:09:57] 2026-02-10 13:09:57,417 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 14:09:57] 2026-02-10 13:09:57,417 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 14:09:57] 2026-02-10 13:09:57,417 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 14:09:57] 2026-02-10 13:09:57,417 | INFO     | [monitor] control thread has ended
[2026-02-10 14:09:57] 2026-02-10 13:09:57,490 [wrapper] ==== pilot stdout END ====
[2026-02-10 14:09:57] 2026-02-10 13:09:57,494 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 14:09:57] 2026-02-10 13:09:57,498 [wrapper] pilotpid: 319844
[2026-02-10 14:09:57] 2026-02-10 13:09:57,502 [wrapper] Pilot exit status: 0
[2026-02-10 14:09:57] 2026-02-10 13:09:57,514 [wrapper] pandaids: 7009299681
[2026-02-10 14:09:57] 2026-02-10 13:09:57,538 [wrapper] cleanup supervisor_pilot  330631 319845
[2026-02-10 14:09:57] 2026-02-10 13:09:57,542 [wrapper] Test setup, not cleaning
[2026-02-10 14:09:57] 2026-02-10 13:09:57,546 [wrapper] apfmon messages muted
[2026-02-10 14:09:57] 2026-02-10 13:09:57,550 [wrapper] ==== wrapper stdout END ====
[2026-02-10 14:09:57] 2026-02-10 13:09:57,554 [wrapper] ==== wrapper stderr END ====
[2026-02-10 14:09:57]  *** Error codes and diagnostics ***
[2026-02-10 14:09:57]     "exeErrorCode": 0,
[2026-02-10 14:09:57]     "exeErrorDiag": "",
[2026-02-10 14:09:57]     "pilotErrorCode": 0,
[2026-02-10 14:09:57]     "pilotErrorDiag": "",
[2026-02-10 14:09:57]  *** Listing of results directory ***
[2026-02-10 14:09:57] total 943736
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc    584627 Feb  9 19:39 pilot3.tar.gz
[2026-02-10 14:09:57] -rwx------ 1 boinc boinc     36322 Feb  9 19:40 runpilot2-wrapper.sh
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc      5111 Feb  9 19:41 queuedata.json
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc       100 Feb 10 12:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 14:09:57] -rwxr-xr-x 1 boinc boinc      7986 Feb 10 12:25 run_atlas
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc       105 Feb 10 12:25 job.xml
[2026-02-10 14:09:57] -rw-r--r-- 2 boinc boinc 677211153 Feb 10 12:25 EVNT.48431094._000396.pool.root.1
[2026-02-10 14:09:57] -rw-r--r-- 2 boinc boinc    597968 Feb 10 12:25 input.tar.gz
[2026-02-10 14:09:57] -rw-r--r-- 2 boinc boinc     15845 Feb 10 12:25 start_atlas.sh
[2026-02-10 14:09:57] drwxrwx--x 2 boinc boinc      4096 Feb 10 12:25 shared
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc         0 Feb 10 12:25 boinc_setup_complete
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc      6377 Feb 10 12:25 init_data.xml
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc         0 Feb 10 12:25 boinc_lockfile
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc      2556 Feb 10 12:25 pandaJob.out
[2026-02-10 14:09:57] -rw------- 1 boinc boinc   1009464 Feb 10 12:25 agis_schedconf.cvmfs.json
[2026-02-10 14:09:57] -rw------- 1 boinc boinc   1512955 Feb 10 12:25 agis_ddmendpoints.agis.ALL.json
[2026-02-10 14:09:57] -rw------- 1 boinc boinc       427 Feb 10 12:25 workernode_map.json
[2026-02-10 14:09:57] drwx------ 5 boinc boinc      4096 Feb 10 12:25 pilot3
[2026-02-10 14:09:57] -rw------- 1 boinc boinc 282826187 Feb 10 14:08 HITS.48431096._018606.pool.root.1
[2026-02-10 14:09:57] -rw------- 1 boinc boinc        95 Feb 10 14:09 pilot_heartbeat.json
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc       530 Feb 10 14:09 boinc_task_state.xml
[2026-02-10 14:09:57] -rw------- 1 boinc boinc      1020 Feb 10 14:09 memory_monitor_summary.json
[2026-02-10 14:09:57] -rw------- 1 boinc boinc    311299 Feb 10 14:09 log.48431096._018606.job.log.tgz.1
[2026-02-10 14:09:57] -rw------- 1 boinc boinc      6320 Feb 10 14:09 heartbeat.json
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc      8192 Feb 10 14:09 boinc_mmap_file
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc        27 Feb 10 14:09 wrapper_checkpoint.txt
[2026-02-10 14:09:57] -rw------- 1 boinc boinc       746 Feb 10 14:09 pilotlog.txt
[2026-02-10 14:09:57] -rw------- 1 boinc boinc    900692 Feb 10 14:09 log.48431096._018606.job.log.1
[2026-02-10 14:09:57] -rw------- 1 boinc boinc       357 Feb 10 14:09 output.list
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc       620 Feb 10 14:09 runtime_log
[2026-02-10 14:09:57] -rw------- 1 boinc boinc   1228800 Feb 10 14:09 result.tar.gz
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc      8896 Feb 10 14:09 runtime_log.err
[2026-02-10 14:09:57] -rw------- 1 boinc boinc       657 Feb 10 14:09 TetNDmxMl98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm2JgKDmSrNQpn.diag
[2026-02-10 14:09:57] -rw-r--r-- 1 boinc boinc     12283 Feb 10 14:09 stderr.txt
[2026-02-10 14:09:57] HITS file was successfully produced:
[2026-02-10 14:09:57] -rw------- 1 boinc boinc 282826187 Feb 10 14:08 shared/HITS.pool.root.1
[2026-02-10 14:09:57]  *** Contents of shared directory: ***
[2026-02-10 14:09:57] total 939348
[2026-02-10 14:09:57] -rw-r--r-- 2 boinc boinc 677211153 Feb 10 12:25 ATLAS.root_0
[2026-02-10 14:09:57] -rw-r--r-- 2 boinc boinc    597968 Feb 10 12:25 input.tar.gz
[2026-02-10 14:09:57] -rw-r--r-- 2 boinc boinc     15845 Feb 10 12:25 start_atlas.sh
[2026-02-10 14:09:57] -rw------- 1 boinc boinc 282826187 Feb 10 14:08 HITS.pool.root.1
[2026-02-10 14:09:57] -rw------- 1 boinc boinc   1228800 Feb 10 14:09 result.tar.gz
14:09:59 (315729): run_atlas exited; CPU time 23659.234478
14:09:59 (315729): called boinc_finish(0)

</stderr_txt>
]]>

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